Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01951 and RBAM_011690

See Amino acid alignment / Visit BSNT_01951 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:42
# Commandline: needle
#    -asequence dna-align/BSNT_01951___thiS.1.9828.seq
#    -bsequence dna-align/RBAM_011690___thiS.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01951___thiS-RBAM_011690___thiS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01951___thiS-RBAM_011690___thiS.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01951___thiS
# 2: RBAM_011690___thiS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 218
# Identity:     155/218 (71.1%)
# Similarity:   155/218 (71.1%)
# Gaps:          28/218 (12.8%)
# Score: 545.0
# 
#
#=======================================

BSNT_01951___      1 ATGATGCTACAGCTGAACGGTAAAGACGTGAAGTG---GGA----AAAAG     43
                     |||||.||.|||||||||||.|||.|    ||.||   |||    |||.|
RBAM_011690__      1 ATGATCCTTCAGCTGAACGGAAAACA----AATTGATTGGAATCGAAATG     46

BSNT_01951___     44 ACGCAGGTACAATTCAAGACCTGCTGGCGTCTTATCAGCTTGATAATAAA     93
                     |   .||.||..||||.||..||||.|..||.||.|||||||||.|.|.|
RBAM_011690__     47 A---GGGGACGGTTCAGGATTTGCTTGAATCGTACCAGCTTGATCAAAGA     93

BSNT_01951___     94 ATCGTTATCGTGGAAAGAAATAAAGAAATAATCGGGAAAGAACG--CTAT    141
                     |||||..|.|||||.||||||||||||||.||  .||||.||.|  .|||
RBAM_011690__     94 ATCGTAGTTGTGGAGAGAAATAAAGAAATCAT--TGAAAAAAAGAATTAT    141

BSNT_01951___    142 -----CACGAGGTTGAGCTTTGTGATCGTGATGTCATTGAAATTGTCCAT    186
                          .|||||.|||     |||||.||.||||||||.||||||||||||
RBAM_011690__    142 GAAAATACGAGTTTG-----TGTGACCGCGATGTCATAGAAATTGTCCAT    186

BSNT_01951___    187 TTTGTAGGAGGCGGATGA    204
                     ||||||||||||||||||
RBAM_011690__    187 TTTGTAGGAGGCGGATGA    204


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