Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01884 and RBAM_011240
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:37
# Commandline: needle
# -asequence dna-align/BSNT_01884___carB.1.9828.seq
# -bsequence dna-align/RBAM_011240___carB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01884___carB-RBAM_011240___carB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01884___carB-RBAM_011240___carB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01884___carB
# 2: RBAM_011240___carB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 3134
# Identity: 2411/3134 (76.9%)
# Similarity: 2411/3134 (76.9%)
# Gaps: 79/3134 ( 2.5%)
# Score: 9088.0
#
#
#=======================================
BSNT_01884___ 1 ATGCCTAAAGACACCAGTATTTCAAGCATATTAGTAATCGGATCAGGCCC 50
|||||||||||.||.|..|||||.|||||||||||.|||||.||.|||||
RBAM_011240__ 1 ATGCCTAAAGATACAACCATTTCCAGCATATTAGTCATCGGCTCCGGCCC 50
BSNT_01884___ 51 GATCATCATCGGGCAGGCGGCAGAATTTGATTATTCAGGAACTCAAGGGT 100
.|||||||||||.|||||||||||||||||||||||||||||.||.||.|
RBAM_011240__ 51 CATCATCATCGGCCAGGCGGCAGAATTTGATTATTCAGGAACGCAGGGCT 100
BSNT_01884___ 101 GCATCGCGCTGAAGGAGGAGGGCTACCGGGTGATTCTCGTCAACAGCAAT 150
||||.||.|||||.||.||.||.|||||.||.|||||.|||||||.|||.
RBAM_011240__ 101 GCATGGCTCTGAAAGAAGAAGGATACCGCGTTATTCTAGTCAACAACAAC 150
BSNT_01884___ 151 CCGGCGACAATTATGACCGATGAAGCCTTTGCTGATGAGATTTATTTTGA 200
|||||.||.||||||||.|||||.||.|||||.|||||.||.||||||||
RBAM_011240__ 151 CCGGCAACGATTATGACGGATGAGGCGTTTGCCGATGAAATATATTTTGA 200
BSNT_01884___ 201 GCCTCTGACAGCAGAAAGCCT-GACAGCCATCATTAAGAAAGAACAGCCT 249
.||.||.|||.|.||.|||.| || .|||||.|||.|.||||||.|.||.
RBAM_011240__ 201 ACCGCTCACAACCGACAGCATCGA-GGCCATTATTGAAAAAGAAAAACCG 249
BSNT_01884___ 250 GATGGGCTTCTTGCCAATTTAGGCGGTCAGACCGCGTTGAATTTAGCAGT 299
||.||.||.|||||||||||.|||||.|||||.||.|||||||||||.||
RBAM_011240__ 250 GACGGTCTGCTTGCCAATTTGGGCGGCCAGACGGCATTGAATTTAGCCGT 299
BSNT_01884___ 300 GGAGCTTGAAGAAACGGGTGTTTTAAAGGAGCACGGCGTCAAGCTTCTCG 349
..|||||||||||.|.||.||..|.|||.||||...||||||||||.|.|
RBAM_011240__ 300 TAAGCTTGAAGAAGCAGGCGTGCTGAAGAAGCATCACGTCAAGCTTTTGG 349
BSNT_01884___ 350 GCACATCCGTTGAAACGATACAAAAAGGAGAAGACCGGGAAAAATTCCGT 399
|.|||||.||.|||||.||.||||||||.|||||||||||..|.||||||
