Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01868 and RBAM_011110

See Amino acid alignment / Visit BSNT_01868 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:35
# Commandline: needle
#    -asequence dna-align/BSNT_01868.1.9828.seq
#    -bsequence dna-align/RBAM_011110.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01868-RBAM_011110.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01868-RBAM_011110.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01868
# 2: RBAM_011110
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 200
# Identity:     161/200 (80.5%)
# Similarity:   161/200 (80.5%)
# Gaps:           4/200 ( 2.0%)
# Score: 634.5
# 
#
#=======================================

BSNT_01868         1 ATGAGAAATGAACTGTTTCAGCAGGCAAAATCATTTGTTCAACAGGCGGT     50
                     ||||||||.|||||||||...||.||.||.||||||||.||.|||||.||
RBAM_011110        1 ATGAGAAACGAACTGTTTTCTCAAGCCAAGTCATTTGTCCAGCAGGCCGT     50

BSNT_01868        51 CATGGTGACAAACGGCTTTGAGGAAGGCGATCAGGAGCAAGC-GATTCTG     99
                     ||||.|..|.|||||.||.|||||.|||||||||||..|||| |.|||  
RBAM_011110       51 CATGATTGCTAACGGTTTCGAGGACGGCGATCAGGAAAAAGCTGTTTC--     98

BSNT_01868       100 A-GAGCCAAAAATGCTGTATCTTCTGCGTATGCCAATTCGACAGATGCGG    148
                     | |.||||||||.||.||.|||||.|||||.|||||||||||.|||||.|
RBAM_011110       99 ACGCGCCAAAAACGCCGTGTCTTCCGCGTACGCCAATTCGACGGATGCAG    148

BSNT_01868       149 AACGTCAACAGCTGCATCAATTTCAAAATCAGCTGGACAAACTCCAATAA    198
                     |||||||.||||||||.||||||||..||||||||||.|||.|.||||||
RBAM_011110      149 AACGTCAGCAGCTGCACCAATTTCAGGATCAGCTGGAGAAATTGCAATAA    198


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