Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02088 and RBAM_012390

See Amino acid alignment / Visit BSNT_02088 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_02088___yjmB.1.9828.seq
#    -bsequence dna-align/RBAM_012390___yjmB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02088___yjmB-RBAM_012390___yjmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02088___yjmB-RBAM_012390___yjmB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02088___yjmB
# 2: RBAM_012390___yjmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1438
# Identity:    1013/1438 (70.4%)
# Similarity:  1013/1438 (70.4%)
# Gaps:         110/1438 ( 7.6%)
# Score: 3427.5
# 
#
#=======================================

BSNT_02088___      1 ATGCGAACTGAACTGGCAAATAAGGTTGTGTCGGTCGAAA----------     40
                     |||               |.|||   ||||.|.||||..|          
RBAM_012390__      1 ATG---------------AGTAA---TGTGCCTGTCGTGACAGCACCTGC     32

BSNT_02088___     41 CGGAAAA---AAGGCTTTCAT----------TGAAAGAGAAAATGTCCTA     77
                     ||.||||   ||||  ..|||          |||||||.|||.|.||.||
RBAM_012390__     33 CGCAAAAGTGAAGG--AGCATAAGCTGAGTCTGAAAGAAAAAGTATCTTA     80

BSNT_02088___     78 TGGCTTTGGTGATTTTGGCAACGGTTTTATGTTTGATCTCGGCCAGATTT    127
                     |||.|||||.||||||||.|||||.|||||||||||||||||.|||||.|
RBAM_012390__     81 TGGTTTTGGAGATTTTGGGAACGGATTTATGTTTGATCTCGGGCAGATCT    130

BSNT_02088___    128 ATTTATTGAAGTATTTCACTGATGTAGCGGGAATCCCCGCTGCGATGGCC    177
                     ||||..||||||.||||||.|||||.||.||.||.||.||.|||.|.|||
RBAM_012390__    131 ATTTGCTGAAGTTTTTCACAGATGTCGCAGGCATTCCGGCAGCGTTCGCC    180

BSNT_02088___    178 GGCGGCATTTTTTTAGTCAGTAAGCTGTTTGCAGCGATAACAGATCCAAT    227
                     |||.|.||||||||.|||||.|||||||||||.||..|.||.|||||.||
RBAM_012390__    181 GGCAGTATTTTTTTGGTCAGCAAGCTGTTTGCGGCTGTGACTGATCCGAT    230

BSNT_02088___    228 TGTCGGCTCATCAATCGATTATCGCAAAAACATCGGCAAACGGGGGAAAT    277
                     |||||||||..|.||.||.||..|.|||||.||||||...||||||||||
RBAM_012390__    231 TGTCGGCTCGGCCATTGACTACAGAAAAAAGATCGGCCCCCGGGGGAAAT    280

BSNT_02088___    278 TCAGGCCTTATCTATTAATCGGCAGCATCGTGCTTGCGGTGCTTACTGTT    327
                     |||||||.||..|||||.||||.||.||..|.||||||||..|.||.||.
RBAM_012390__    281 TCAGGCCGTACTTATTATTCGGAAGTATTATTCTTGCGGTCATGACCGTA    330

BSNT_02088___    328 CTTATTTTTCTGTCTCCCAATGTATCAACG--ACCGGAAAACTGATATAT    375
                     .|.||||||.||||.||..|.|  |.|.||  |||.|.||.||..|.||.
RBAM_012390__    331 TTGATTTTTGTGTCACCGGACG--TGAGCGTCACCTGGAAGCTTGTGTAC    378

BSNT_02088___    376 GCATATGCATCCTATATGATTTGGGGCATCGGCTATTCGTTTGTGAATAT    425
                     ||.|||||.||.||.|||.|.|||||..|||..|||||.||.||.|||||
RBAM_012390__    379 GCCTATGCTTCTTACATGCTGTGGGGGGTCGCTTATTCTTTCGTCAATAT    428

BSNT_02088___    426 TCCGTACGGCTCATTAGGGGCAGCGATGACTCAAAATTCTGAGGACCGGA    475
                     ||||||||||||..|.||.||.||.||.||.||..||.|.||||||.|.|
RBAM_012390__    429 TCCGTACGGCTCCCTCGGCGCGGCCATTACACAGGATGCGGAGGACAGAA    478

BSNT_02088___    476 CCTCCATTTCGACGTTCCGCCAAATCGGATCACTTGGCGCCTTGTTTATC    525
                     |..|..||||..|.||||||||.|||||.||.||.|||||..||.|.||.
RBAM_012390__    479 CGGCGCTTTCCGCATTCCGCCAGATCGGCTCCCTCGGCGCGCTGCTCATT    528

BSNT_02088___    526 ACAAGTGTGGCCGTGATGCCGCTGCTCGTCAAGTTTGATAA---TCCGAA    572
                     ||||||||...|||.||.|||.|.||.||..|.||||||||   ||   |
RBAM_012390__    529 ACAAGTGTCATCGTCATCCCGATTCTTGTTCATTTTGATAACGTTC---A    575

BSNT_02088___    573 GGTCGGCTACCCGGTGGTCATGGGCTTGTTCGCCGCGCTCGG---TGTGT    619
                     ..||||||||||||..||||||||..||.|.||||...||||   .|.| 
RBAM_012390__    576 CATCGGCTACCCGGCAGTCATGGGAATGATGGCCGTAATCGGAATCGCG-    624

BSNT_02088___    620 TTTGGTTTTAT-ATTTGCTACCGCAACTGCAAAGAGCGCATTGTCATATC    668
                        ||.||||| ||.||||||||.|||||||||||..|.||     ||||
RBAM_012390__    625 ---GGATTTATGATCTGCTACCGAAACTGCAAAGAAAGAAT-----TATC    666

