Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01940 and RBAM_011600

See Amino acid alignment / Visit BSNT_01940 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:41
# Commandline: needle
#    -asequence dna-align/BSNT_01940___yjbL.1.9828.seq
#    -bsequence dna-align/RBAM_011600___yjbL.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01940___yjbL-RBAM_011600___yjbL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01940___yjbL-RBAM_011600___yjbL.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01940___yjbL
# 2: RBAM_011600___yjbL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 375
# Identity:     293/375 (78.1%)
# Similarity:   293/375 (78.1%)
# Gaps:          15/375 ( 4.0%)
# Score: 1132.5
# 
#
#=======================================

BSNT_01940___      1 ATGCAAAACAGAATCGAAATTTTGAATGCAACATTATCGGATGATCAGCT     50
                     ||||||||.|||||.|||||....||||||.|||||.|.||.||...|||
RBAM_011600__      1 ATGCAAAAGAGAATTGAAATCCAAAATGCATCATTAACAGAAGACGCGCT     50

BSNT_01940___     51 TCGCCTTACTTGTCAGACAGA-AGG----AAACGAAGCGGAACGC-AAGC     94
                     .|||.|.|..||     |.|| |||    ||.||.|||||||||| ||||
RBAM_011600__     51 CCGCTTGAAGTG-----CGGAGAGGACTTAAGCGGAGCGGAACGCAAAGC     95

BSNT_01940___     95 CGTCAGGTCAAATGCTTGTTGATTCTGACCACTTTGCTTTTGTATACATA    144
                     | |||||||||||||||||||||||.||.|||||||||||||||||||||
RBAM_011600__     96 C-TCAGGTCAAATGCTTGTTGATTCCGATCACTTTGCTTTTGTATACATA    144

BSNT_01940___    145 CTTGAATTAGCTGATTCTTTTGAATATGTCATTATAAAGGAACATGTATG    194
                     |||||||.||||||.|||||||||||||||||||||||.||||||.|.||
RBAM_011600__    145 CTTGAATCAGCTGACTCTTTTGAATATGTCATTATAAAAGAACATATCTG    194

BSNT_01940___    195 GCCGGAACTGAAGCAGGCCCATGCACAAAAAATACCGGTTGTTTTAGAGG    244
                     ||||||.|||||..|.|||...|..||||.||.|||||..||..|.||||
RBAM_011600__    195 GCCGGATCTGAAAGAAGCCTTAGACCAAAGAAAACCGGCGGTCCTTGAGG    244

BSNT_01940___    245 CAGGAGACCAAACAATTGAACTGGCAGGCCTGCATGAGGAGCTGGAATAT    294
                     |.||.|...||||..|||||||..||||.||||||||.||.||.||.|||
RBAM_011600__    245 CCGGCGGAAAAACGGTTGAACTTTCAGGGCTGCATGAAGAACTCGATTAT    294

BSNT_01940___    295 CTTTTAGAAAATATAAAAGATAATGCAAACTATGGAGAAGAAATGGAAGA    344
                     |||.|.||||||||.|||||||||||||||||.||   |||.||||||||
RBAM_011600__    295 CTTCTTGAAAATATTAAAGATAATGCAAACTACGG---AGATATGGAAGA    341

BSNT_01940___    345 AAAAGTGAAACACGTGTTTTTATAG    369
                     ||||||||||.||||.|||.|.|||
RBAM_011600__    342 AAAAGTGAAAAACGTATTTCTTTAG    366


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