Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01914 and RBAM_011430
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:39
# Commandline: needle
# -asequence dna-align/BSNT_01914___oppA.1.9828.seq
# -bsequence dna-align/RBAM_011430___oppA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01914___oppA-RBAM_011430___oppA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01914___oppA-RBAM_011430___oppA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01914___oppA
# 2: RBAM_011430___oppA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1651
# Identity: 1331/1651 (80.6%)
# Similarity: 1331/1651 (80.6%)
# Gaps: 29/1651 ( 1.8%)
# Score: 5324.5
#
#
#=======================================
BSNT_01914___ 1 ATGAAAAAACGTTGGTCGATTGTCACG-TTGATGCTCATTTTCACTCTCG 49
||||||||.||||||||.||||| |.| ||||||||.||.|||.|.||.|
RBAM_011430__ 1 ATGAAAAAGCGTTGGTCTATTGT-AGGTTTGATGCTTATCTTCTCGCTTG 49
BSNT_01914___ 50 TGCTGAGCGCGTGCGGCTTTGG---CGGCAGCGGATCAAACGGTGAGGGG 96
|..|.||.||||||||| || |.||.|||||||| ||.|..||.
RBAM_011430__ 50 TATTAAGTGCGTGCGGC---GGATTCAGCGGCGGATCA---GGCGGCGGT 93
BSNT_01914___ 97 AAAAAGGACAGTAAAGGAAAGACGACACTTAACATTAATATTAAAACTGA 146
|||||.||||..||||||.||||..|||||||.||.|||||||||||.||
RBAM_011430__ 94 AAAAAAGACACCAAAGGACAGACTTCACTTAATATCAATATTAAAACCGA 143
BSNT_01914___ 147 GCCGTTTTCCTTACATCCGGGATTGGCAAATGATTCAGTATCAGGCGGTG 196
||||||.||..|.|||||.||.||.||.||||||||.||.|||||.||.|
RBAM_011430__ 144 GCCGTTCTCACTGCATCCTGGTTTAGCGAATGATTCCGTTTCAGGAGGCG 193
BSNT_01914___ 197 TCATCCGTCAGACTTTTGAAGGATTGACACGTATCAA-TGCAGATGGTGA 245
|.|||||.|||||||||||||||||||||||..|.|| |.|| |.|||||
RBAM_011430__ 194 TAATCCGCCAGACTTTTGAAGGATTGACACGCGTAAACTCCA-AAGGTGA 242
BSNT_01914___ 246 GCCTGAAGAAGGCATGGCTTCTAAAATTGAAACGAGCAAGGACGGAAAGA 295
||||||||||||.|||||.||||||||||||||.|||||.||||||||||
RBAM_011430__ 243 GCCTGAAGAAGGAATGGCATCTAAAATTGAAACAAGCAAAGACGGAAAGA 292
BSNT_01914___ 296 CATATACATTTACCATTCGTGATGGTGTGAAATGGTCTAATGGGGACCCT 345
|.|||||||||||.||||||||.||||.||||||||||||.||.||||||
RBAM_011430__ 293 CCTATACATTTACGATTCGTGACGGTGCGAAATGGTCTAACGGCGACCCT 342
BSNT_01914___ 346 GTAACAGCACAAGATTTTGAATATGCTTGGAAATGGGCGCTTGATCCTAA 395
||.||.||.||.||||||||||||||.|||||||||||||||||.||.||
RBAM_011430__ 343 GTGACGGCGCAGGATTTTGAATATGCGTGGAAATGGGCGCTTGACCCGAA 392
BSNT_01914___ 396 TAACGAATCGCAATACGCTTACCAGCTCTACTACATAAAAGGTGCTGAAG 445
.||||||||.|||||||||||.||||||||||||||.|||||.|||||||
RBAM_011430__ 393 CAACGAATCACAATACGCTTATCAGCTCTACTACATCAAAGGCGCTGAAG 442
BSNT_01914___ 446 CGGCGAATACCGGCAAAGGCAGCCTAGACGATGT-GGCAGTAAAAGCTGT 494
|.||.|||||.||.|||||||...|.||.||||| ||| ||||||||.||
RBAM_011430__ 443 CTGCCAATACAGGAAAAGGCAAGATTGATGATGTAGGC-GTAAAAGCCGT 491
BSNT_01914___ 495 GAATGACAAAACGCTGAAGGTTGAATTAAATAACCCGACTCCATATTTCA 544
.|||||||||||..|.|||||||||.|.|||||||||||.||.|||||||
RBAM_011430__ 492 AAATGACAAAACATTAAAGGTTGAACTGAATAACCCGACACCTTATTTCA 541
BSNT_01914___ 545 CTGAATTAACTGCGTTCTATACGTATATGCCGATCAATAAGAAAATTGCA 594
|..||||||||.|.|||||||||||||||||||||||.||||||||.||.
