Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01892 and RBAM_011290

See Amino acid alignment / Visit BSNT_01892 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:37
# Commandline: needle
#    -asequence dna-align/BSNT_01892.1.9828.seq
#    -bsequence dna-align/RBAM_011290___yjaV.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01892-RBAM_011290___yjaV.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01892-RBAM_011290___yjaV.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01892
# 2: RBAM_011290___yjaV
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 616
# Identity:     385/616 (62.5%)
# Similarity:   385/616 (62.5%)
# Gaps:         107/616 (17.4%)
# Score: 1100.0
# 
#
#=======================================

BSNT_01892         1 ATGGAATCAACGCTGATTGTAGGTGCGGACGAATTTTTCGGCCTTTCATT     50
                     |||.|..||.|||||||..|.||.||.|||||||||.|||||||||||||
RBAM_011290__      1 ATGAAGACAGCGCTGATCATTGGAGCAGACGAATTTCTCGGCCTTTCATT     50

BSNT_01892        51 ATGTGAACGAATGATGGATGAAGGCATACATGTTGACGTTGTTCTGGCGG    100
                     .||.|||||..||||||||||.|||.|.||||||||.||..||.||||.|
RBAM_011290__     51 GTGCGAACGGTTGATGGATGAGGGCGTGCATGTTGATGTCATTTTGGCAG    100

BSNT_01892       101 AAACAGAAGATAAAATGAGACAAATGTACTTAGAAGAAAGACTCATGTGG    150
                     ||.|.||.||.||||.|||.||..||||.|||||||||.||.|.||||||
RBAM_011290__    101 AACCGGAGGACAAAACGAGGCAGCTGTATTTAGAAGAACGATTAATGTGG    150

BSNT_01892       151 CTTGGGAGAAATGAACTCTTTCGCCAGCT------TGAACACATTGGAGA    194
                     ||.|.||||||.|..||.|||   ||..|      ||||   ||.||.| 
RBAM_011290__    151 CTCGCGAGAAACGGGCTTTTT---CAAATAATAGATGAA---ATCGGTG-    193

BSNT_01892       195 CCAAAATTATGATACAATTTGTATC------CAGTTCGGAA---GTTTTT    235
                       ||||..|  ||||.| |.|||||      ||.|.|||.|   |.|.|.
RBAM_011290__    194 --AAAAGGA--ATACGA-TCGTATCTGCGTTCAATACGGGAGCGGGTGTC    238

BSNT_01892       236 TGCCTTTAGACCAATG--TGATTCTCCTTATATT---TTAGTATA---TG    277
                     |||||..|||  ||.|  |||..||  |||||||   || ||.||   ||
RBAM_011290__    239 TGCCTGAAGA--AAGGGCTGAGCCT--TTATATTGGATT-GTTTACAGTG    283

BSNT_01892       278 AAGAAGACCGAAAAGAATGGGAAAAA---------CGTGAAAAAACAGGC    318
                     |.||..||.|   |||.|||||||||         ||.||.|        
RBAM_011290__    284 AGGATCACGG---AGACTGGGAAAAAAACGGTCAGCGGGATA--------    322

BSNT_01892       319 TCGGAAAAAACCGTGATCCTGCCGAAAATGTATGGGCCATGGAAAGAAGA    368
                      |||.||||.|..|.|||||.||.....|.||.||.||.||||.|||||.
RBAM_011290__    323 -CGGCAAAAGCGATTATCCTTCCTCCCCTTTACGGTCCGTGGACAGAAGC    371

BSNT_01892       369 AACAGAGGAAGACG---GC-------TATTACACAAACGACGT-----GG    403
                     ||.|||.||.|.||   ||       |.|||.| |.|||..||     ||
RBAM_011290__    372 AAAAGAAGATGGCGAAAGCAGGATCTTTTTAGA-AGACGCAGTCTGCGGG    420

BSNT_01892       404 CTGACGAGT-TGC-TGAGATTCCTGTTAGAACCAAGC---CGTCATAG--    446
                     ||||.||.| .|| ||||                 ||   ||.||.||  
RBAM_011290__    421 CTGATGAATCAGCTTGAG-----------------GCATACGGCACAGAA    453

BSNT_01892       447 --CAAAGATCAGCTTTTTGAATTGCAAGTCACAGAGAAAACCTCAAAAGA    494
                       |.||.|||||.||.||....||.||.|.|.||| ||||.|.||||| |
RBAM_011290__    454 GACGAAAATCAGATTATTACCCTGGAAATAAAAGA-AAAAACGCAAAA-A    501

BSNT_01892       495 A--GAAGCAAAAACAAAAATTATCGAGTGGAAAAGACAATTTTCATCAAT    542
                     |  |||||..||..||||||.|..||.|||||||||||||||||||||||
RBAM_011290__    502 ACGGAAGCGGAAGAAAAAATCAAAGAATGGAAAAGACAATTTTCATCAAT    551

BSNT_01892       543 TTTCGACAAATATTAA    558
                     .|||||||..|.||||
RBAM_011290__    552 ATTCGACATTTTTTAA    567


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