Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01860 and RBAM_011020
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:35
# Commandline: needle
# -asequence dna-align/BSNT_01860___yitJ.1.9828.seq
# -bsequence dna-align/RBAM_011020___yitJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01860___yitJ-RBAM_011020___yitJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01860___yitJ-RBAM_011020___yitJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01860___yitJ
# 2: RBAM_011020___yitJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1861
# Identity: 1437/1861 (77.2%)
# Similarity: 1437/1861 (77.2%)
# Gaps: 41/1861 ( 2.2%)
# Score: 5452.0
#
#
#=======================================
BSNT_01860___ 1 ATGGGACTTTTAGAAGATTTGCAAAG-ACAGGTGTTAATCGGTGACGGCG 49
||||||||.|||.||||.|| .|||| ||.|.|.||||||||.|||||.|
RBAM_011020__ 1 ATGGGACTATTACAAGACTT-AAAAGAACGGATTTTAATCGGAGACGGTG 49
BSNT_01860___ 50 CCATGGGGACGCTCCTCTACTCCTATGGCATTGACAGGTGTTTTGAGGAA 99
|.|||||.||.||||||||.|||||.|||||||||||.||||||||||||
RBAM_011020__ 50 CGATGGGCACTCTCCTCTATTCCTACGGCATTGACAGATGTTTTGAGGAA 99
BSNT_01860___ 100 CTCAATATTTCAAAGCCGGAGGAAATTCAGCGCATACATAAAGCGTATGT 149
||.||..|.||||||||.||.|||||..||||.||||||||.||.||.||
RBAM_011020__ 100 CTGAACGTATCAAAGCCCGAAGAAATCAAGCGGATACATAAGGCTTACGT 149
BSNT_01860___ 150 TGAAGCGGGAGCCAACATTATTCAAACGAATACGTACGGGGCCAACTATA 199
.|||||.||.||..||||.||.||.||.|||||||||||.||.||.|.||
RBAM_011020__ 150 GGAAGCCGGGGCAGACATCATCCAGACAAATACGTACGGCGCGAATTTTA 199
BSNT_01860___ 200 TTAAATTATCCAGACACGGTCTTGAGGATGACATCAAAAAAATGAATCAG 249
||||..|.||.|||.||||.||||||||.||.|..||||||||.||||||
RBAM_011020__ 200 TTAAGCTCTCAAGATACGGACTTGAGGACGAAACGAAAAAAATCAATCAG 249
BSNT_01860___ 250 GAGGCCGTAAAGATTGCGCGGGCTTCAGCAGGCGATGCATACGTGCTTGG 299
|||||.||.|..||.|||||.|||||..|||.||..||.||.||..|.||
RBAM_011020__ 250 GAGGCGGTCAGAATCGCGCGCGCTTCCTCAGACGGCGCTTATGTATTGGG 299
BSNT_01860___ 300 AACGATGGGCGGCATACGGACATTTAATAAAAACGCGTACAGTCTTGACG 349
|||||||||||||||.||.||.|||||.||||||||.|||||.||.||.|
RBAM_011020__ 300 AACGATGGGCGGCATCCGCACCTTTAACAAAAACGCCTACAGCCTGGAGG 349
BSNT_01860___ 350 AAATTAAGCGCAGCTTCCGCGAGCAGTTGTATCTGCTGCTGCATGAAGAG 399
|.|||||.||||||||.||.||||||.|.|||.|..|||||||.||||||
RBAM_011020__ 350 AGATTAAACGCAGCTTTCGGGAGCAGCTTTATTTATTGCTGCACGAAGAG 399
BSNT_01860___ 400 CCGGATGGCTTGCTGTTAGAAACATATTATGATTTGGAAGAAGCCCGTGA 449
|||||.||..||||..|.||||||||.||||||||.|||||.||.||.||
RBAM_011020__ 400 CCGGACGGTCTGCTTCTGGAAACATACTATGATTTAGAAGAGGCGCGCGA 449
BSNT_01860___ 450 AGTGCTGAAAATCGCGCGCAAAGAGACTGATCTTCCGATTATGCTCAATG 499
|||||||||.||||||.|.|||||.||.||.||||||||||||||.||.|
RBAM_011020__ 450 AGTGCTGAAGATCGCGAGAAAAGAAACGGAACTTCCGATTATGCTGAACG 499
BSNT_01860___ 500 TCTCCATGCACGAGCAAGGCGTATTGCAGGACGGAACACCGCTTTCTGAC 549
|.|||||||||||.||.|||||..|||||||||||||.|||||||..||.
