Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01881 and RBAM_011210

See Amino acid alignment / Visit BSNT_01881 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:36
# Commandline: needle
#    -asequence dna-align/BSNT_01881___argB.1.9828.seq
#    -bsequence dna-align/RBAM_011210___argB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01881___argB-RBAM_011210___argB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01881___argB-RBAM_011210___argB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01881___argB
# 2: RBAM_011210___argB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 788
# Identity:     575/788 (73.0%)
# Similarity:   575/788 (73.0%)
# Gaps:          22/788 ( 2.8%)
# Score: 1938.5
# 
#
#=======================================

BSNT_01881___      1 ATGAAGAAAACAATCGTTTTTAAATGCGGGGGAAGCGTCATCCGTGAGCT     50
                     |||||||||||.|||||||||||.|||||.||.|||||.|||||.|||.|
RBAM_011210__      1 ATGAAGAAAACCATCGTTTTTAAGTGCGGCGGCAGCGTAATCCGCGAGTT     50

BSNT_01881___     51 GTCGGAGGAATTTTTTCAAAATCTGAAAGAGCTGATGGCGTCAGGCTGGA    100
                     .||.|..||.||||||||||||.|.||||||||.|||...||.|||||||
RBAM_011210__     51 ATCCGCCGATTTTTTTCAAAATGTAAAAGAGCTTATGCAATCGGGCTGGA    100

BSNT_01881___    101 AGCTGGCGATCGTACATGGCGGGGGACCGGAAATCACGAATATGCTGAAA    150
                     |..|.||..||||.|||||.||.||.|||||.||..|.||.|||||||||
RBAM_011210__    101 ACATTGCCGTCGTCCATGGAGGCGGCCCGGACATTTCAAAAATGCTGAAA    150

BSNT_01881___    151 CGGTTAAATATCAAGACAGAGTTT-TCGGGCGGACAGAGGAAAACAACGA    199
                     ...||..|.||..|.||.||.||| || |..||||||.|||||||.||.|
RBAM_011210__    151 ACATTGCAGATTGAAACGGAATTTGTC-GATGGACAGCGGAAAACGACCA    199

BSNT_01881___    200 AGCCGGTGCTGGAAGTGGCGGAAATGGTTTTATCCGGTTCTGTCAATAAA    249
                     |.||||||||||||...|||||||||||.||.||.||..|..||||||||
RBAM_011210__    200 AACCGGTGCTGGAAACAGCGGAAATGGTCTTGTCAGGGACGATCAATAAA    249

BSNT_01881___    250 TTTTTCGTTGCTGAGCTTGCCAAACACGGACTGCGAGCCGCAGGCATTTC    299
                     ||||||||..|.||.||.||.|||.||||.|||..||||||.||.||.||
RBAM_011210__    250 TTTTTCGTAACCGAACTCGCGAAAAACGGGCTGAAAGCCGCGGGAATATC    299

BSNT_01881___    300 TGGTAAGGATGGAGGTCTTTTGGAGGCTGATTATCTAGATCCGGAAACAC    349
                     .||.|||||.||.|||||..|..|.||...|||.||..|||..||.|.|.
RBAM_011210__    300 AGGAAAGGACGGCGGTCTCCTTCAAGCATCTTACCTTAATCAAGACAAAT    349

BSNT_01881___    350 ACGGAGAAGTGGGAGAAAT-CAAAAAAGTCGATGCGTCCATGGTGAACGC    398
                     ||||||||||.||.||||| ||||||| .||||.||||.||..|..||||
RBAM_011210__    350 ACGGAGAAGTCGGCGAAATACAAAAAA-CCGATCCGTCAATCATTCACGC    398

BSNT_01881___    399 GCTGATGGAAAATGGCATCATCCCAGTTATTGCGCCGCTGTCTATGACAA    448
                     ..|.|||.||.|.||||||||.||.|||||.||.|||||.||.|||||||
RBAM_011210__    399 ATTAATGAAAGAAGGCATCATTCCCGTTATCGCTCCGCTTTCCATGACAA    448

BSNT_01881___    449 GCGACTGCAAAACGCTGAATGTAAATGCTGATCTGGCTGCTTCAGCAGTC    498
                     |.||.|.|.||||||||||.||.||.||.||....||.||.||.||.|||
RBAM_011210__    449 GTGATTTCGAAACGCTGAACGTCAACGCAGACGCCGCGGCATCGGCCGTC    498

BSNT_01881___    499 GCCGGAGCGCTT-GAAGCTGATAAGCTGATGTTCGTCACGGATGTCGATG    547
                     ||...||| ||| .|.||.||.||.||..|.||.||||||||||||||.|
RBAM_011210__    499 GCTTCAGC-CTTACACGCCGACAAACTTTTATTTGTCACGGATGTCGAAG    547

BSNT_01881___    548 GAATCAT-GAAGGA-AAAGCAGCGTCTGGACGTCC--TGACCCCTAAGGA    593
                     ||||.|| ||.||| |.||||| || ||||  |.|  ||||.||..|.||
RBAM_011210__    548 GAATTATGGACGGAGAGAGCAG-GT-TGGA--TACTTTGACGCCGCAAGA    593

BSNT_01881___    594 GATTCAGATGCTGATCAAGCAGGAAGTGATCACAGGAGGGATGATCCCGA    643
                     |||||||...||.||..|..|.|..|||||..|||||||||||||.||||
RBAM_011210__    594 GATTCAGGCCCTCATAGATGACGGCGTGATTTCAGGAGGGATGATTCCGA    643

BSNT_01881___    644 AGGTCAATTCAGCCTTGTCAGCTTTA-TCAGATCAGGTGTC--TGAAGTC    690
                     ||||.||.||.||.||.||.||   | |.||...||..|||  .|||||.
RBAM_011210__    644 AGGTAAACTCGGCATTATCGGC---ACTGAGTGAAGACGTCGAGGAAGTG    690

BSNT_01881___    691 ATGATCGTAAACGGAAAAGGATCATTCTTCGCAGAACAAACCTTTCAGGG    740
                     |||||||||||||||||||||.|.||.|||.|.||.|||.||||.||.||
RBAM_011210__    691 ATGATCGTAAACGGAAAAGGAGCGTTTTTCACCGATCAAGCCTTCCAAGG    740

BSNT_01881___    741 GACAAAAATCGTCAAAGCAAAGGAG-GCTGTTTCATGA    777
                     .||||||||||||||||.||||||| || ||.||||||
RBAM_011210__    741 AACAAAAATCGTCAAAGAAAAGGAGAGC-GTGTCATGA    777


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