Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02071 and RBAM_012300

See Amino acid alignment / Visit BSNT_02071 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:47
# Commandline: needle
#    -asequence dna-align/BSNT_02071___yjiC.1.9828.seq
#    -bsequence dna-align/RBAM_012300___yjiC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02071___yjiC-RBAM_012300___yjiC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02071___yjiC-RBAM_012300___yjiC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02071___yjiC
# 2: RBAM_012300___yjiC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1284
# Identity:     810/1284 (63.1%)
# Similarity:   810/1284 (63.1%)
# Gaps:         201/1284 (15.7%)
# Score: 2424.5
# 
#
#=======================================

BSNT_02071___      1 ---ATGAAAAAGTACCATATTTCG--ATGATCAATATCCCGGCGTACGGA     45
                        ||||.|||  |.||.|..|||  ||.||.|||.|..|.||..||||.
RBAM_012300__      1 ATGATGAGAAA--AACACACATCGCCATTATTAATGTGGCCGCTCACGGT     48

BSNT_02071___     46 CATGTCAATCCTACGCTTGCTTTAGTAGAGAAGCTTTGTGAGAAA----G     91
                     |||||||||||.|||||..||.|||..|||.|.| ||||   .||    |
RBAM_012300__     49 CATGTCAATCCCACGCTGCCTGTAGCCGAGGAAC-TTGT---CAATCGCG     94

BSNT_02071___     92 GGCACCGTGTCACGTACGCGACGACTGAGGAGTT---TGCGCCCGCTGTT    138
                     ||.|....||.||.|.|||.|||||||||||.||   .||..|||.||  
RBAM_012300__     95 GGTATAAAGTGACATTCGCTACGACTGAGGAATTCGAAGCTTCCGTTG--    142

BSNT_02071___    139 CAGCAAGCCGGTGGAGAAGCATTGCTCTATCATACATCC--TTGAATATT    186
                       .|||..|||            ||.|.||      |||  ||..|||..
RBAM_012300__    143 --CCAAAACGG------------GCGCCAT------TCCCGTTTTATACC    172

BSNT_02071___    187 GATCCTAAGCA-AATCAG--------GGAGATGATGGAAAAG--------    219
                     |  |..||||| ||  ||        |||||.|||  |||||        
RBAM_012300__    173 G--CACAAGCATAA--AGGCGGACCCGGAGACGAT--AAAAGAACGGGTA    216

BSNT_02071___    220 ------AATGACGCGCCCCTCAGCCTTT----------TGAAAGAATCAC    253
                           |||||.|||          |||          ||.|||||.|..
RBAM_012300__    217 AATAAAAATGATGCG----------TTTGTGATGTTTCTGGAAGAAGCGG    256

BSNT_02071___    254 T--CAGCATTCTGCCGCAGCTTGAGGAGTTATATAAGGATGATCAGCCTG    301
                     |  .||  |.||.||||||||.||.|||.|.||.||.||.||.|..||||
RBAM_012300__    257 TTGAAG--TGCTTCCGCAGCTGGAAGAGCTGTACAAAGACGACCTTCCTG    304

BSNT_02071___    302 ATCTGATCATCTATGACTTTGTTGCGCTGGCTGGTAAATTGTTTGCTGAA    351
                     |..|..||.|.|.|||.|||.|.||.||.||.||.|||||||||||.|| 
RBAM_012300__    305 ACATCGTCCTGTTTGATTTTTTAGCTCTTGCCGGAAAATTGTTTGCGGA-    353

BSNT_02071___    352 AAGCTTAATG------TTCCGGTCATTAAGCTCTGTTCGTCATATGCCCA    395
                          |||||      |.||||.|.|.|||.||||..||...||||  ||
RBAM_012300__    354 -----TAATGGCGGCATCCCGGCCGTAAAGTTCTGCCCGAGCTATG--CA    396

BSNT_02071___    396 A--AATGAATCCTTTCAGTTAGGAA---ATGAAGACATGCTGAAAAAAAT    440
                     |  |||||.|..|||||.|||||||   |.|||||.|..|||        
RBAM_012300__    397 ATGAATGAGTATTTTCAATTAGGAAGAGACGAAGAAACACTG--------    438

BSNT_02071___    441 AAGAGAAGC------AGAGGCTGAATTTA-AAGCCTACTTGGAGCAAGA-    482
                         |||||      |.|||| ||   || |||..|||..||||| ||| 
RBAM_012300__    439 ----GAAGCGGCCAAACAGGC-GA---TAGAAGAATACCAGGAGC-AGAT    479

BSNT_02071___    483 -GAAGTTG----------CCGGCTGTTTCATTTGAACAGTTAGCTGTGCC    521
                      |||..||          .|||.||  .||.|.|||.|.||...|.||||
RBAM_012300__    480 TGAAAATGAACAATTGAAACGGATG--ACAATGGAAGAATTTTTTATGCC    527

