Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01917 and RBAM_011460

See Amino acid alignment / Visit BSNT_01917 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:39
# Commandline: needle
#    -asequence dna-align/BSNT_01917___oppD.1.9828.seq
#    -bsequence dna-align/RBAM_011460___oppD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01917___oppD-RBAM_011460___oppD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01917___oppD-RBAM_011460___oppD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01917___oppD
# 2: RBAM_011460___oppD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1081
# Identity:     861/1081 (79.6%)
# Similarity:   861/1081 (79.6%)
# Gaps:          17/1081 ( 1.6%)
# Score: 3458.0
# 
#
#=======================================

BSNT_01917___      1 GTGACACGCCTATTAGAAGTAAAAGATTTAGCAATTTCATTTAAAACATA     50
                     |||||||||.|..|||||||||||||.|||||.|||||||||||||||||
RBAM_011460__      1 GTGACACGCTTGCTAGAAGTAAAAGACTTAGCCATTTCATTTAAAACATA     50

BSNT_01917___     51 TGGCGGAGAGGTTCAGGCGATCCGCGGAGTGAATTTCCATCTGGATAAAG    100
                     .|||||||||||.|||||.||||||||.||||||||.|||.||.||||||
RBAM_011460__     51 CGGCGGAGAGGTACAGGCAATCCGCGGCGTGAATTTTCATTTGAATAAAG    100

BSNT_01917___    101 GAGAGACACTGGCGATTGTTGGAGAATCAGGTTCCGGAAAAAGTGTAACC    150
                     |||||||.||.|||||.||.||.||.||||||||||||||||||||.|||
RBAM_011460__    101 GAGAGACGCTTGCGATCGTGGGGGAGTCAGGTTCCGGAAAAAGTGTGACC    150

BSNT_01917___    151 TCTCAAGCGATTATGAAGCTGATTCCAATGCCTCCGGGTTATTTCAAACG    200
                     ||.||||||||||||||||||||.||.|||||.|||||.||.||.|||.|
RBAM_011460__    151 TCCCAAGCGATTATGAAGCTGATCCCGATGCCGCCGGGCTACTTTAAAAG    200

BSNT_01917___    201 CGGTGAGATCCTGTTTGAAGGAAAGGATCTAGTGCCGCTGTCCGAAAAAG    250
                     .||..||||.||.|||||.|||...|||.|.||||||.||||||||||||
RBAM_011460__    201 AGGACAGATTCTTTTTGACGGACGCGATATCGTGCCGATGTCCGAAAAAG    250

BSNT_01917___    251 AAATGCAAAATG----TCCGGGGAAAAGAGATCGGCATGATATTCCAAGA    296
                     |||||||    |    ||.|.|||||.||.|||||.|||||.||||||||
RBAM_011460__    251 AAATGCA----GGCCATCAGAGGAAAGGACATCGGGATGATTTTCCAAGA    296

BSNT_01917___    297 TCCGATGACCTCATTAAATCCAACGATGAAAGTCGGTAAACAAATTACGG    346
                     ||||||||||||..|.||.||.|||||||.||||||.|||||||||||||
RBAM_011460__    297 TCCGATGACCTCTCTGAACCCGACGATGAGAGTCGGCAAACAAATTACGG    346

BSNT_01917___    347 AAGTGCTTTTTAAACACGAGAAAATCTCAAAGGAAGCGGCTAAAAAACGC    396
                     ||||||||||.|||||.||.||||||||||..|||||.||.|||||.|||
RBAM_011460__    347 AAGTGCTTTTCAAACATGAAAAAATCTCAAGTGAAGCCGCGAAAAAGCGC    396

BSNT_01917___    397 GCGGTTGAACTGCTGGAATTAGTCGGTATCCCAATGCCGGAAAAGCGGGT    446
                     ||..|.||.|||||.||..|.|||||.||.||.|||||.|||||.|||.|
RBAM_011460__    397 GCCATAGAGCTGCTTGATCTCGTCGGGATTCCGATGCCCGAAAAACGGAT    446

BSNT_01917___    447 GAACCAATTTCCGCACGAATTTTCAGGCGGGATGAGGCAGCGGGTTGTCA    496
                     ...||||||.||.||.||||||||||||||||||||.|||||.||.||||
RBAM_011460__    447 CGGCCAATTCCCCCATGAATTTTCAGGCGGGATGAGACAGCGTGTCGTCA    496

