Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02070 and RBAM_012290
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:46
# Commandline: needle
# -asequence dna-align/BSNT_02070___yjiB.1.9828.seq
# -bsequence dna-align/RBAM_012290___yjiB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02070___yjiB-RBAM_012290___yjiB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02070___yjiB-RBAM_012290___yjiB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02070___yjiB
# 2: RBAM_012290___yjiB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1284
# Identity: 825/1284 (64.3%)
# Similarity: 825/1284 (64.3%)
# Gaps: 159/1284 (12.4%)
# Score: 2500.5
#
#
#=======================================
BSNT_02070___ 1 ATGAATGTGTTAAACCGCCGG---------CAAGCCTTGCAGCGAGCGCT 41
|||.|| ||.|...|| ||||||.|.||..||.|.||
RBAM_012290__ 1 ----ATGAGT--AAGCTGAGGAGCACGAGACAAGCCATCCAAAGAACCCT 44
BSNT_02070___ 42 GCTCAATGGGAAAAACAAACAGGATGCGTAT--CATCCGTTTCCATGGTA 89
|.|.||.||.||||||...|.||| ||||| .|.||.|||||.|||||
RBAM_012290__ 45 GATGAAAGGAAAAAACGGCCTGGA--CGTATACAACCCTTTTCCTTGGTA 92
BSNT_02070___ 90 TGAATCGATGAGAAAGG-ATGCGCCTGTTTCCTTTGATGAAGAAAACCAA 138
||||...||||||..|| |.|| |||.|...||||||||||| ||||.||
RBAM_012290__ 93 TGAAAAAATGAGACGGGAAAGC-CCTATACACTTTGATGAAG-AAACGAA 140
BSNT_02070___ 139 -GTGTGGAGCGTTTTTCTTTATGATGATGTCAAAAAAGTTGTTGGGGATA 187
||.|||||.||.|||.|.||.|||||||||||||||||..|..|.||||
RBAM_012290__ 141 GGTTTGGAGTGTATTTTTATACGATGATGTCAAAAAAGTCATCAGTGATA 190
BSNT_02070___ 188 AAGAGTTGTTTTCCAGTTGCATGCCGCAGCAGACAAGCTCTATTGGAAAT 237
|||||..|||.||.||...||||.|..|...||.||||||.||||.|||.
RBAM_012290__ 191 AAGAGACGTTCTCAAGCCTCATGACTGATGTGAAAAGCTCGATTGCAAAG 240
BSNT_02070___ 238 TCCATCATTAACATGGACCCGCCGAAGCATACAAAAATCCGTTCAGTCGT 287
|||||..|.||.||||||||||||||||||||..|||||.|.||.|.|||
RBAM_012290__ 241 TCCATGCTGAATATGGACCCGCCGAAGCATACCCAAATCAGATCTGCCGT 290
BSNT_02070___ 288 GAACAAAGCCTTTACTCCGCGCGTGATGAAGCAATGGGAACCGAGAATTC 337
.||....||.||.|||||.|||||..|||||.|||||||.|||||||||.
RBAM_012290__ 291 CAATCGCGCTTTCACTCCCCGCGTCTTGAAGGAATGGGAGCCGAGAATTA 340
BSNT_02070___ 338 AAGAAATCACAGATGA---ACTGATTCA-------AAAATGTCAGGGGCG 377
||||.||.||.|||.| .||||..|| ||.| |.|||||
RBAM_012290__ 341 AAGACATTACCGATCATCTCCTGAAACAGGCAAAGAACA----AAGGGCG 386
BSNT_02070___ 378 CAGTGAGTTTGACCTTGTTCACGATTTTTCATACCCGCTTCCGGTTATTG 427
|.||||..|.|||.|.|||.|.||.|||||..|.|||||.||.|
RBAM_012290__ 387 ------GATTGATATCGTTAAAGATCTCTCTTACCCTTTGCCGGTCATGG 430
BSNT_02070___ 428 TGATATCTGAGCTGCTGGGAGTGCCTTCAGCGCATATGGAACAGTTTAAA 477
||||.||.||..|..|.||.||.||.||.|..|.||||||.|||||||||
RBAM_012290__ 431 TGATTTCAGAATTATTAGGCGTTCCGTCCGAACGTATGGATCAGTTTAAA 480
BSNT_02070___ 478 GCATGGTCTGATCTTCTGGTCAGTACACCGAAGGATAAAAGTGAAGAAGC 527
..||||||.||..||||.|||||.|..|||||.|||...|||...|||||
RBAM_012290__ 481 AAATGGTCGGACATTCTCGTCAGCATGCCGAAAGATGCGAGTCCTGAAGC 530