RBAM_011020__ 500 TATCCATGCACGAACAGGGCGTGCTGCAGGACGGAACGCCGCTTTGGGAA 549
BSNT_01860___ 550 GCATTGCGATCGATTGCGGATCTCGGGGCTGATATCGTCGGCATTAACTG 599
||..|..|.||.|||||.||||||||.|||||.||.|..||.||.||.||
RBAM_011020__ 550 GCCCTCAGGTCCATTGCCGATCTCGGCGCTGACATAGCGGGAATCAATTG 599
BSNT_01860___ 600 CCGGCTCGGGCCTTATCACATGATTGAAGCGCTCAGCGAAGTGCCGATTT 649
|||||||||.||.||.|||||||||||||||||||.||||||||||||||
RBAM_011020__ 600 CCGGCTCGGCCCGTACCACATGATTGAAGCGCTCACCGAAGTGCCGATTT 649
BSNT_01860___ 650 TTGATGACG--TATTCTTATCCGTTTATCCGAACAGCAGTCTTCCTTCGC 697
|...||||| ||| |||||.||.||||||||||||||.|||||.||..
RBAM_011020__ 650 TCCGTGACGCTTAT--TTATCGGTCTATCCGAACAGCAGCCTTCCGTCTT 697
BSNT_01860___ 698 TTGAAGAGGGACGGCTCGTCTATGAAACAGACGACACGTATTTTCAAAAC 747
|.|||||.||.|||||.||.|||||.||.|||||..|.|||||.|...|.
RBAM_011020__ 698 TAGAAGAAGGCCGGCTTGTTTATGATACGGACGATGCCTATTTCCGGGAG 747
BSNT_01860___ 748 AGCG-CGT-CAGAATTCCGAAAGCAAGGCGCGCGGATTATCGGCGGCTGC 795
|||| ||| ||| |||||.|..||.||||||||.|||||||||||||||
RBAM_011020__ 748 AGCGCCGTACAG--TTCCGCACTCAGGGCGCGCGCATTATCGGCGGCTGC 795
BSNT_01860___ 796 TGCGGCACAACGCCGAATCACATCAGGGCGATGGCGGAAGCAGTTGGCGG 845
|||||.||.|||||.||.||.|||||.||.|||||.|||||.|||.||||
RBAM_011020__ 796 TGCGGTACGACGCCAAACCATATCAGAGCCATGGCTGAAGCGGTTCGCGG 845
BSNT_01860___ 846 GCTGGTT---CCGATTAAGGAAAAAGAAGTCAAAACC---CGGGCCAAAG 889
.|| || ||| |.|..||.||||||||.||||.| ||||...|||
RBAM_011020__ 846 CCT--TTCCCCCG-TCACTGAGAAAGAAGTGAAAATCAGACGGGAAGAAG 892
BSNT_01860___ 890 AATTCATTTCTGTTCATC-ACGAGCGAACCGAGCCCGGCCTGGATGAGAT 938
||.||||.||.| |||.| ||||.||.||||||||.||..|..|.||.||
RBAM_011020__ 893 AAGTCATCTCAG-TCAGCAACGAACGGACCGAGCCGGGTTTAAACGAAAT 941
BSNT_01860___ 939 CGCAGCGAAAAAACGCTCTATTATCGTAGAGCTGGATCCGCCGAAAAAAC 988
|||.||..|||||||.||.||||||||||||||.||||||||.||||||.
RBAM_011020__ 942 CGCCGCTCAAAAACGGTCAATTATCGTAGAGCTTGATCCGCCAAAAAAAT 991
BSNT_01860___ 989 TGAGCTTTGACAAATTTCTGTCCGCTGCTGCTGAATTAAAAGAAGCGGGA 1038
|||..|||||||||||||||...||.||.|||||||||||||||.|.||.
RBAM_011020__ 992 TGAATTTTGACAAATTTCTGCAAGCGGCGGCTGAATTAAAAGAAACCGGC 1041
BSNT_01860___ 1039 ATCGATGCCCTGACACTCGCCGACAATTCTCTGGCGACCCCGCGGATCAG 1088
||.||.||.|||||.||||||||||||||..|||||||.|||||||||||
RBAM_011020__ 1042 ATAGAAGCGCTGACGCTCGCCGACAATTCATTGGCGACACCGCGGATCAG 1091
BSNT_01860___ 1089 CAATGTTGCCTGCGGCGCTCTCATCAAGC---AACAG---CTCGATATGC 1132
|||||..|||||||| .|||| .|| ||.|| ||.|||||.|
RBAM_011020__ 1092 CAATGCCGCCTGCGG----TTCAT--TGCTGAAAGAGCGCCTTGATATCC 1135
BSNT_01860___ 1133 GTTCCCTTGTCCATATTACGTGCCGTGACCGTAACATTATCGGCTTACAG 1182
||||.||.||.||.|||||.|||.|.|||||.|||||.||||||.|.|||
RBAM_011020__ 1136 GTTCTCTCGTTCACATTACATGCAGAGACCGCAACATCATCGGCCTTCAG 1185
BSNT_01860___ 1183 TCACATTTAATGGGCCTTGATACGTTAGGGCTGAATGACGTGCTTGCTAT 1232
||||||||||||||.||.||||||.|.|||||.|..|||.|..|.||.||
RBAM_011020__ 1186 TCACATTTAATGGGGCTGGATACGCTCGGGCTCACCGACATTTTAGCCAT 1235
BSNT_01860___ 1233 TACAGGTGACCCTTCTAAAATCGGGGATTTTCCTGGTGCGACGTCTGTAT 1282
.||.||.||.|||||.||||||||.||.|||||.||.||.||.||.||.|
RBAM_011020__ 1236 CACGGGCGATCCTTCAAAAATCGGCGACTTTCCGGGGGCTACCTCCGTCT 1285
BSNT_01860___ 1283 ATGATTTAACATCTTTTGATTTAATCAGGCTGATCAAACAATTCAATGAA 1332
||||||||||.||.|||||.||.|||||||||||.|||||||||||.||.