RBAM_011430__ 542 CGCAATTAACTTCATTCTATACGTATATGCCGATCAACAAGAAAATCGCG 591
BSNT_01914___ 595 GAGAAAAATAAAAAGTGGAATACAAATGCCGGAGATGATTATGTATCAAA 644
||.|||.|||||||.|||||.|||||.||.||.||..|||||||.|||||
RBAM_011430__ 592 GAAAAACATAAAAACTGGAACACAAACGCGGGCGAAAATTATGTGTCAAA 641
BSNT_01914___ 645 CGGGCCGTTCAAAATGACGGCATGGAAACACAGCGGCTCTATTACTCTCG 694
|||.|||||||||||||||||.||||||||||||||.||.||.||.||||
RBAM_011430__ 642 CGGCCCGTTCAAAATGACGGCCTGGAAACACAGCGGTTCCATCACGCTCG 691
BSNT_01914___ 695 AAAAAAATGACCAGTATTGGGATAAAGACAAAGTCAAACTGAAGAAAATC 744
||||.||.||.||.|||||||||||||||...||.|||.|||||||||||
RBAM_011430__ 692 AAAAGAACGATCAATATTGGGATAAAGACGCTGTGAAATTGAAGAAAATC 741
BSNT_01914___ 745 GATATGGTTATGATCAACAATAACAATACGGAACTAAAAAAATTCCAAGC 794
.|.|||||.|||||.|||||||||||.||.|||||.|||||||||||.||
RBAM_011430__ 742 AACATGGTGATGATTAACAATAACAACACCGAACTGAAAAAATTCCAGGC 791
BSNT_01914___ 795 TGGCGAACTTGATTGGGCCGGTATGCCGCTCGGACAGCTTCCGACAGAAT 844
.||.||.|||||.|||||.||.|||||||||||.|||||||||||.||||
RBAM_011430__ 792 CGGTGAGCTTGACTGGGCAGGAATGCCGCTCGGCCAGCTTCCGACTGAAT 841
BSNT_01914___ 845 CCCTGCCGACCCTGAAAAAAGACGGTTCTTTACATGTTGAGCCGATTGCA 894
|.||||||||..|||||||||||||.|||.|.||.|||||.|||||.|||
RBAM_011430__ 842 CTCTGCCGACATTGAAAAAAGACGGATCTCTTCACGTTGAACCGATCGCA 891
BSNT_01914___ 895 GGAGTGTATTGGTACAAATTCAACACTGAAGCTAAGCCATTAGACAACGT 944
||.|||||||||||||||||||||||.|||||.||.||..|..||||.||
RBAM_011430__ 892 GGCGTGTATTGGTACAAATTCAACACAGAAGCGAAACCGCTGAACAATGT 941
BSNT_01914___ 945 CAATATCCGTAAAGCTTTAACATATTCGCTTGACCG-TCAGTCGATTGTT 993
|||.|||||||||||..|..|.|||.||.|.||||| || |||.||.||.