RBAM_011240__ 350 GAACATCGGTGGAAACCATTCAAAAAGGCGAAGACCGGGAGCAGTTCCGT 399
BSNT_01884___ 400 TCGTTAATGAACGAATTGAATCAGCCCGTGCCAGAGAGTGAAATTGTTGA 449
.|..|.|||||.||..|..||||||||||.||.||.||.|||||.||.||
RBAM_011240__ 400 GCTCTGATGAAAGAGCTCGATCAGCCCGTTCCGGAAAGCGAAATCGTCGA 449
BSNT_01884___ 450 TAATGAAACCGACGCCATCCGGTTTGCGGAATCCATCGGTTTTCCCGTTA 499
.||.|||...||||||.||||.||.||.||.||.|||||.|||||.||.|
RBAM_011240__ 450 CAACGAAGAAGACGCCCTCCGTTTCGCTGAGTCTATCGGATTTCCGGTCA 499
BSNT_01884___ 500 TTATCAGACCTGCTTACACATTAGGCGGAAAGGGCGGAGGAATCGCCCCT 549
||.|.|||||.||.|||||.||||||||||||||.||.||||||||
RBAM_011240__ 500 TTCTGAGACCGGCGTACACGTTAGGCGGAAAGGGAGGCGGAATCGC---- 545
BSNT_01884___ 550 GA----TAAAGAAGCCTTTACAG-CTATGATTAAACAGGCGCTATTAGCA 594
|| .||||||||.||| ||| |..|.||||||||||||||.||||||
RBAM_011240__ 546 GAAAACGAAAGAAGCGTTT-CAGACGCTTATTAAACAGGCGCTCTTAGCA 594
BSNT_01884___ 595 AGCCCGATCAATCAATGCCTTGTCGAAAAAAGCATTGCAGGCTTTAAAGA 644
||||||||||..||||||||.||||||||||||||.||.||.||||||||
RBAM_011240__ 595 AGCCCGATCAGCCAATGCCTCGTCGAAAAAAGCATCGCCGGTTTTAAAGA 644
BSNT_01884___ 645 GATTGAATATGAAGTCATGCGTGACAGCAATAACACATGCATTACCGTCT 694
.||.||||||||.||||||||.|||||||||.|.||||||||.|||||||
RBAM_011240__ 645 AATCGAATATGAGGTCATGCGCGACAGCAATCATACATGCATCACCGTCT 694
BSNT_01884___ 695 GCAACATGGAAAATATCGATCCGGTCGGCGTGCATACAGGTGACTCTATC 744
|.||.||||||||.||||||||.|||||||||||.|||||.|||||.||.
RBAM_011240__ 695 GTAATATGGAAAACATCGATCCCGTCGGCGTGCACACAGGGGACTCCATT 744
BSNT_01884___ 745 GTTGTGGCGCCTTCACAAACATTGACAGATGAAGACTATCAAATGCTGCG 794
||.||.||.||.||.||.||.||.||.||||||||.|||||.||||||||
RBAM_011240__ 745 GTCGTCGCACCGTCCCAGACGTTAACGGATGAAGAATATCAGATGCTGCG 794
BSNT_01884___ 795 GACGGCTAGTCTGACCATCATTTCAGCACTTGATGTCGTAGGCGGCTGCA 844
..|.||.||.|||.|.||.|||||.||.||.|||||.||.||||||||||
RBAM_011240__ 795 TTCAGCAAGCCTGGCGATTATTTCGGCGCTGGATGTGGTCGGCGGCTGCA 844
BSNT_01884___ 845 ATATTCAATTCGCGCTTGATCCTTTCAGCAAGCAATATTACGTGATCGAA 894
|.||||||||.|||.|.|||||.||||||||.||.||.||.||.||.|||
RBAM_011240__ 845 ACATTCAATTTGCGATGGATCCGTTCAGCAAACAGTACTATGTCATTGAA 894
BSNT_01884___ 895 GTGAATCCGCGTGTCAGCCGGTCATCGGCTCTCGCATCTAAAGCGACCGG 944
|||||.||||||||||||||.||.||.||||||||.||.|||||||||||