RBAM_011020__ 1286 ATGATTTAACGTCCTTTGACTTGATCAGGCTGATTAAACAATTCAACGAG 1335
BSNT_01860___ 1333 GGTCTGTCTCTGTCTGGAAAACCGCTCGGCAAGAAAACGAATTTCTCAGT 1382
||..|.|||.|.||.||.|||||||||||||||||||||||.||.||.||
RBAM_011020__ 1336 GGCATTTCTTTATCAGGGAAACCGCTCGGCAAGAAAACGAACTTTTCCGT 1385
BSNT_01860___ 1383 TGCCGCCGCATTTAATCCTAACGTCCGCCATCTGGATAAAGCGGTAAAAC 1432
.||||..|||||||||||.||.||||||||.||.||||||||.|||||||
RBAM_011020__ 1386 AGCCGGAGCATTTAATCCGAATGTCCGCCACCTTGATAAAGCAGTAAAAC 1435
BSNT_01860___ 1433 GGCTTGAGAAAAAAATAGATTGCGGCGCAGATTATTTTGTTTCTCAGCCT 1482
||||.|||||||||||.||.|||||.||.||.||.||.||.||.||||||
RBAM_011020__ 1436 GGCTGGAGAAAAAAATCGAGTGCGGAGCTGACTACTTCGTGTCCCAGCCT 1485
BSNT_01860___ 1483 GTCTATTCCGAGCAGCAGCTTGTCGATATCCATAACGAAATAAAACATCT 1532
|||||.||.|||||||||||..|.||.||.|||.|.||||..||||||||
RBAM_011020__ 1486 GTCTACTCGGAGCAGCAGCTCATTGACATTCATCATGAAACGAAACATCT 1535
BSNT_01860___ 1533 GAAGACGCCGATCTATATCGGCATCATGCCGCTGACAAGCAGCCGGAATG 1582
.||.||.||..|.||||||||.|||||||||.|.||.||||||||.||.|
RBAM_011020__ 1536 CAAAACACCTGTGTATATCGGAATCATGCCGTTAACGAGCAGCCGCAACG 1585
BSNT_01860___ 1583 CCGAATTCATCCATAATGAAATTCCCGGCATTAAGCTGTCTGATACGATT 1632
|.||.|||||.|||.|||||||.||.||||||||||||||.||.|..||.
RBAM_011020__ 1586 CAGAGTTCATTCATCATGAAATCCCGGGCATTAAGCTGTCAGACAGCATC 1635
BSNT_01860___ 1633 CGCGAAAAAATGGCCCGTGCCGGTGAAGATAAAGAAAAGCAAAAGGCGGA 1682
||.|||||||||||.|..|||||.|||||.||...||||||.||.||.||
RBAM_011020__ 1636 CGAGAAAAAATGGCGCTCGCCGGCGAAGACAAGCGAAAGCAGAAAGCCGA 1685
BSNT_01860___ 1683 AGGCCTTGCGATTGCACGC----TCCCTGCTGGATACGGCATGCGAGCTG 1728
||||||.||.|| ||| ||.||.||.||.|||||.|||||.|||
RBAM_011020__ 1686 AGGCCTCGCCAT----CGCCAAGTCGCTTCTCGACACGGCGTGCGAACTG 1731
BSNT_01860___ 1729 TTTAACGGCATCTACTTGATAACGCCTTTCCTCAGATCTGACTTAACCGC 1778
||||||||.||.||.||.||.||.||.||.|||.|.|||||.||.||..|
RBAM_011020__ 1732 TTTAACGGAATTTATTTAATCACCCCGTTTCTCCGTTCTGATTTGACGTC 1781
BSNT_01860___ 1779 TGAGCTTACTTCATATATTCAGCAAAAAGATGAGCAGCGCCAAAATATCT 1828
.||||||.|..|.||||||.|||||||.|||||..||||.....||.|.|
RBAM_011020__ 1782 AGAGCTTGCAGCTTATATTAAGCAAAAGGATGAAAAGCGGGCTGATGTAT 1831
BSNT_01860___ 1829 TTTTGCATTAA 1839
.||||||||.|
RBAM_011020__ 1832 ATTTGCATTGA 1842
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