RBAM_011430__ 942 CAACATCCGTAAAGCCCTTGCTTATGCGATCGACCGCTC-GTCCATCGTA 990
BSNT_01914___ 994 AAAAACGTTACGCAAGGAGAGCAAATCCCGGCAATGGCTGCAGTGCCGCC 1043
|||||.||.|||||.||.||.||.||||||||.||||||||.||||||||
RBAM_011430__ 991 AAAAATGTAACGCAGGGCGAACAGATCCCGGCCATGGCTGCGGTGCCGCC 1040
BSNT_01914___ 1044 TACAATGAAGGGATTTGAGGATAACAAGGAAGGATACTTCAAAGACAATG 1093
..|||||||||||||..|||||||||...||||.||.|||||||||||||
RBAM_011430__ 1041 GTCAATGAAGGGATTCAAGGATAACACAAAAGGTTATTTCAAAGACAATG 1090
BSNT_01914___ 1094 ATGTCAAAACAGCAAAAGAATACCTTGATAAAGGCCTAAAAGAAATGGGC 1143
|.||||||.||||.|||||||.|.|..|||||||.||.||.|||.|.|||
RBAM_011430__ 1091 ACGTCAAATCAGCTAAAGAATTCTTAAATAAAGGACTGAAGGAATTAGGC 1140
BSNT_01914___ 1144 -TTAAGCAAGGCATCTGATTTGCCAAAAATCAAATTGTCTTACAACACTG 1192
|.||| ||.||.|||||..|.||....||||||.||||.|||||.||.|
RBAM_011430__ 1141 GTCAAG-AATGCCTCTGACCTTCCGGCGATCAAACTGTCCTACAATACGG 1189
BSNT_01914___ 1193 ATGACGCACACGCGAAAATCGCTCAAGCAGTACAAGAAATGTGGAAGAAA 1242
|||||||.||.|||||||||||.||.||.|||||.|||||||||||.||.
RBAM_011430__ 1190 ATGACGCGCATGCGAAAATCGCGCAGGCCGTACAGGAAATGTGGAAAAAG 1239
BSNT_01914___ 1243 AATTTAGGCGTTGATGTTGAGCTTGATAACTCAGAGTGGAATGTCTATAT 1292
||.||.|||||..|.|||||||||||||||||.||.||||||||.||.||
RBAM_011430__ 1240 AACTTGGGCGTCAAAGTTGAGCTTGATAACTCCGAATGGAATGTTTACAT 1289
BSNT_01914___ 1293 TGATAAGCTTCACAGCCAAGATTATCAAATCGGCCGTATGGGCTGGCTCG 1342
.||.|||||.||||||||..||||.||||||||.||||||||||||||||
RBAM_011430__ 1290 CGACAAGCTGCACAGCCAGAATTACCAAATCGGGCGTATGGGCTGGCTCG 1339
BSNT_01914___ 1343 GCGACTTCAATGATCCTATCAACTTCCTTGAATTGTTCCGTGACAAAAAC 1392
||||.|||||.|||||.|||||||||||.||||||||||||||.|||.|.
RBAM_011430__ 1340 GCGATTTCAACGATCCGATCAACTTCCTAGAATTGTTCCGTGATAAAGAA 1389
BSNT_01914___ 1393 GGAGGAAATAACGATACAGGCTGGGAAAATCCAGAATTCAAAAAGCTTCT 1442
||.|||||.||.|||||.||.||||||.||||.||.||.||||||||.||
RBAM_011430__ 1390 GGCGGAAACAATGATACCGGATGGGAAGATCCTGAGTTTAAAAAGCTGCT 1439
BSNT_01914___ 1443 GAATCAGTCACAAACTGAAACAGAT-----AAAACAAAACATGCAGAGCT 1487
|||.||.||.||...||||||.||| .||||..|.| |.|||
RBAM_011430__ 1440 GAACCAATCTCAGCTTGAAACGGATCCGGATAAACGTATC--GAAGA--- 1484
BSNT_01914___ 1488 GCTGAAAAAAGCAGAAGGTATTTTCATTGATGAAATGCCGGTTGCCCCAA 1537
||||||||||||||||...||.||.|||||.|.|||||||||.||.|||.
RBAM_011430__ 1485 GCTGAAAAAAGCAGAAAAGATCTTTATTGACGCAATGCCGGTCGCGCCAG 1534
BSNT_01914___ 1538 TCTATTTCCATACTGATACTTGGGTACAGGATGAAAACCTAAAAGGTGTT 1587
|.||||||.||||.|||.|||||||.||||||.|||||||.|||..|||.
RBAM_011430__ 1535 TTTATTTCTATACGGATCCTTGGGTGCAGGATAAAAACCTCAAAAATGTG 1584
BSNT_01914___ 1588 ATCATGCCAGGTACTGGTGAGGTTTATTTCAGAAACGCATATTTTAAATA 1637
|||.||.||||.||.||.||.|||||.||||||||.||.|.||||.||||
RBAM_011430__ 1585 ATCTTGACAGGAACAGGCGAAGTTTACTTCAGAAATGCTTCTTTTGAATA 1634
BSNT_01914___ 1638 A 1638
|
RBAM_011430__ 1635 A 1635
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