BSNT_02088___    669 G-----GAAGCACCCAAAGAAAAATTAACACTCT-CATC-TGTCG----T    707
                     |     |||||.||.||||||||      .||.| |.|| |||||    |
RBAM_012390__    667 GTCCGTGAAGCGCCGAAAGAAAA------GCTGTCCGTCATGTCGGTTTT    710

BSNT_02088___    708 CAAAACATTTATTACAAATAAACCGCTGTTAACCCTTGTCCTGATGACGA    757
                     ||||...|||||....||.||||||||..|.|||.|.||..|.|||||||
RBAM_012390__    711 CAAATGCTTTATCGGCAACAAACCGCTTCTGACCGTCGTTTTCATGACGA    760

BSNT_02088___    758 TTTTTTCAATTTCCGCATACAACATTAAATCCGCCATGCTCGTCTATTTC    807
                     ||||.|||||.||.|||||.||||||||||||||.|||||.||.||.|||
RBAM_012390__    761 TTTTCTCAATATCGGCATATAACATTAAATCCGCTATGCTTGTTTACTTC    810

BSNT_02088___    808 GCACAATATAACTTGGGCAATGTTGAATTAATGGCTTATATGAACTTCAT    857
                     ||.||.||.||..|...|||||..||..|.|||.|.||.||||..||.||
RBAM_012390__    811 GCCCAGTACAATCTCAACAATGCGGAGCTGATGTCCTACATGAGTTTTAT    860

BSNT_02088___    858 CATTATTGGTTCTTCCTTTTTGGGCGTCGTATTCCTACCAAAGCTCGTCA    907
                     |||.||.||||||||.|||||.||.||..|.||..|.||.||.|||||||
RBAM_012390__    861 CATCATCGGTTCTTCATTTTTAGGTGTTTTGTTTATGCCGAAACTCGTCA    910

BSNT_02088___    908 AGATGTTT-GGAAAGAAACGAACGGCAATGATCGGCTTCGGCATCAGTGT    956
                     | |.|||| |||||.||.|.|||||..||||||||.||.|.|.||||   
RBAM_012390__    911 A-ACGTTTCGGAAAAAAGCAAACGGTGATGATCGGTTTTGCCGTCAG---    956

BSNT_02088___    957 GGCCGCGGATCTGA-----TCAACTTTATG-CTTCCATCTAACGTTTATG   1000
                     .|||||||  ||||     |.|| |||.|| ||.||.||.||.||.|||.
RBAM_012390__    957 CGCCGCGG--CTGATGCGCTGAA-TTTCTGTCTGCCGTCAAATGTATATA   1003

BSNT_02088___   1001 TGTTTACAATTCTCGCCAGTATCGCCTTTATCGGAATCAGTATCCCAAAT   1050
                     |.|||||.....|.||.||.||.||.||||||||.|||||.||.|||||.
RBAM_012390__   1004 TCTTTACGGCGTTAGCGAGCATTGCTTTTATCGGGATCAGCATACCAAAC   1053

BSNT_02088___   1051 GGCATCACGTGGGCTCTTGTCTCCGATATTATCGACTATGGCGAATGGAA   1100
                     |||||.||||||||.|||||.||.||.|||||.||.||.||.||||||||
RBAM_012390__   1054 GGCATTACGTGGGCGCTTGTGTCGGACATTATTGATTACGGGGAATGGAA   1103

BSNT_02088___   1101 ATCCGGTGAACGGAAGGAAGCAACGACATATTCACTTTTCAATTTCTCAA   1150
                     ..|.||||||||||||||.||.|||||||||||.||||||||.|||||.|
RBAM_012390__   1104 GACGGGTGAACGGAAGGAGGCGACGACATATTCGCTTTTCAACTTCTCCA   1153

BSNT_02088___   1151 GAAAGCTTGCTCAATCTTTGTCTGGCTTTCTCTCGGGGATCGGTTTGGGG   1200
                     ||||.||.||.||||||||.||.||.|||||.||.||.|||||..||.|.
RBAM_012390__   1154 GAAAACTCGCCCAATCTTTATCAGGTTTTCTTTCAGGCATCGGGCTGAGC   1203

BSNT_02088___   1201 ATTATCGGCTATGTGCCGAATGCAGTC-CAGACAGCACAGG--CGCTGAT   1247
                     .||||.||||||.|.||||||||| || ||||||  |.|||  |||||||
RBAM_012390__   1204 GTTATTGGCTATATCCCGAATGCA-TCTCAGACA--AAAGGCACGCTGAT   1250

BSNT_02088___   1248 TGGCATCAAAGCGCTGCTTCTTCTGTATCCGGCCATTGCTTTGGCATTAG   1297
                     .||.||.||||.|||.||.||.|||||.|||||..|.|||||.||.|..|
RBAM_012390__   1251 CGGGATTAAAGGGCTTCTGCTGCTGTACCCGGCTTTCGCTTTAGCGTGCG   1300

BSNT_02088___   1298 CGATGTTCATTATCGGCTTTCTTTATAAACTCACAGACCAGCAGCATGCT   1347
                     |.|||.|.||||||||.||..|.||||||||.||.||||.|||||||||.
RBAM_012390__   1301 CCATGCTGATTATCGGTTTAATGTATAAACTGACGGACCGGCAGCATGCC   1350

BSNT_02088___   1348 CAGATCGTTCAGGATCTT-CATCA---AAAGAGCTGA-   1380
                     .||.|||||||||| ||| |||||   ||| |.||.| 
RBAM_012390__   1351 GAGCTCGTTCAGGA-CTTACATCATGCAAA-ACCTTAA   1386


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