BSNT_02070___ 528 -----TGAAAAAGCCTTTTTGGAAGAACGAGATAAGTGTGAGGAAGAACT 572
.|||||| |..|.|.|||||.||..|.|||||||..||.||
RBAM_012290__ 531 GGCGGAGAAAAA-----TCAGCAGGAACGTGACCAATGTGAGGCGGAGCT 575
BSNT_02070___ 573 GGCCGCGTTTTTTGCCGGCATCATAG-AAGAAAAGCG-AAACAAACCGGA 620
|||.|||||||||||.|..||.|||| |||.||| || |||||..||||
RBAM_012290__ 576 GGCGGCGTTTTTTGCGGAAATAATAGAAAGCAAA-CGAAAACAGCCCGG- 623
BSNT_02070___ 621 ACAGGATATTATTTCTATTTTAGTGGAAGCGGAAGAAACAGGCGAGAAGC 670
.||.||.||||||||||||||..|..|||.|||||||...||.|||||||
RBAM_012290__ 624 CCAAGACATTATTTCTATTTTGATAAAAGAGGAAGAAGAGGGAGAGAAGC 673
BSNT_02070___ 671 TGTCCGGTGAAGAGCTGATTCCGTTTTGCACGCTGCTGCTGGTGGCCGGA 720
|..|.|..|||||.|||||.||||||||||..|||||..|.|||||.|||
RBAM_012290__ 674 TCACGGCAGAAGATCTGATCCCGTTTTGCAACCTGCTTTTAGTGGCGGGA 723
BSNT_02070___ 721 AATGAAACCACTACAAACCTGATTTCAAATGCGATGTACAGCATATTAGA 770
||||||||.||.||.||.||.||||||||||||.|.||||||||||||||
RBAM_012290__ 724 AATGAAACAACGACTAATCTCATTTCAAATGCGGTTTACAGCATATTAGA 773
BSNT_02070___ 771 AACGCCAGGCGTTTACGAGGAACTGCG-CAG--CCATCCTGAACTGATGC 817
.|||||.|||.||||.||.||.|||.| ||| ||.|.|| ||.||..
RBAM_012290__ 774 GACGCCCGGCCTTTATGAAGAGCTGAGACAGGACCCTTCT---CTCATCG 820
BSNT_02070___ 818 CTCAGGCAGTGGAGGAAGCCTTGCGTTTCAGAGCGCCGGCCCCGGTTTTG 867
|.||..|.|||||.|||.|..|||||||..|.||.||.||.|||.||.|.
RBAM_012290__ 821 CGCAAACGGTGGAAGAAACGCTGCGTTTTCGCGCTCCCGCTCCGTTTGTC 870
BSNT_02070___ 868 AGGCGCATTGCCAAG-------CGG---GATACGGA---GATCGGGGGGC 904
|| ||| ||| ||.||.|| |..|||..|.|
RBAM_012290__ 871 AG----------AAGGACGGTCCGGCACGACACTGAACTGCGCGGACGCC 910
BSNT_02070___ 905 ACCTGATTAAAGAAGGTGATATGGTT-TTGGCGTTTGTGGCATCGGCAAA 953
.|.||| |||| .||.||.||.||| |..|| |..||.|||||.||.||
RBAM_012290__ 911 GCTTGA--AAAG-CGGGGAGATCGTTCTCTGC-TACGTTGCATCTGCCAA 956
BSNT_02070___ 954 TCGTGATGAAGCGAAGTTTGACAGGCCGCACATGTTTGATATCCGCCGCC 1003
.|||||||||...||.|||||.|.|.||..|.|.||||||||.|..||||
RBAM_012290__ 957 CCGTGATGAAAACAAATTTGAGAAGGCGGGCGTATTTGATATTCATCGCC 1006
BSNT_02070___ 1004 ATCCCAATCCGCATATTGCGTTTGGCCACGGCATCCATTTTTGCCTTGGG 1053
|..|.||||||||..||.|.||.||...||||.|.||.||.|||.|.||.
RBAM_012290__ 1007 AATCGAATCCGCACCTTTCCTTCGGATTCGGCGTACACTTCTGCTTAGGC 1056
BSNT_02070___ 1054 GCCCCGCTTGCCCGTCTTGAAGCAAATATCGCG-TTAACGTCTTTGATTT 1102
||.|||||||||.|.||||||||..|..||||| |.||.| ||.||
RBAM_012290__ 1057 GCTCCGCTTGCCAGACTTGAAGCGGAAGTCGCGCTGAAAG-----GAATT 1101
BSNT_02070___ 1103 CT----GCTTTTCCTCATATGGAGTGCGTCAGTATCACTCCGATTGA--- 1145
.| ||.|||.|.||..|.|||..||| ||.||||||
RBAM_012290__ 1102 GTAAAAGCCTTTTCACACCTTGAGCCCGT---------TCGGATTGAGCC 1142
BSNT_02070___ 1146 ------AAACAGTGTGATATACGGATTAAAGAGCTTCCGTGT-------- 1181
|||||||||.||.||||| |||...||.|
RBAM_012290__ 1143 GATCCGAAACAGTGTCATGTACGG--------GCTGGAGTCTTTAGAAGC 1184
BSNT_02070___ 1182 ----------GAAAAT-----ATAA--------- 1191
|||||| |.||
RBAM_012290__ 1185 GGAGATAAACGAAAATGAGGGAGAAGAAAAATGA 1218
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