RBAM_011240__ 895 GTGAACCCGCGTGTCAGCCGCTCTTCAGCTCTCGCGTCAAAAGCGACCGG 944
BSNT_01884___ 945 TTATCCGATTGCAAAGATGGCTGCTAAACTGGCAGTCGGATACACACTTG 994
.|||||||||||.||.|||||.||.|||||.||.|||||.||.||.||||
RBAM_011240__ 945 CTATCCGATTGCCAAAATGGCGGCGAAACTTGCCGTCGGCTATACGCTTG 994
BSNT_01884___ 995 ACGAGCTGAAAAATCCGCTCACAGGCTCAACTTACGCAAGCTTTGAACCG 1044
|.||.||||||||||||||.||.|||||.|||||.|||||||||||||||
RBAM_011240__ 995 ATGAACTGAAAAATCCGCTGACGGGCTCTACTTATGCAAGCTTTGAACCG 1044
BSNT_01884___ 1045 GCACTGGACTATGTGATCGTCAAATTTCCGCGCTGGCCGTTTGATAAATT 1094
||.||.||.|||||.|||||||||||.|||||||||||||||||||||||
RBAM_011240__ 1045 GCGCTTGATTATGTCATCGTCAAATTCCCGCGCTGGCCGTTTGATAAATT 1094
BSNT_01884___ 1095 CAAAAACGCAGACCGCAAGCTTGGCACAAAAATGAAAGCCACCGGTGAAG 1144
.|||.|.||.|||||||.|||.||.||.|||||||||||.||.||.||.|
RBAM_011240__ 1095 TAAACATGCCGACCGCACGCTCGGAACGAAAATGAAAGCGACGGGAGAGG 1144
BSNT_01884___ 1145 TGATGGCGATTGAACGGAATTTAGAAGCAGCGATACAAAAGGCAGCCGCG 1194
|.||||||||||||.|.|||.|.|||||.||.||.|||||.||.||.||.
RBAM_011240__ 1145 TCATGGCGATTGAAAGAAATATGGAAGCGGCCATTCAAAAAGCGGCGGCC 1194
BSNT_01884___ 1195 TCGCTTGAATTAAAAAATATCGGGACACACCTTCCAGAGCTCAGCGGGTT 1244
||.|||||..|.||||..|||||.||.|.|||.||.||.|||.|| ||.|
RBAM_011240__ 1195 TCCCTTGAGCTGAAAACGATCGGCACCCGCCTGCCTGAACTCGGC-GGCT 1243
BSNT_01884___ 1245 GT-CAATTGATACGCTATGGGATTTGGCAATCACTCCGGATGACCGCAGA 1293
|| |.||..||..|||.|||||.||.||..|.||.|||||||||||.|||
RBAM_011240__ 1244 GTACGATCAATCAGCTGTGGGAATTAGCGGTAACGCCGGATGACCGGAGA 1293
BSNT_01884___ 1294 TTTTTCGTTGTCATGGAGCTGTTGAGCCGCAGCGTCTCGATTGATGACAT 1343
||||||||.||||||||||||||.||||||.|.|...||||.||.|||||
RBAM_011240__ 1294 TTTTTCGTCGTCATGGAGCTGTTAAGCCGCGGTGAAACGATAGAAGACAT 1343
BSNT_01884___ 1344 CCATGAAAAAACAAAAATTGATCCGTTTTTCCTTCATACCTT-TGACAAC 1392
|||||..|||||.||||||||.||||||||.||.|||...|| .|| ||.
RBAM_011240__ 1344 CCATGCCAAAACGAAAATTGACCCGTTTTTTCTCCATGTATTCCGA-AAT 1392
BSNT_01884___ 1393 ATCATCAAATTGGAAAACCGCCTGATGGAAGCA-GGGAGCGATCTCTCTT 1441
|||||||.||||||||||...||||||||||.| ||||.| ||||.||||
RBAM_011240__ 1393 ATCATCACATTGGAAAACAAGCTGATGGAAGAAGGGGATC-ATCTGTCTT 1441
BSNT_01884___ 1442 TTGAATTATTGAAGAAAGCAAAGGAAAAGGGATTCTCAGACGCAACGATT 1491
|...|.|.||.|||.|.||.||||.||||||.|||.|.||.|..|.|||.