BSNT_02071___    522 GGAAGCATTAAATATTGTCTTTATGCCGAAGTCTTTTCAGATTCAGCATG    571
                     .|||..|.|.|||||||||||||||||.|.|.|.||||||....|.||.|
RBAM_012300__    528 TGAAAAACTGAATATTGTCTTTATGCCAAGGGCCTTTCAGCCGAAACAGG    577

BSNT_02071___    572 AGACGTTCGATGACCGTTTCTGTTTTGTCGGCCCCTCTCTCGGAGAACGG    621
                     |.||.||.|||||.||.||||||||||..||.||.|||||.|||||||  
RBAM_012300__    578 AAACCTTTGATGAACGATTCTGTTTTGCGGGTCCGTCTCTTGGAGAAC--    625

BSNT_02071___    622 AAGGAGAAA----GAAAGCCTGTTGATTGA--CAAG--GATGATCGCCCG    663
                       |.|.|||    |.|||.|||...|||||  | ||  |||||.||.|||
RBAM_012300__    626 --GCACAAATACGGGAAGTCTGGAAATTGATGC-AGCCGATGACCGTCCG    672

BSNT_02071___    664 CTTATGCTGATTTCTTTGGGTACGGCGTTTAACACATGGCCGGAATTTTA    713
                     ||||||||.||.||..||||.||||||||||||.|.|||||.||||||||
RBAM_012300__    673 CTTATGCTCATCTCACTGGGAACGGCGTTTAACGCCTGGCCTGAATTTTA    722

BSNT_02071___    714 CAAGATGTGCATCAAGGCATTTCGGGATTCTTCATGGCAAGTAATCATGT    763
                     |.|||||||.||..|.||.||||||||.||....||||..||.||.||||
RBAM_012300__    723 CCAGATGTGTATTGACGCGTTTCGGGACTCGGACTGGCGGGTTATTATGT    772

BSNT_02071___    764 CGGTTGGGAAAACGATTGATCCAGAAAGCTTGGAGGATATTCCTGCTAAC    813
                     |.||.||.|.|||.||||||||.|||||.||...||||.|.||.|.|.||
RBAM_012300__    773 CAGTCGGCACAACAATTGATCCGGAAAGTTTTTCGGATGTCCCCGATCAC    822

BSNT_02071___    814 TTTACCATTCGCCAAAGTGTGCCTCAGCTTGAGGTGTTAGAGAAAGCTGA    863
                     ||||.|||.|||||....||.|||||||||||.|||.|.||||||||..|
RBAM_012300__    823 TTTATCATCCGCCAGCACGTTCCTCAGCTTGATGTGCTGGAGAAAGCAAA    872

BSNT_02071___    864 TTTGTTCATCTCTCATGGCGGGATGAACAGTACGATGGAAGCGATGAACG    913
                     ..|||||.|.|||||.|||||||||||||||||.|||||.||||||||.|
RBAM_012300__    873 GCTGTTCGTATCTCACGGCGGGATGAACAGTACAATGGAGGCGATGAATG    922

BSNT_02071___    914 CAGGTGTGCCGCTTGTCGTCATTCCGCAAATGTATGAGCAAGAGCTCACT    963
                     |.|||||.|||||.||.|||.|||||||||||.|.||.||||||.|.||.
RBAM_012300__    923 CGGGTGTCCCGCTCGTTGTCGTTCCGCAAATGCACGAACAAGAGGTTACC    972

BSNT_02071___    964 GCAAATCGGGTTGATGAATTAGGCCTTGGCGTTTATTT---GCCGAAAGA   1010
                     |||||.||.||.||||||||.||.||||||||..||.|   |||||||  
RBAM_012300__    973 GCAAAGCGTGTGGATGAATTGGGGCTTGGCGTGCATCTGCCGCCGAAA--   1020

BSNT_02071___   1011 GGAAGTGACTGTTTCCAGCCTGCAGGAAGCGGTTCAGGCTGTATCCAGTG   1060
                      |||||.|||||..||.|..||||..|||..||||||...||||.|.|.|
RBAM_012300__   1021 -GAAGTCACTGTGGCCCGTTTGCAAAAAGATGTTCAGAACGTATACGGCG   1069

BSNT_02071___   1061 ATCAAGAGCTGCTCAGCCGCGTCAAGAATATGCAAAAGGATGTAAAAGAA   1110
                     ||.||.|..|.|||||||||||.||.|..|||||..||.|..||.|||||
RBAM_012300__   1070 ATAAAAACATCCTCAGCCGCGTGAAAAGCATGCAGCAGAAAATAGAAGAA   1119

BSNT_02071___   1111 GCTGGCGG-----AGCGGAGC-----GTGCGGCAGCTGAGATTGAAGCGT   1150
                     .|.|||||     |.|.| ||     ||||         .|||||||..|
RBAM_012300__   1120 ACCGGCGGCCCCAAACAG-GCTGTTTGTGC---------CATTGAAGAAT   1159

BSNT_02071___   1151 TTATGAAAAAATCCGCTGTCCCGCAGTAA-----   1179
                     ||.|||||||..|.||.|||     |.||     
RBAM_012300__   1160 TTTTGAAAAAGGCGGCCGTC-----GAAAATTGA   1188


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