Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01905 and RBAM_011380

See Amino acid alignment / Visit BSNT_01905 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:38
# Commandline: needle
#    -asequence dna-align/BSNT_01905___appA.1.9828.seq
#    -bsequence dna-align/RBAM_011380___appA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01905___appA-RBAM_011380___appA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01905___appA-RBAM_011380___appA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01905___appA
# 2: RBAM_011380___appA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1674
# Identity:    1190/1674 (71.1%)
# Similarity:  1190/1674 (71.1%)
# Gaps:          87/1674 ( 5.2%)
# Score: 3919.5
# 
#
#=======================================

BSNT_01905___      1 ATGAAAAGACGGAAAACCGCACTGATGATGCTAAGTGTATTGATGGTTCT     50
                     ||||||..|||.||||.|||||||||||||||||||||.||.||||...|
RBAM_011380__      1 ATGAAATTACGTAAAAGCGCACTGATGATGCTAAGTGTTTTTATGGCGTT     50

BSNT_01905___     51 GGCCATCTTTTTATCAGCCTGCTCGGGATCAAAATCAAGCAACAGCAGCG    100
                     .||||||||..|.|||||||||||.||.||||||||   ||..||||.||
RBAM_011380__     51 TGCCATCTTCCTGTCAGCCTGCTCCGGCTCAAAATC---CACAAGCACCG     97

BSNT_01905___    101 CGAAA---AAATCAGCAGGCAAACCGCAGCAAGGCGGGGATTTGGTTGTT    147
                        ||   |||.|.|||||.||||||||..|||||||.|||||||||||.
RBAM_011380__     98 ---AATCCAAACCGGCAGGAAAACCGCAAAAAGGCGGAGATTTGGTTGTC    144

BSNT_01905___    148 GGTTCAATCGGAGAACCCACACTTTTTAACTCTCTGTATTCTACCGATGA    197
                     ||.||||.|||.|||||||||||||||||..|.||.|||||||||||||.
RBAM_011380__    145 GGGTCAACCGGGGAACCCACACTTTTTAATCCACTTTATTCTACCGATGT    194

BSNT_01905___    198 CGCAAGTACGGATATTGAAAATATGCTGTACAGCTTTTTAACGAAAACGG    247
                     .||||||.|.|||||||||...|||||.||||||...|||..|.||||.|
RBAM_011380__    195 TGCAAGTTCTGATATTGAAGGAATGCTTTACAGCACATTATTGGAAACTG    244

BSNT_01905___    248 ATGAAAAACTAAATGTGAAATTGTCACTCGCTGAAAGCATTAA-AGAATT    296
                     ||||.|||.||||.||.||...|||.||.||||||| .|.||| ||||..
RBAM_011380__    245 ATGAGAAATTAAACGTCAAGCCGTCGCTGGCTGAAA-AAGTAACAGAAGC    293

BSNT_01905___    297 AGACGGCGGCCTTGCATATGATGTGAAAATTAAAAAAGGCGTTAAGTTTC    346
                     .|||||.||..|..|.||||||||.|||.|.||||||||||||||.||.|
RBAM_011380__    294 TGACGGGGGATTAACGTATGATGTAAAACTGAAAAAAGGCGTTAAATTCC    343

BSNT_01905___    347 ATGACGGAAAAGAACTGACTGCAGACGACGTCGTATTTACGTACAGTGTC    396
                     ||||.||||||||||||||.||.||.||.||.||.||.||.|||||..||
RBAM_011380__    344 ATGATGGAAAAGAACTGACGGCCGATGATGTTGTTTTCACCTACAGCATC    393

BSNT_01905___    397 CCT-TTAAGCAAAGATTACAAGGGAGAACGCGGTTCAACATATGAAATGC    445
                     ||| |||| ||||||||||||.||.||.||.||.||....|.|||....|
RBAM_011380__    394 CCTCTTAA-CAAAGATTACAACGGTGAGCGTGGCTCGGGTTTTGAGTCCC    442

BSNT_01905___    446 TGAAATCCGTAGAAAAAAAAGGCGATTACGAAGTCTTGTTTAAGCTGAAA    495
                     |.|||||||||...||||||||..|.||.|||.|...||||||..||||.
RBAM_011380__    443 TTAAATCCGTAACGAAAAAAGGAAAATATGAAATTCAGTTTAAAATGAAG    492

