Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_01979 and RBAM_011920

See Amino acid alignment / Visit BSNT_01979 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:44
# Commandline: needle
#    -asequence dna-align/BSNT_01979___yjcH.1.9828.seq
#    -bsequence dna-align/RBAM_011920___ycjH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_01979___yjcH-RBAM_011920___ycjH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01979___yjcH-RBAM_011920___ycjH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01979___yjcH
# 2: RBAM_011920___ycjH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 732
# Identity:     554/732 (75.7%)
# Similarity:   554/732 (75.7%)
# Gaps:          18/732 ( 2.5%)
# Score: 2054.5
# 
#
#=======================================

BSNT_01979___      1 ATGGCACCGAAAAACGGCA-CAGTGCAAGAAAAGAAATTCTTTTCAAAAG     49
                     .|||||.|.||||||||.| || |.||.||.||.|||.|.||.||..|.|
RBAM_011920__      1 GTGGCATCAAAAAACGGAATCA-TTCATGAGAAAAAACTTTTCTCCCATG     49

BSNT_01979___     50 AGCTTAACGAGGAAATGACCTTGCTTGTTTATCTGCCGTCCAACTACTCC     99
                     |||||.|.||||||||||||.|..|.||.||.|||||..|||.||.||||
RBAM_011920__     50 AGCTTGAAGAGGAAATGACCGTTTTGGTCTACCTGCCCGCCACCTTCTCC     99

BSNT_01979___    100 CCGCTTTATAAATACCATGTCATTATCGCGCAGGACGGCCACGATTATTT    149
                     ||.||.||||||||.|||...||.|||||.|||||||||||.||||||||
RBAM_011920__    100 CCTCTGTATAAATATCATACGATCATCGCTCAGGACGGCCATGATTATTT    149

BSNT_01979___    150 CAGGCTGGGGAGAATCGGCAGACAGGTTGAGGAATTGCTGTCGAAACGCG    199
                     |||..|.|||||||||||..|.||||..||.||..|..||||.|||.|.|
RBAM_011920__    150 CAGATTAGGGAGAATCGGGCGGCAGGCGGAAGAGCTTATGTCAAAAGGGG    199

BSNT_01979___    200 AAATAGACCGGAGCATTATTATCGGTGTTCCTTATAAGGATGTAAAAGAG    249
                     ||||.|||||..||||.||||||||.||.||||||||..||||....|||
RBAM_011920__    200 AAATTGACCGCTGCATCATTATCGGCGTCCCTTATAAAAATGTGCGGGAG    249

BSNT_01979___    250 CGCAGAAACACCTATCATCCGGAGGGTTCAAAATTTTCGGCT--TATAAA    297
                     ||.||||||||.||.|||||.||.||.||.||  .||||.||  |||||.
RBAM_011920__    250 CGAAGAAACACATACCATCCAGAAGGCTCTAA--GTTCGCCTCATATAAG    297

BSNT_01979___    298 CGGTTCATCGCCCATGAGCTCGTTCCTTTTGCAGATGATGAGTATCCAAC    347
                     |||||||||||..|||||||||||||||||...||..|.||.||.||.||
RBAM_011920__    298 CGGTTCATCGCAAATGAGCTCGTTCCTTTTATCGACAAAGAATACCCGAC    347

BSNT_01979___    348 CTATCAGATCGGTTACGGCCGAACGCTGATCGGTGATTCGCTCGGAGCAA    397
                     .|||||..||||.||||||||.||..|||||||.|||||.|||||.|.||
RBAM_011920__    348 TTATCAAGTCGGATACGGCCGCACCATGATCGGGGATTCCCTCGGCGGAA    397

BSNT_01979___    398 CCGTGTCACTTATGACAGCGCTTGATTATCCGAATATGTTTGGCAACATC    447
                     ||||.||.||.|||||.|||.||||.||||||||.||||||||.|||.||
RBAM_011920__    398 CCGTTTCGCTCATGACGGCGATTGACTATCCGAACATGTTTGGAAACGTC    447

BSNT_01979___    448 ATCATGCAGTCTCCCTATGTTGACAAACACGTACTAGAAGCCGTAAAACA    497
                     ||||||||||||||.|||||||||...|||||.||.||.|||||....||
RBAM_011920__    448 ATCATGCAGTCTCCGTATGTTGACGGGCACGTGCTGGATGCCGTCCGGCA    497

BSNT_01979___    498 GTCAGACGATATCAAACACCTCTCTATTTATCACCAAATCGGAACAAAAG    547
                     |||.||.|||.|||||||..|.||..|||||||.|||||||||..|||||
RBAM_011920__    498 GTCGGAGGATCTCAAACAGATTTCCGTTTATCATCAAATCGGAGAAAAAG    547

BSNT_01979___    548 AAACTGACGTCCACACGACAGACGGGAACATTCTGGACTTTACAGAACCG    597
                     ||||.|.|||.||||||||.|||||..|..||||.||.||.||.|..|||
RBAM_011920__    548 AAACCGGCGTTCACACGACGGACGGCCAGGTTCTTGATTTCACCGCGCCG    597

BSNT_01979___    598 AACCGGGAGCTGAAACAGCTGCTGGAGAAAAAGCTTTCCGA------TTA    641
                     |||...|||||.||||||||||||||.|..||.|..||.||      .||
RBAM_011920__    598 AACGAAGAGCTTAAACAGCTGCTGGAAAGCAAACAGTCTGAATACACGTA    647

BSNT_01979___    642 TGATTTCGAGCCATTTGACGGAGACCACAAATGGACATACTGGCAGCCGC    691
                     |||     |.|| ||.|||||.||.||.||||||||.|||||||||||||
RBAM_011920__    648 TGA-----AACC-TTCGACGGGGATCATAAATGGACCTACTGGCAGCCGC    691

BSNT_01979___    692 TCATCACCCCGGCGCTGAAAAAAATGCTTTAA    723
                     |||||||.||||||||||||||||||||.|||
RBAM_011920__    692 TCATCACGCCGGCGCTGAAAAAAATGCTGTAA    723


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