Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01903 and RBAM_011360
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:38
# Commandline: needle
# -asequence dna-align/BSNT_01903___appD.1.9828.seq
# -bsequence dna-align/RBAM_011360___appD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01903___appD-RBAM_011360___appD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01903___appD-RBAM_011360___appD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01903___appD
# 2: RBAM_011360___appD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 993
# Identity: 796/993 (80.2%)
# Similarity: 796/993 (80.2%)
# Gaps: 12/993 ( 1.2%)
# Score: 3177.0
#
#
#=======================================
BSNT_01903___ 1 ATGAGCACACTTTTAGAAGTGAATAATTTAAAGACATATTTTTTCAGGAA 50
|||||||||||.|||||||||||||||||||||||.|||||||||||.||
RBAM_011360__ 1 ATGAGCACACTATTAGAAGTGAATAATTTAAAGACCTATTTTTTCAGAAA 50
BSNT_01903___ 51 AAAGGAGCCGATCCCTGCGGTTGACGGAGTCGATTTTCACATCAGCAAAG 100
.||..||||||||||.||.||.|||||.||.|||||||||||.|.|||||
RBAM_011360__ 51 GAAACAGCCGATCCCCGCAGTCGACGGGGTTGATTTTCACATTAACAAAG 100
BSNT_01903___ 101 GCGAAACCGTCGCGCTTGTAGGTGAATCGGGCTCCGGAAAAAGCATTACT 150
|||||||||||||.||||||||.|||||.|||||.||.||||||||.||.
RBAM_011360__ 101 GCGAAACCGTCGCTCTTGTAGGAGAATCCGGCTCGGGCAAAAGCATCACC 150
BSNT_01903___ 151 TCTTTATCAATTATGGGCCTCGTCCAAAGCTCAGGCGGAAAAATCATGGA 200
||..|.||.||||||||.||.|||||||||||.|||||||||||.|||||
RBAM_011360__ 151 TCGCTTTCTATTATGGGACTTGTCCAAAGCTCGGGCGGAAAAATTATGGA 200
BSNT_01903___ 201 CGGCTCTATTAAACTCGAAGACAAAGACCTCACCTCATTCACTGAAAACG 250
||||||.|||||.||.||||.||..|||||..||||.|||||.|||||||
RBAM_011360__ 201 CGGCTCGATTAAGCTTGAAGGCAGGGACCTGGCCTCCTTCACCGAAAACG 250
BSNT_01903___ 251 ATTATTGCAAAATCCGCGGTAACGAAGTATCCATGATCTTTCAGGAACCA 300
|.|||||||||||||||||.||.||.||.||.||||||||||||||.||.
RBAM_011360__ 251 AATATTGCAAAATCCGCGGAAATGACGTCTCTATGATCTTTCAGGAGCCC 300
BSNT_01903___ 301 ATGACCTCCCTTAATCCGGTGTTAACAATCGGAGAACAAATTACCGAAGT 350
|||||.|||||.||.||||||.|.||.|||||.|||||||||||||||||
RBAM_011360__ 301 ATGACTTCCCTGAACCCGGTGCTGACCATCGGCGAACAAATTACCGAAGT 350
BSNT_01903___ 351 GC-TGATTTACCATAAAAACATGAAGAAAAAAGAAGCCCGTC--AACGAG 397
|| ||| .|||||||||||.|||||.||||.||||| |||| ||..||
RBAM_011360__ 351 GCTTGA-ATACCATAAAAAAATGAATAAAAGAGAAG--CGTCCAAAAAAG 397
BSNT_01903___ 398 CTGTTGAACTCTTGCAGATGGTCGGTTTCTCCCGGGCGGAGCAAATTATG 447