BSNT_01905___    496 TATAAAGACGGTAATTTCTACAACAATG-CGT--TAGACAG-CACAGCTA    541
                     .|.|||||.|...||||||   |.|||| |||  |.||||| .||.|| |
RBAM_011380__    493 AAAAAAGATGCCTATTTCT---ATAATGTCGTTCTCGACAGTTACGGC-A    538

BSNT_01905___    542 TTCTGCCGAAACATATTCTCGGTAATGTTCCGATTGCTGATTTAGAAGAA    591
                     ||.||||.||||||||..|.|||||.||.|||.||||.|||.|.|.|||.
RBAM_011380__    539 TTTTGCCAAAACATATATTGGGTAAGGTCCCGGTTGCAGATCTGGGAGAG    588

BSNT_01905___    592 AATGAGTTTAACAGAAAGAAACCAATCGGTTCAGGACCATTTAAGTTTAA    641
                     |||||.||||||.|.||.||.|||||||||||.||.||.|||||||||..
RBAM_011380__    589 AATGAATTTAACCGTAAAAATCCAATCGGTTCCGGTCCGTTTAAGTTTGT    638

BSNT_01905___    642 GGAATGGAAGCAGGGCCAATATATTAAGCTCGAAGCGAATGATGATTACT    691
                     .||.|||||..|||||.|.|||.|.||.||.|||||.|||||||||||||
RBAM_011380__    639 TGAGTGGAAAAAGGGCGAGTATGTCAAACTGGAAGCAAATGATGATTACT    688

BSNT_01905___    692 TTGAAGGAAGACCGTATTTAGATACTGTGAC-GTATAAAGTC-ATTCCTG    739
                     |||..||.|||||.||..|.|||.|.||||| |||.|||  | ||.||||
RBAM_011380__    689 TTGGCGGCAGACCTTACCTTGATTCAGTGACAGTAAAAA--CAATACCTG    736

BSNT_01905___    740 ACGCAAATGCTGCCGTTGCTCAGCTGCAGGCAGGCGATATTAATTTCTTT    789
                     |..|.||.||.|||||.||.|||.|..|.||.||.||||||.|||||||.
RBAM_011380__    737 ATTCTAACGCGGCCGTGGCCCAGTTAAAAGCGGGGGATATTGATTTCTTC    786

BSNT_01905___    790 AATGTGCCCGCCAC------TGACTAC----AAAACGGCTGAAAAATTCA    829
                     ..||||||.|.|||      ||| |||    ||||||..||.|||..|.|
RBAM_011380__    787 GTTGTGCCGGGCACAGATTTTGA-TACGGTTAAAACGTTTGGAAATGTGA    835

BSNT_01905___    830 ACAACCTAAAAATCGTTACTGA-TTTGGCATTAAGTTATGTGTACATCGG    878
                     |...|    ||||     |||| .|||| .||||..||....||.|||||
RBAM_011380__    836 AGGTC----AAAT-----CTGACCTTGG-TTTAAACTACAGCTATATCGG    875

BSNT_01905___    879 GTGGAATGAAAAAAATGAATTATTCAAGGATAAAAAGGTTCGTCAAGCGC    928
                     .||||||||.|||||.||..|.||.||.||.|||||.||.|||||.||..
RBAM_011380__    876 CTGGAATGAGAAAAAAGAGATCTTTAAAGACAAAAAAGTGCGTCAGGCAT    925

BSNT_01905___    929 TGACAACCGCTCTTGACCGCGAGTCAATCGTCAGCCAAGTATTAGATGGA    978
                     ||||...||||||||||.|..||.||||.||....|||||..|..|.|||
RBAM_011380__    926 TGACTTACGCTCTTGACAGGCAGGCAATGGTGGATCAAGTGCTGAACGGA    975

BSNT_01905___    979 GACGGCGAGGTAGCTTACATTCCGGAAAGCCCTTTATCTTGGAACTATCC   1028
                     |||||..|||||||..|..||||.||.||.||..|.||.|||||.|||||
RBAM_011380__    976 GACGGTAAGGTAGCGGATGTTCCTGAGAGTCCGCTGTCATGGAATTATCC   1025

BSNT_01905___   1029 TAAAGATATAGATGTTCCGAAATTTGAGTACAACGAGAAAAAAGCGAAAC   1078
                     .||...||   |.||.||||.||||||.||.||...|||||||||.||.|
RBAM_011380__   1026 GAAGTCTA---AAGTGCCGACATTTGATTATAATCCGAAAAAAGCAAAGC   1072

