Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_01964 and RBAM_011770

See Amino acid alignment / Visit BSNT_01964 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:43
# Commandline: needle
#    -asequence dna-align/BSNT_01964___cotX.1.9828.seq
#    -bsequence dna-align/RBAM_011770___cotX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01964___cotX-RBAM_011770___cotX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01964___cotX-RBAM_011770___cotX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01964___cotX
# 2: RBAM_011770___cotX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 569
# Identity:     313/569 (55.0%)
# Similarity:   313/569 (55.0%)
# Gaps:         154/569 (27.1%)
# Score: 861.5
# 
#
#=======================================

BSNT_01964___      1 ATGGAATCAAGACCTTACTCATGGGTTGCCCTAGATAATTCATGTACACA     50
                     ||||||...|||||.|||||.||||||||.||.|||..|..||||..|||
RBAM_011770__      1 ATGGAAAGCAGACCATACTCTTGGGTTGCACTTGATCCTGAATGTGAACA     50

BSNT_01964___     51 CCCGGGTAGCGGCTATAAAAG--------------AGAAGCGGTTTGTCA     86
                     .|||.| ||..|..|.|.|||              |||.||.||      
RBAM_011770__     51 TCCGCG-AGAAGAAAAAGAAGAAAAAGAAGGAAGAAGATGCAGT------     93

BSNT_01964___     87 TGACGTTTGTTCT---GGA---------GGAGAAGATGCTAACGCATT--    122
                         |||||.|.|   |||         ||.|||||   |||.||.||  
RBAM_011770__     94 ----GTTTGCTGTAACGGACACGGGTTCGGCGAAGA---TAATGCCTTCA    136

BSNT_01964___    123 ----TCAAGATTTTGATCA-GCTAAGCCTTAACAAACAAACATCTGAAGA    167
                         .|||||..|.|..|| ||.|| .||.|||||||||...||||||||
RBAM_011770__    137 TCGACCAAGACCTGGCACAGGCGAA-TCTCAACAAACAAGTTTCTGAAGA    185

BSNT_01964___    168 AATGATTATCGTTAGAGATTCTTGCGACATTGATGTTACGTCTACTGACA    217
                     |..||||||..|.|||||||||||.||.|||.|.||.||.||.||.||  
RBAM_011770__    186 AGCGATTATTATCAGAGATTCTTGTGATATTAACGTGACATCGACAGA--    233

BSNT_01964___    218 CTCAAGTTGCTGCATCCATTCAAGCCGCCCTCCAAACTGCTGTCATTACA    267
                                     .|||||.||.|.|      |||.|.|||||.|||
RBAM_011770__    234 ----------------TATTCAGGCAGTC------ACTTCAGTCATGACA    261

BSNT_01964___    268 ---ATT------------GTAA-----------ACTTATCAATAGCAGAC    291
                        |||            ||||           |||  |||||.||.|||
RBAM_011770__    262 GCGATTAATGCAGCAGTCGTAACGGCCACTCTCACT--TCAATCGCTGAC    309

BSNT_01964___    292 GGTGATTTAGCAGATCAAGTCATC---------------CAAGACTTAGT    326
                     ||               |||||||               |||||||||.|
RBAM_011770__    310 GG---------------AGTCATCGCTGAATTGGTCGCACAAGACTTATT    344

BSNT_01964___    327 GCAACAATCTGTTAACAAGC-AGTCAAACCGTCAAAAACTAGTGATTGAA    375
                     |||.|.|.|.|.||||||.| |.|| ||||||||||||||..|.||.|||
RBAM_011770__    345 GCAGCTAACAGCTAACAAACAAATC-AACCGTCAAAAACTGCTCATCGAA    393

BSNT_01964___    376 AACTCTAGAAATGTTAATGTCACAACAACCGATACAGATATTGCACTATC    425
                     |||||..|....||.||.||.||||||...|||.|.|||||.|||..||.
RBAM_011770__    394 AACTCCCGCGGCGTAAACGTGACAACAGTAGATGCCGATATCGCAACATT    443

BSNT_01964___    426 GATCCAAACACTGACACAGACAC---TTGCCGCTACAATTATCGCAGT--    470
                     ||||..||||...|||.|.||||   |||||         |||..|||  
RBAM_011770__    444 GATCTCAACAGCAACAAATACACTGATTGCC---------ATCTTAGTCA    484

BSNT_01964___    471 ------TGGAATCCTCTAA    483
                           |.|  ||||||||
RBAM_011770__    485 TCACCCTCG--TCCTCTAA    501


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.