Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01867 and RBAM_011100

See Amino acid alignment / Visit BSNT_01867 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01867.1.9828.seq
#    -bsequence dna-align/RBAM_011100___ipi.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01867-RBAM_011100___ipi.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01867-RBAM_011100___ipi.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01867
# 2: RBAM_011100___ipi
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 490
# Identity:     312/490 (63.7%)
# Similarity:   312/490 (63.7%)
# Gaps:          62/490 (12.7%)
# Score: 894.0
# 
#
#=======================================

BSNT_01867         1 GTGAAACGGCTGCTTGTGATGCTCCTCCCCGTGCTGCTTTTGATAGGCTG     50
                     .||||..|||||.|||...||.|..|.||.||..|..|.|||||.||.||
RBAM_011100__      1 ATGAAGTGGCTGTTTGGCCTGTTATTACCGGTCATTTTATTGATCGGATG     50

BSNT_01867        51 CGGGA---AAGATGAGCAGACAGAACCCGATAAGGAGGTATCAGGCG---     94
                     |.|.|   ||...|.|||||..||.||||.|.||||||||||.||.|   
RBAM_011100__     51 CAGCAGTCAATCCGGGCAGAAGGAGCCCGCTGAGGAGGTATCCGGAGAGA    100

BSNT_01867        95 -GAATGGAGAATCAAGAGGTTGTTTTATCTATT-GACGCAA------TTC    136
                      |||| ||..|.||||.||          .||| |.||.||      |.|
RBAM_011100__    101 TGAAT-GAACAGCAAGCGG----------AATTAGCCGTAAACCCTGTGC    139

BSNT_01867       137 AGGAGCCTGAACAAATCAAGTTTAACATGTCGCTGAAGAACCAAAGTGAA    186
                     ||..|..|.|.||.|||.|.|||.|.|||||..|.||.|||.|.||.|..
RBAM_011100__    140 AGACGGATCAGCAGATCGAATTTCAAATGTCTTTAAAAAACAAGAGCGGC    189

BSNT_01867       187 CGTGCTATTGAGTTTCA-ATTCAGCACAGGGCAAAAATTTGAACTTG-TC    234
                     .|..|.||.|| ||||| |||||||.|||||||.|||||.||| ||| .|
RBAM_011100__    190 AGCCCGATCGA-TTTCACATTCAGCTCAGGGCAGAAATTCGAA-TTGACC    237

BSNT_01867       235 GTGTATGATTCTGAGCACAAAGAAAGATACCGTTATTCGAAAGACAAAAT    284
                     ||..||||.....|.|||||||||...|||||.|||||.|||||||||||
RBAM_011100__    238 GTACATGACCAACATCACAAAGAACTGTACCGCTATTCAAAAGACAAAAT    287

BSNT_01867       285 GTTTACGCAGGCTTTTCAAAACCTGACGCTT------GAATCTGGAGAAA    328
                     ||||||.|||||.|||||.|.|.|||| |||      ||||     ||||
RBAM_011100__    288 GTTTACTCAGGCGTTTCAGACCGTGAC-CTTAATGCCGAAT-----GAAA    331

BSNT_01867       329 CATATGATTTCTCTGATGTGTGGAAGGAAGTCCCTGAGCCCGGAACCTAT    378
                     |.|||||.||.||.||||||||||||.|.||.||||..||.|||||.||.
RBAM_011100__    332 CGTATGACTTTTCAGATGTGTGGAAGAACGTGCCTGGTCCGGGAACATAC    381

BSNT_01867       379 GAGGTAAAGGTGAC-ATTTAAGGG---------CAGGGCGGAAAA--TCT    416
                     ..|||.|.|||||| .|||.||||         |||..|||||||  .||
RBAM_011100__    382 ACGGTGACGGTGACGTTTTTAGGGAAGTCCGATCAGATCGGAAAAAGACT    431

BSNT_01867       417 CAAGCAGGTTCAGGCTGTTCAGCAGTTTGAAGTCAAATAA    456
                     .||...|||..|        |.|| ||||||||.||||||
RBAM_011100__    432 GAAAACGGTAAA--------AACA-TTTGAAGTGAAATAA    462


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