|.|||||.||..||.|..|.|||||.||||||.|.|||||.|||.|.|||
RBAM_011360__ 398 CCGTTGAGCTTCTGGAACTCGTCGGATTCTCCAGAGCGGAACAAGTAATG 447
BSNT_01903___ 448 AAGGAGTACCCGCATCGGCTGTCCGGCGGTATGAGACAGAGGGTGATGAT 497
||.||.||.|||||.||.||.|||||.||.||||||||||||||||||||
RBAM_011360__ 448 AAAGAATATCCGCACCGTCTTTCCGGAGGGATGAGACAGAGGGTGATGAT 497
BSNT_01903___ 498 TGCCATCGCACTGAGCTGTAATCCTAAACTGCTCATTGCCGATGAACCAA 547
.||||||||.||.|||||.|||||.||.||.||.||.||.|||||.||.|
RBAM_011360__ 498 CGCCATCGCGCTCAGCTGCAATCCGAAGCTTCTGATCGCTGATGAGCCGA 547
BSNT_01903___ 548 CGACAGCGCTGGACGTGACAATACAAGCCCAGGTGCTGGAGCTCATGAAA 597
||||.|||||.||.|||||.|||||||||||.||..|||||||.||||||
RBAM_011360__ 548 CGACGGCGCTTGATGTGACGATACAAGCCCAAGTATTGGAGCTGATGAAA 597
BSNT_01903___ 598 GATCTCTGTCAGAAGTTCAATACATCGATTCTTCTCATCACACACGACTT 647
||.|||||..|.||.|||.||||.||.|||||.||.|||||.|||||.||
RBAM_011360__ 598 GACCTCTGCAAAAAATTCGATACTTCCATTCTGCTGATCACTCACGATTT 647
BSNT_01903___ 648 AGGTGTCGTGTCTGAGGCTGCCGATAGAGTGATTGTCATGTACTGCGGAC 697
||||||.||.||.||.||.|||||.||.|||||.||.|||||||||||||
RBAM_011360__ 648 AGGTGTGGTTTCCGAAGCCGCCGACAGGGTGATCGTGATGTACTGCGGAC 697
BSNT_01903___ 698 AAGTCGTAGAAAACGCTACAGTTGATGACTTATTTTTAGAACCGCTTCAT 747
||||||||||.|.|||.|..||.||.||||||||||||.|.||.||||||
RBAM_011360__ 698 AAGTCGTAGAGAGCGCGAGTGTGGAGGACTTATTTTTAAACCCTCTTCAT 747
BSNT_01903___ 748 CCGTATACAGAAGGCCTGCTTACGTCAATTCCTGTTATAGATGGAGAGAT 797
||||||||.||.||.|||.|.|..||.||.||.||.||||||||||||||
RBAM_011360__ 748 CCGTATACCGAGGGGCTGTTAAACTCCATACCGGTGATAGATGGAGAGAT 797
BSNT_01903___ 798 TGATAAATTAAATGCAATTAAAGGCAGTGTGCCTACACCGGATAATCTGC 847
|||||.||||||.||.||.|||||||||||.||.||||||||||||||.|
RBAM_011360__ 798 TGATACATTAAAAGCGATCAAAGGCAGTGTCCCGACACCGGATAATCTTC 847
BSNT_01903___ 848 CGCCGGGGTGCCGTTTTGCCCCAAGGTGCCCGAAAGCTATGGATAAGTGC 897
||...||.|||||.||.|||||.|||||..|.|||||.|||||.||.|||
RBAM_011360__ 848 CGGAAGGCTGCCGATTCGCCCCGAGGTGTTCAAAAGCGATGGACAAATGC 897
BSNT_01903___ 898 TGGACAAATCAGCCTTCGCTTTTGACACACAAAAGCGGAAGAACGGTGAG 947
...|||...|||||...|||..|.||.||..|||||||..|..|.||.||
RBAM_011360__ 898 AAAACAGGGCAGCCGGAGCTGATAACGCATGAAAGCGGCCGTTCTGTAAG 947
BSNT_01903___ 948 ATGCTTTTTATATGAGGAAGAGGGTGCCGAACAATC---ATGA 987
|||.|||||||||||||||||||||||| ||||| ||||
RBAM_011360__ 948 ATGTTTTTTATATGAGGAAGAGGGTGCC---CAATCAAAATGA 987
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