BSNT_01917___    497 TTGCCATGGCGCTTGCAGCGAATCCGAAGCTTCTGATCGCCGATGAGCCG    546
                     |.||.|||||||||||.||.||||||||.||..|.||.||||||||.|||
RBAM_011460__    497 TCGCGATGGCGCTTGCGGCAAATCCGAAACTGTTAATTGCCGATGAACCG    546

BSNT_01917___    547 ACAACTGCACTTGATGTAACGATTCAAGCGCAAATTCTGGAATTGATGAA    596
                     |||||.||.||||||||.||||||||.||.||.||.||.||..|||||||
RBAM_011460__    547 ACAACAGCGCTTGATGTGACGATTCAGGCACAGATCCTTGAGCTGATGAA    596

BSNT_01917___    597 GGATTTGCAAAAGAAAATTGACACGTCCATCATCTTTATTACACACGATC    646
                     .|||.||||||||||||||||.|||||.|||||.|||||.||.||.||||
RBAM_011460__    597 AGATCTGCAAAAGAAAATTGATACGTCTATCATTTTTATCACGCATGATC    646

BSNT_01917___    647 TTGGTGTTGTGGCAAATGTTGCTGACCGGGTCGCTGTCATGTACGCGGGA    696
                     |.||.|||||.||.|||||.||.|||||||||||.||||||||||||||.
RBAM_011460__    647 TCGGCGTTGTCGCCAATGTCGCCGACCGGGTCGCCGTCATGTACGCGGGT    696

BSNT_01917___    697 CAGATTGTAGAAACTGGTACGGTAGACGAAATCTTCTACGATCCGAGACA    746
                     |||.|.||.|||.|.||.|||||.||.||||||||.||.||||||.|.||
RBAM_011460__    697 CAGGTCGTCGAATCGGGCACGGTGGATGAAATCTTTTATGATCCGCGCCA    746

BSNT_01917___    747 TCCGTACACTTGGGGGCTTCTTGCATCCATGCCGACACTGGAAAGTTCAG    796
                     ||||||.||.|||||.||.|||||.||.|||||.|..|||||.||..|.|
RBAM_011460__    747 TCCGTATACGTGGGGACTGCTTGCCTCAATGCCTAGCCTGGACAGCACCG    796

BSNT_01917___    797 GAGAGGAAGAGCTGACTGCCATTCCGGGCACACCGCCTGATTTGACAAAC    846
                     ...|||||.|.|||||.||.||.||||||||.|||||||||.||||.||.
RBAM_011460__    797 ATCAGGAAAAACTGACGGCTATCCCGGGCACGCCGCCTGATCTGACGAAT    846

BSNT_01917___    847 CCGCCAAAAGGAGATGCTTTTGCCCTGCGGAGCCCTTATGCGATGAAAAT    896
                     ||.||.|||||.|||||.|||||.||.||.|||.|.||||||||||||||
RBAM_011460__    847 CCTCCGAAAGGGGATGCATTTGCGCTCCGCAGCTCATATGCGATGAAAAT    896

BSNT_01917___    897 CGATTTTGAACAGGAGCCGCCAATGTTTAAGGTATCTGATACTCATTATG    946
                     .||.|||||||||||.|||||.||||.|||.||.||||||||.||||..|
RBAM_011460__    897 TGACTTTGAACAGGAACCGCCGATGTATAAAGTGTCTGATACGCATTTCG    946

BSNT_01917___    947 TCAAATCGTGGCTGCTTCATCCCGACGCGCCAAAGGTAGAGCCGCCAGAA    996
                     |.|||||||||||.||.|||||.||.|||||.|||||.|||||.||.|||
RBAM_011460__    947 TGAAATCGTGGCTTCTGCATCCTGATGCGCCTAAGGTCGAGCCCCCTGAA    996

BSNT_01917___    997 GCGGTAAAAGCGAAAATGCGTAAACTGGCAAACACGTTTGAAAAACCTGT   1046
                     |||||.||.||.|||||.|||.|.||..|.||.||||.|.|..|.|||||
RBAM_011460__    997 GCGGTGAAGGCTAAAATCCGTCAGCTTCCGAATACGTATCAGCATCCTGT   1046

BSNT_01917___   1047 CTTAGTGAGAGAAGGTG-----AATGA----   1068
                     .|||.|||..|||||||     |||||    
RBAM_011460__   1047 TTTAATGAAGGAAGGTGAAAAAAATGACTGA   1077


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