BSNT_01905___   1079 AGATGCTTGCAGAAGCCGGCTGGAAAGATACGA--ACGGTGACGGCATTC   1126
                     ||.||||...|||||||||.|||.|||  ||.|  |||||||||||...|
RBAM_011380__   1073 AGCTGCTAAAAGAAGCCGGATGGGAAG--ACCATGACGGTGACGGCTACC   1120

BSNT_01905___   1127 TGGATAAAGACGGAAAGAAATTCTCGTTTACCCTTAAAACGAACCAAGGA   1176
                     |.||||||||||||||.||||||||.|||....||||||||||.|||||.
RBAM_011380__   1121 TTGATAAAGACGGAAAAAAATTCTCATTTGAAATTAAAACGAATCAAGGC   1170

BSNT_01905___   1177 AACAAAGTCCGTGAAGACATCGCTGTCGTCGTTCAGGAACAGCTGAAAAA   1226
                     ||.|||.|.||||||||..|.|||||.|||||||||.|.||..|.|||.|
RBAM_011380__   1171 AATAAAATTCGTGAAGATTTAGCTGTTGTCGTTCAGCAGCAATTAAAAGA   1220

BSNT_01905___   1227 AATCGGCATTGAAGTGAAAACCCAGATCGTTGAATGGAGCGCTCTCGTT-   1275
                     |.|.||.||.||.|..|||.|.|..||.|||||||..||.|    |||| 
RBAM_011380__   1221 AGTTGGAATCGAGGCTAAACCGCGAATTGTTGAATTCAGTG----CGTTA   1266

BSNT_01905___   1276 ---GAACAAATGAATCCTCCGAATTGGGATTTTGATGCAATGGTCATGAG   1322
                        |||||.|..|.|.|.||.||||||||||.|||.||..|..|..|..|
RBAM_011380__   1267 ATCGAACAGACAAGTGCCCCTAATTGGGATTATGACGCTCTTCTTCTCGG   1316

BSNT_01905___   1323 ATGGAGTTTATCCACATTCCCAGATCAATATGATATCTTCCATTCAAGCC   1372
                     |||||||.|..|.||.|||||.|||||.|....|||||||||||||||||
RBAM_011380__   1317 ATGGAGTCTTGCAACGTTCCCGGATCAGTTCTCTATCTTCCATTCAAGCC   1366

BSNT_01905___   1373 AGAT-TAAAAAGGGTTTGAACTACGTTTGGTATAAAAATGCCG-AAGCGG   1420
                     | || .|||||.||..||||..|..|.||||||||||| .||| |||..|
RBAM_011380__   1367 A-ATCGAAAAACGGGCTGAATAATATCTGGTATAAAAA-CCCGAAAGTCG   1414

BSNT_01905___   1421 ATAAACT-CATGAAAGATGCAAAATCAATCAGTGATAGAAAGCAGTAT-T   1468
                     ||||.|| |.|| ||||.||.||..||||.|..||.|||||  ||.|| .
RBAM_011380__   1415 ATAAGCTGCTTG-AAGAAGCGAAGACAATTACAGACAGAAA--AGAATAC   1461

BSNT_01905___   1469 CAAAAG-AATATGAGCAAATCTATCAAA-AAATTGCGGAAGATCAGCCCT   1516
                     |||||| |||||||..|.||.|| |||| ..|||||.|||||||||||.|
RBAM_011380__   1462 CAAAAGAAATATGAAGAGATATA-CAAATTGATTGCTGAAGATCAGCCGT   1510

BSNT_01905___   1517 ATACGTTCTTGTATTATCCTA--ACA---ACCATATGGCAATGCCGGAAA   1561
                     |.|..|||     ||||.|||  |||   ||||.|..||.||||||.|.|
RBAM_011380__   1511 ACAGCTTC-----TTATTCTATTACAATTACCACAGAGCGATGCCGAATA   1555

BSNT_01905___   1562 ATCTTGAAGGATACAAATATCATCCGAAACGTGATTTGTATAATATTGAA   1611
                     ||.|..||||.||...||..||.||.|||..|||.|||||.|||||||||
RBAM_011380__   1556 ATTTACAAGGCTATGTATTCCACCCTAAAAATGACTTGTACAATATTGAA   1605

BSNT_01905___   1612 AAATGGTGGCT---TGAAAAATAA   1632
                     |||||||||||   |.|||||||.
RBAM_011380__   1606 AAATGGTGGCTGGATCAAAAATAG   1629


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