RBAM_011240__ 1442 TCCCACTTTTAAAGCAGGCGAAGGTAAAGGGCTTCACGGATGTCATGATC 1491
BSNT_01884___ 1492 GCCTCACTGATCGGCAAAACAGAGGAAGAGGTGCGCGCGCTTCGCAAGGA 1541
||.||.||.|..||.|||||.||.|||||..|.||.||.| ||..||.||
RBAM_011240__ 1492 GCATCTCTCACGGGAAAAACGGAAGAAGACATCCGTGCTC-TCAGAAAGA 1540
BSNT_01884___ 1542 GAT-GGGCATTACG--CCTTCCTTTAAAATCGTAGATACATGCGCGGCAG 1588
.|| .||||| || ||.||.|||||||||||||||||||||||.||.|
RBAM_011240__ 1541 AATCAGGCAT--CGTCCCGTCGTTTAAAATCGTAGATACATGCGCCGCTG 1588
BSNT_01884___ 1589 AGTTTGATGCGAAAACAAACTATTTTTACTCCACATATTTCGGAGAAACC 1638
|.||||||||.||.||.||.|||||.||||||||.||..||||.||||.|
RBAM_011240__ 1589 AATTTGATGCCAAGACGAATTATTTCTACTCCACCTACCTCGGGGAAAGC 1638
BSNT_01884___ 1639 GATGGAGACATCAGCCGCAAAGAGAAAAAACGCGCGCTCATTATCGGATC 1688
||.|||||.||||||||.|||||||||||||||||.|||||.|||||.||
RBAM_011240__ 1639 GACGGAGATATCAGCCGAAAAGAGAAAAAACGCGCCCTCATCATCGGCTC 1688
BSNT_01884___ 1689 AGGCCCGATTCGGATCGGCCAAGGCGTTGAATTTGATAATAGTGCTGTTC 1738
|||||||||.||.|||||.||.||.||.|||||||||.|.||.||.||.|
RBAM_011240__ 1689 AGGCCCGATCCGCATCGGTCAGGGAGTGGAATTTGATTACAGCGCCGTCC 1738
BSNT_01884___ 1739 ACGGTGTGCTGACACTGCAAGAGCTTGGATTCGAAACCATCATGATTAAC 1788
||||.||.|||||.||||||.||||.||.|..|||||.||.|||||.||.
RBAM_011240__ 1739 ACGGCGTTCTGACCCTGCAAAAGCTGGGGTATGAAACGATTATGATCAAT 1788
BSNT_01884___ 1789 AATAACCCGGAAACGGTCAGCACCGATTATGAAATTGCGGACCGCCTGTA 1838
||.||.||||||||.||.|||||.|||||||||||.||.|||||.||.||
RBAM_011240__ 1789 AACAATCCGGAAACAGTAAGCACGGATTATGAAATCGCTGACCGGCTTTA 1838
BSNT_01884___ 1839 TTTTGAACCAATGACAACGGAGCATATTGTAAACGTGGCGGAGCAGGAAA 1888
|||||||||..||||.||.||.||||||.|.||.||||||||.||.||||
RBAM_011240__ 1839 TTTTGAACCGCTGACGACAGAACATATTTTGAATGTGGCGGAACATGAAA 1888
BSNT_01884___ 1889 ATATTGATTTTGCAATTGTGCAATTCGGCGGCCAAACTGCAATCAATGCT 1938
|.|||||||||||.||.||.||.||.||.||.||.||.||.||||||||.
RBAM_011240__ 1889 ACATTGATTTTGCCATCGTCCAGTTTGGGGGACAGACCGCGATCAATGCC 1938
BSNT_01884___ 1939 GCTGAAGCGCTCGAAAAAGCCGGCATTACTCTTCTTGGCACATCATTTCA 1988
||||||.||||.||||||||.||||||.|.||.||.||.|||||.|||.|
RBAM_011240__ 1939 GCTGAACCGCTGGAAAAAGCGGGCATTCCGCTGCTCGGAACATCCTTTGA 1988
BSNT_01884___ 1989 AACGCTCGACGTGTTAGAGGATCGGGATCAATTCTATCAGCTTCTTGACG 2038
|||.||.||.|.|.|.|||||||||||||..||.||||||||.|||||.|
RBAM_011240__ 1989 AACCCTTGATGCGCTGGAGGATCGGGATCTGTTTTATCAGCTGCTTGATG 2038
BSNT_01884___ 2039 AGCTGGGATTGAAGCACGCAAAAGGAGAAATTGCTTATACAAAAGAAGAA 2088
|.||.|...||||.||.||.|||||.||||..||||||.|||||||||||
RBAM_011240__ 2039 ACCTTGACCTGAAACATGCCAAAGGCGAAACCGCTTATTCAAAAGAAGAA 2088
BSNT_01884___ 2089 GCCGCTTCAAAAGCGAG-TGAGATCGGCTATCCGGTGTTAATCCGCCCAT 2137
||..|...||||||.|| .|| ||||||||.||.|||.|.|||||.||.|
RBAM_011240__ 2089 GCAACGGAAAAAGCAAGCCGA-ATCGGCTACCCCGTGCTGATCCGTCCGT 2137
BSNT_01884___ 2138 CTTACGTTATCGGCGGAATGGGCATGATCATTGTTGACTCGCAAGCCCAG 2187
||||.||.|||||.||.||||||||||||||.|||||.||..||||.||.
