Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_01982 and RBAM_011940
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:44
# Commandline: needle
# -asequence dna-align/BSNT_01982___yjcJ.1.9828.seq
# -bsequence dna-align/RBAM_011940___yjcJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_01982___yjcJ-RBAM_011940___yjcJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_01982___yjcJ-RBAM_011940___yjcJ.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_01982___yjcJ
# 2: RBAM_011940___yjcJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1189
# Identity: 911/1189 (76.6%)
# Similarity: 911/1189 (76.6%)
# Gaps: 29/1189 ( 2.4%)
# Score: 3440.5
#
#
#=======================================
BSNT_01982___ 1 TTGAGTAAACACAATTGGACGCTGGAAACCCAGCTCGTGCACAATCCATT 50
.|||||||.|||||||||||||||||||||||||||||||||||||||||
RBAM_011940__ 1 ATGAGTAATCACAATTGGACGCTGGAAACCCAGCTCGTGCACAATCCATT 50
BSNT_01982___ 51 TAAAACAGACGGCGGAACCGGGGCGGTCAGTGTACCGATTCAGCACGCCT 100
||||||||||||.|..|||||.||.|||||.||.|||||.|||||.||.|
RBAM_011940__ 51 TAAAACAGACGGAGCTACCGGAGCCGTCAGCGTCCCGATCCAGCATGCTT 100
BSNT_01982___ 101 CGACTTTTCACCAATCTTCATTTGAAGAGTTCGGGGCATATGATTACAGC 150
|.||.||.||.||.||||||||||||||.||||||.|||||||.||||||
RBAM_011940__ 101 CCACATTCCATCAGTCTTCATTTGAAGAATTCGGGACATATGACTACAGC 150
BSNT_01982___ 151 CGCTCTGGCACGCCGACAAGAACAGCTCTCGAAGAAACAATTGCCGCACT 200
|||||.|||||.||||||||||||||.||.||||||||.||.||.|..||
RBAM_011940__ 151 CGCTCAGGCACACCGACAAGAACAGCGCTTGAAGAAACGATCGCAGGTCT 200
BSNT_01982___ 201 GGAAGGCGGAACAAGAGGATTTGCTTTCAGTTCAGGCATGGCTGCCATCT 250
.|||||||||||.|||||.|||||||||||.||.||.|||||.||.||.|
RBAM_011940__ 201 TGAAGGCGGAACGAGAGGCTTTGCTTTCAGCTCGGGAATGGCGGCGATTT 250
BSNT_01982___ 251 CAACAGCATTTTTACTGCTGTCACAGGGTGATCACGTTCTTGTGACAGAA 300
|.||.||||||.|.||..|.||.||.||.||.||.||.|||||.||.||.
RBAM_011940__ 251 CGACGGCATTTCTGCTCTTATCCCAAGGCGACCATGTCCTTGTCACGGAG 300
BSNT_01982___ 301 GATGTATACGGCGGAACCTTCCGTATGGTGACAGAGGTGCTGACCCGGTT 350
|||||.|||||||||||.|||||.||||||||.|||||.|||.||||.||
RBAM_011940__ 301 GATGTGTACGGCGGAACATTCCGCATGGTGACTGAGGTTCTGTCCCGTTT 350
BSNT_01982___ 351 TGGCATTGAGCATACGTTTGTCGACATGACGGATCGTAATGAAGTGG--- 397
.||.||.||.|||||.||||||||.|||||||| .|..||||.||
RBAM_011940__ 351 CGGGATCGAACATACCTTTGTCGATATGACGGA---CACAGAAGCGGTCG 397
BSNT_01982___ 398 --CGCGGAGCATCAAGCCGAATACAAAGGTCATTTATATGGAGACGCCAT 445
|||| .||||..|||||||||.||.|.|||.||||||||.||.||.|
RBAM_011940__ 398 CCCGCG--CCATCCGGCCGAATACGAAAGCCATCTATATGGAAACACCGT 445
BSNT_01982___ 446 CAAATCCGACACTTGGGATTACGGATATTAA-AGCGATTGTTCAGCTTGC 494
||||.|||||.||.||.||.||||||||||| .||| |.||..|.||.||
RBAM_011940__ 446 CAAACCCGACGCTCGGCATCACGGATATTAAGGGCG-TCGTCAAACTGGC 494
BSNT_01982___ 495 AAAAGAAAACGGCTGTCTGACCTTTCTGGACAATACATTCATGACACCGG 544
