Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01880 and RBAM_011200
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:36
# Commandline: needle
# -asequence dna-align/BSNT_01880___argJ.1.9828.seq
# -bsequence dna-align/RBAM_011200___argJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01880___argJ-RBAM_011200___argJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01880___argJ-RBAM_011200___argJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01880___argJ
# 2: RBAM_011200___argJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1240
# Identity: 943/1240 (76.0%)
# Similarity: 943/1240 (76.0%)
# Gaps: 41/1240 ( 3.3%)
# Score: 3490.0
#
#
#=======================================
BSNT_01880___ 1 ATGATTCAGTTAAGTGAAGATCAAATTGTAAAAGTAACAGGTGATGTATC 50
|||||||||.|.|||||.| ||||....|||.|||.|||.|..|||||
RBAM_011200__ 1 ATGATTCAGCTGAGTGAGG---AAATCACGAAAATAAAAGGCGGCGTATC 47
BSNT_01880___ 51 CTCGCCAAAAGGGTTTCAGGCAAAGGGTGTGCATTGCGGGCTGCGCTACT 100
||||||.|||||.|||.||||||||||.|||||.|||||.||||||||.|
RBAM_011200__ 48 CTCGCCGAAAGGATTTGAGGCAAAGGGCGTGCACTGCGGTCTGCGCTATT 97
BSNT_01880___ 101 CGAAAAAAGACCTCGGCGTCATTATCAGCGAGACACTGGCTGTGAGCGCA 150
|.||||||||.|||||.|..|||||||||||..|.|..||.||.||.|||
RBAM_011200__ 98 CAAAAAAAGATCTCGGAGCGATTATCAGCGAAGCGCCTGCAGTCAGTGCA 147
BSNT_01880___ 151 GCAGTTTATACCCAAAGCCACTTTCAGGCTGCTCCGATCAAAGTGACACA 200
||.||.|||||.||.|||||.||||||||.||.|||.|.||||||||.||
RBAM_011200__ 148 GCGGTATATACGCAGAGCCATTTTCAGGCAGCACCGCTGAAAGTGACGCA 197
BSNT_01880___ 201 AGACAGCTT----AAAGCACGGACCGACACTGAAAGCCGTTATCGTCAAC 246
||.||||.| |||| |.||...| ||..|.||.||||||||||||
RBAM_011200__ 198 AGCCAGCCTGAAAAAAG-AGGGTGTG---CTTCAGGCGGTTATCGTCAAC 243
BSNT_01880___ 247 AGTGCCATTGCCAATGCCTGCACGGGAGAACAAGGCCTAAAGGACGCATA 296
||.||.||||||||.|||||.||||||||.|||||..||||||||||.||
RBAM_011200__ 244 AGCGCGATTGCCAACGCCTGTACGGGAGACCAAGGATTAAAGGACGCCTA 293
BSNT_01880___ 297 CACAATGCGGGAGAGCTTTGCTTCACAGCTTGGCATTGAGCCGGAGCTTG 346
...|||||||||..||||.||....|||||.|||||||||||||||||||
RBAM_011200__ 294 TGAAATGCGGGACGGCTTCGCGAGCCAGCTCGGCATTGAGCCGGAGCTTG 343
BSNT_01880___ 347 TCGCTGTTTCATCAACGGGTGTCATCGGCGAGCATTTAGACATGGAAAAA 396
|.||.|||||.|||||.||.||.||||||||||.||||||||||.|||||
RBAM_011200__ 344 TTGCGGTTTCGTCAACCGGGGTGATCGGCGAGCTTTTAGACATGAAAAAA 393
BSNT_01880___ 397 ATCCACGCGGGGATCGAGCTGCTGAAAGG---AACACC-TGCGGGATCAG 442
||.||.|||||.||.||.|.||| .|| |.|.|| |.||.| ||.|
RBAM_011200__ 394 ATTCAAGCGGGCATTGAACAGCT---CGGTCAAGCGCCGTCCGTG-TCCG 439
BSNT_01880___ 443 GCGATTTTGAGGAAGCAATTTTAACAACTGATACGGTGATCAAGCAGACG 492
|.|..|||||.|||||.|||||.||.||.|||||.||||..||.||||||
RBAM_011200__ 440 GAGCATTTGAAGAAGCCATTTTGACGACGGATACAGTGACGAAACAGACG 489
BSNT_01880___ 493 TGCTATGAACTGGCAATCGGCGGCAAAACA--GTCACGATCGGCGGAGCG 540
||.||||||||||..|||||||| |.||| .|||||||||||||||||
RBAM_011200__ 490 TGTTATGAACTGGTGATCGGCGG--AGACATCATCACGATCGGCGGAGCG 537
BSNT_01880___ 541 GCCAAAGGCTCAGGGATGATACACCCGAACATGGCCACGATGCTGGGATT 590
||.||||||||.||.|||||.|||||.||||||||.||.|||||.||.||
RBAM_011200__ 538 GCGAAAGGCTCCGGCATGATCCACCCCAACATGGCGACAATGCTCGGCTT 587
BSNT_01880___ 591 TGTGACAACTGACGCGGCAATCGAAGAAAAAGCGCTGCAAAAGGCGCTTC 640
|||.|||||.||||||||..|.||||||.|.|||||..||||.|||||..