RBAM_011240__ 2138 CTTATGTCATCGGTGGGATGGGCATGATCATCGTTGATTCAGAAGCGCAA 2187
BSNT_01884___ 2188 CTTTCTCAGCTGCTG---AATGATGAGGACAGCATGCCATATCCGATTTT 2234
.|.||..|.|||||| |||||.|.|| |||||||.|||||||||||
RBAM_011240__ 2188 ATGTCAGAACTGCTGGAAAATGAAGCGG---GCATGCCGTATCCGATTTT 2234
BSNT_01884___ 2235 GATTGATCAATATGTGTCTGGAAAGGAAGTCGAAATTGATTTGATTTCCG 2284
|||.|||||.||..|..|.|||||.|||.|.||.||.|||.|||||||||
RBAM_011240__ 2235 GATCGATCAGTACATTACAGGAAAAGAATTGGAGATCGATCTGATTTCCG 2284
BSNT_01884___ 2285 ACGGCGAGGATGTCTTTATCCCGACATATACCGAGCATATTGAACGGGCA 2334
||||..|.||.||.|||.|.|||||.||.||.|||||.||||||||.||.
RBAM_011240__ 2285 ACGGACATGAAGTATTTGTGCCGACTTACACAGAGCACATTGAACGCGCC 2334
BSNT_01884___ 2335 GGTGTCCATTCAGGGGACAGCTTTGCCATTCTTCCCGGGCCGTCCATCAC 2384
|||||||||||.||.|||||.|||||.||||||||.||.|||||..||||
RBAM_011240__ 2335 GGTGTCCATTCGGGCGACAGTTTTGCGATTCTTCCGGGTCCGTCTGTCAC 2384
BSNT_01884___ 2385 GAGC-GGGCTGCAGCAGGGCATGAAAGATGCGGCACAAAAAATTGCCCGA 2433
|.| |...||||||.|...||.|||||.||.||..|||||||.||...|
RBAM_011240__ 2385 -ACCTGATATGCAGCGGAATATAAAAGAGGCCGCCGAAAAAATCGCGGTA 2433
BSNT_01884___ 2434 AAACTTTCATTTAAAGGCATCATGAACATTCAATTTG----TGATCGACA 2479
|||||..|.|||||||||||||||||||||||.|||| |||| ||||
RBAM_011240__ 2434 AAACTGGCTTTTAAAGGCATCATGAACATTCAGTTTGTCATTGAT-GACA 2482
BSNT_01884___ 2480 ATGGAAACATACTCGTTCTTGAAGTGAATCCGAGAGCGAGCCGCACGGTT 2529
|.||..|.||.|||||||||||||||||||||.|.||.||||||||||||
RBAM_011240__ 2483 AAGGGGATATTCTCGTTCTTGAAGTGAATCCGCGGGCAAGCCGCACGGTT 2532
BSNT_01884___ 2530 CCTGTCGTCAGCAAAGTAATGGGCGTTCCGATGATTCCGCTCGCCACACG 2579
||||||||....|||||.|||||.||.||||||||.|||||.|||.|..|
RBAM_011240__ 2533 CCTGTCGTGTCTAAAGTGATGGGGGTGCCGATGATCCCGCTTGCCGCCAG 2582
BSNT_01884___ 2580 TCTGCTGGCGGGAGCGTCCTTAAAAG--ATCTAGATCCGGCAGTTCAAAA 2627
..|||||||.||.||.|||.|.|||| |||.|| ||.|..||||||||
RBAM_011240__ 2583 ATTGCTGGCCGGCGCTTCCCTTAAAGACATCAAG--CCCGAGGTTCAAAA 2630
BSNT_01884___ 2628 TCATCATGGAGTTGCCGTGAAGTTCCCTGTTTTTTCTTCTCATGCGATCC 2677