|||.||..|||||||||||||.|..||.||||||||.||.|||||.||.|
RBAM_011940__ 495 AAAGGATCACGGCTGTCTGACATACCTTGACAATACTTTTATGACGCCTG 544
BSNT_01982___ 545 CACTGCAGCGTCCGCTTGACCTCGGCGTGGATATTGTACTTCACAGCGCG 594
|.||||||||.||||||||.||||||||.|||||.||.||||||||.|||
RBAM_011940__ 545 CTCTGCAGCGGCCGCTTGATCTCGGCGTAGATATCGTGCTTCACAGTGCG 594
BSNT_01982___ 595 ACAAAATTCTTAAGCGGACACAGCGATGTGCTCTCAGGTTTGGCTGCTGT 644
||.|||||.||||||||.||||||||.|||||.|||||..|.||.||.||
RBAM_011940__ 595 ACGAAATTTTTAAGCGGCCACAGCGACGTGCTGTCAGGCCTTGCCGCCGT 644
BSNT_01982___ 645 CAAAGATGAAGAGCTTGGGAAGCAGCTGTATAAGCTGCAAAACGCGTTCG 694
.||||||||||||||.||.||.|||||||||||||||||||||.|.||.|
RBAM_011940__ 645 AAAAGATGAAGAGCTCGGCAATCAGCTGTATAAGCTGCAAAACTCATTTG 694
BSNT_01982___ 695 GCGCCGTCCTTGGCGTACAGGATTGCTGGCTTGTCCTGCGCGGATTAAAA 744
|.||.||.||.|||||.|||||.||||||||.||..||.|.||.||||||
RBAM_011940__ 695 GAGCGGTGCTCGGCGTTCAGGACTGCTGGCTCGTATTGAGAGGCTTAAAA 744
BSNT_01982___ 745 ACATTGCAGGTCCGTTTAGAGAAGGCGAGTCAAACAGCCCAGCGGCT--- 791
||||||||||||.|..|.||.||.|||||.|..||.||..|||||||
RBAM_011940__ 745 ACATTGCAGGTCAGACTGGAAAAAGCGAGCCGGACGGCTGAGCGGCTGTC 794
BSNT_01982___ 792 TGCGGAATTTTTCCAGAAGCATCCGGCGGTGAAGCGCGTGTATTATCCGG 841
||| ..|||||..|.|| |||||.||..|.||...|||.||.|||||.|
RBAM_011940__ 795 TGC-CTATTTTGACGGA--CATCCCGCCATCAAAAACGTTTACTATCCCG 841
BSNT_01982___ 842 GACTGGCTGATCATCCCGGCGCTGAAACCCATAAAAGCCAGTCAACGGGA 891
|.||.||.|..||.||.||.||.||.|||||||||.|.||..|.|..|||
RBAM_011940__ 842 GCCTTGCAGGACACCCGGGAGCCGATACCCATAAACGGCAAGCGAGCGGA 891
BSNT_01982___ 892 GCGGGCGCCGTGCTATCTTTTGAGCTTGAAAGCAAAGAGGCCGTTAAGAA 941
|||||||||||.||.||.|||||..|.|||||||||||.|||||.||.||
RBAM_011940__ 892 GCGGGCGCCGTCCTGTCCTTTGAATTGGAAAGCAAAGAAGCCGTCAAAAA 941
BSNT_01982___ 942 GTTAGTCGAGAATGTGTCACTCCCAGTCTTCGCTGTCAGCCTTGGCGCCG 991
|.|.|||||.||.||.||.||.||.||.||.||.||||||||.|||||||
RBAM_011940__ 942 GCTGGTCGAAAACGTATCGCTTCCGGTATTTGCCGTCAGCCTCGGCGCCG 991
BSNT_01982___ 992 TGGAATCGATTTTGTCCTATCCGGCAACGATGTCTCATGCGGCAATGCCT 1041
|.|||||.|||.|.||.||.||.|||.|.|||||.|||||.||.|||||.
RBAM_011940__ 992 TCGAATCCATTCTCTCATACCCTGCAGCCATGTCGCATGCCGCCATGCCA 1041
BSNT_01982___ 1042 AAGGAAGAGCGTGAAAAACGCGGTATCACTGATGGCCTGCTCCGTCTGAG 1091
||.|.||||.|.||.||||||||.|||||.||.|||||.||.||..||||
RBAM_011940__ 1042 AAAGCAGAGAGGGAGAAACGCGGCATCACAGACGGCCTTCTGCGCTTGAG 1091
BSNT_01982___ 1092 TGTCGGCGTCGAACATGCAGACGATTTAGAACACGATTTCGAACAAGCGC 1141
.|||||.||||||.|.||.||.||||||||.|..||.||||||||.||..
RBAM_011940__ 1092 CGTCGGAGTCGAAAACGCCGAAGATTTAGAGCGGGACTTCGAACAGGCAT 1141
BSNT_01982___ 1142 TGAAAGAAAT------TGCTCCAGTTGCG-GTTCGTTAA 1173
|||||.|||| .||.|.||| | |.||.|.|
RBAM_011940__ 1142 TGAAAAAAATAACCCCCGCCCAAGT---GAGATCATAA- 1176
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