RBAM_011200__ 588 TGTCACAACGGACGCGGCCGTGGAAGAACAGGCGCTCAAAAACGCGCTCA 637
BSNT_01880___ 641 GAGAAATCACTGACGTTTCATTTAACCAAATCACAGTTGACGGAGAAACA 690
||||.||.||.||.||||||||||||||||||||.|||||||||||||||
RBAM_011200__ 638 GAGAGATTACGGATGTTTCATTTAACCAAATCACCGTTGACGGAGAAACA 687
BSNT_01880___ 691 TCCACGAACGATATGGTATTAGTTATGGCGAATGGCTGCGCCGAAAACGA 740
||.|||||.||.|||||..|.||.|||||.||.||||||||.|..||.||
RBAM_011200__ 688 TCGACGAATGACATGGTGCTTGTGATGGCAAACGGCTGCGCGGGGAATGA 737
BSNT_01880___ 741 GTGCCTGACAGAAGACCATCCAGACTGGCCGGTCTTTAAAAAAACACT-- 788
.||||||||.||..|.||.||.||||||||||..||||||||...|.|
RBAM_011200__ 738 TTGCCTGACGGAGCAGCACCCTGACTGGCCGGCTTTTAAAAAGGGATTAA 787
BSNT_01880___ 789 --CTTGCTCACT-TGTGAGGATCTGGCTAAAGAGATTGCCAGAGACGGAG 835
|||| | ||.||.||.||.||.|||||.||.|||||||||||.|
RBAM_011200__ 788 AGCTTG-----TATGCGAAGACCTTGCCAAAGATATAGCCAGAGACGGTG 832
BSNT_01880___ 836 AAGGCGCGACAAAACTAATTGAAGCACA-AGTACAGGGAGCGAAAAACAA 884
||||.|||||.|||.|||||||||| || |||..|.||.|||||||||||
RBAM_011200__ 833 AAGGAGCGACGAAATTAATTGAAGC-CAGAGTCGAAGGCGCGAAAAACAA 881
BSNT_01880___ 885 TCTTGATGCAAACGTCATTGCCAAAAAGATTGTCGGCTCAAATCTCGTGA 934
.|||||.||.||..|.||.||||||||.||.||||||||||..||.||||
RBAM_011200__ 882 CCTTGAGGCGAATATTATCGCCAAAAAAATCGTCGGCTCAAGCCTTGTGA 931
BSNT_01880___ 935 AAACGGCAGTATACGGAACAGATGCCAACTGGGGGCGGATCATCGGAGCC 984
|.||.||.||.|||||.|||||.|||||.||||||||.||||||||.||.
RBAM_011200__ 932 AGACCGCCGTTTACGGCACAGACGCCAATTGGGGGCGCATCATCGGCGCA 981
BSNT_01880___ 985 ATTGGACACTCCGCAGCTCAA--GTGACGGCAGAAGAAGTAGAGGTTTAT 1032
||.||.|||...||.| ||| ||.|||||.|||.||||.||.||||..
RBAM_011200__ 982 ATCGGGCACAGTGCGG--CAAGCGTAACGGCCGAACAAGTGGAAGTTTTC 1029
BSNT_01880___ 1033 CTTGGCGGCCAATGCCTGTTTAAGAATAACGAGCCTCAGCCATTCTCTGA 1082
||.||||||||.||.||||||||..|.|||||.||||||||.||.||.||
RBAM_011200__ 1030 CTCGGCGGCCAGTGTCTGTTTAAACACAACGAACCTCAGCCGTTTTCGGA 1079
BSNT_01880___ 1083 ATCTCTCGCCAAGGAATACCTTGAAGGAGATGAAATCACCATTGTCA-TC 1131
|.||...||||||||.|||.|...|||.|||||.||.||.|||| || ||
RBAM_011200__ 1080 AACTGATGCCAAGGAGTACTTATCAGGTGATGAGATTACGATTG-CAGTC 1128
BSNT_01880___ 1132 AAGATGGATGAAGGGGACGGAAACGGGAGAGCGTGGGGCTGTGACCTGAC 1181
....||.|.|||||...|||.|.|||..|.||.|||||||||||..|.||
RBAM_011200__ 1129 CGCCTGCAGGAAGGCTCCGGCAGCGGCCGGGCATGGGGCTGTGATTTAAC 1178
BSNT_01880___ 1182 CTATGACTATATCAAAATTAACGCGAGCTATCGCACGTAA 1221
||||||.|||||.|||||.||.||||||||||||||.|||
RBAM_011200__ 1179 CTATGATTATATTAAAATCAATGCGAGCTATCGCACATAA 1218
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