|||.||.|||...||.|||||.|||||.|||||||||||.||.||.||.|
RBAM_011240__ 2631 TCAGCACGGAACGGCAGTGAAATTCCCGGTTTTTTCTTCGCACGCCATTC 2680
BSNT_01884___ 2678 AGGATGTGGATATCAAGCTTGGGCCGGAAATGAAATCAACGGGAGAAGGC 2727
||||||||||..|.||||..||||||||||||||.||.||.|||||||||
RBAM_011240__ 2681 AGGATGTGGACGTAAAGCCCGGGCCGGAAATGAAGTCGACCGGAGAAGGC 2730
BSNT_01884___ 2728 ATGTGTGTCGCATATGATTCTAACAGCGCCTTGAAAAAAATCTA----TA 2773
|||||||||||.|.|||..|..|.||||||.||||||||||||| .|
RBAM_011240__ 2731 ATGTGTGTCGCGTTTGACGCAGAAAGCGCCCTGAAAAAAATCTACGCGCA 2780
BSNT_01884___ 2774 CAAGAGTCT-GGAGTCAAAAAGGAAGCATTTATTTGCAAAAC---GTTCC 2819
| |||| |||| .|||||||.|||||.|||.||.||..| |.|.|
RBAM_011240__ 2781 C----GTCTGGGAG-AAAAAAGGCAGCATCTATCTGGAAGGCTGTGATGC 2825
BSNT_01884___ 2820 GGAA----GATGTGCAGGAGTTAGCAGAAAACGCAGGTTTTACCGTTCAT 2865
|||| .|.|| ||| ||..||.|.||.||.|||||||| ||
RBAM_011240__ 2826 GGAATTGGAACGT-CAG------GCTCAAGAGGCGGGATTTACCGT--AT 2866
BSNT_01884___ 2866 GAAGGGACATTTGCCT------CATGGATGGAACAAGAAGAAAAATCGCT 2909
|.|..|| |||.| |||||...||.|.|.|.||.|||.||.|
RBAM_011240__ 2867 GCAAAGA----TGCGTTCCCGGCATGGGCAGAGCGAAAGGATAAAGCGGT 2912
BSNT_01884___ 2910 CCACATCAATCTGAGCGGTTCTGAAGAAGCACGCATAGAACGTTTGGAAG 2959
|||.||||||.|.|.....|||||||||||.||.|.|.||||..|.||||
RBAM_011240__ 2913 CCATATCAATTTCAATCACTCTGAAGAAGCGCGTAAACAACGGATTGAAG 2962
BSNT_01884___ 2960 CCATGACGCACGGCATCCCCGTCTTTACAGAAGAAGAAACTGTGCGGGCG 3009
|||||||||||||..|..|.||||||||.|||...|||||.||...|||.
RBAM_011240__ 2963 CCATGACGCACGGTGTGACGGTCTTTACTGAACCGGAAACCGTAAAGGCA 3012
BSNT_01884___ 3010 TTTTTACAAAGCGGTTCTGGCCATCCGCAGCCTGTATCTCTCAAAGACCT 3059
||||||..||||||.||.|||.|.||..||||||||||.||||||||.||
RBAM_011240__ 3013 TTTTTAGCAAGCGGCTCCGGCAAACCTGAGCCTGTATCGCTCAAAGATCT 3062
BSNT_01884___ 3060 CTATAAAAAGGAAGTGGCATCATGCACACAGTGA 3093
.|||.|||||||||||||||||||||||||.|.|
RBAM_011240__ 3063 TTATCAAAAGGAAGTGGCATCATGCACACAATAA 3096
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.