Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_02097 and RBAM_012400

See Amino acid alignment / Visit BSNT_02097 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_02097___exuR.1.9828.seq
#    -bsequence dna-align/RBAM_012400___exuR.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02097___exuR-RBAM_012400___exuR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02097___exuR-RBAM_012400___exuR.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02097___exuR
# 2: RBAM_012400___exuR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1025
# Identity:     772/1025 (75.3%)
# Similarity:   772/1025 (75.3%)
# Gaps:          49/1025 ( 4.8%)
# Score: 2902.0
# 
#
#=======================================

BSNT_02097___      1 ATGGTAACCATAAAAGATATCGCAAAACTCGCAAACGTATCCCACACAAC     50
                     ||||||||||||||||||||||||||||||||.|||||||||||||||||
RBAM_012400__      1 ATGGTAACCATAAAAGATATCGCAAAACTCGCCAACGTATCCCACACAAC     50

BSNT_02097___     51 CGTTTCCAGAGCACTCAACAACAGCCCTTACATCAAAGAACATACGAAGA    100
                     |||.|||.|.|||||.|||..||||||.|||||.|||||.|||||.||..
RBAM_012400__     51 CGTATCCCGGGCACTTAACGGCAGCCCCTACATTAAAGAGCATACAAAAC    100

BSNT_02097___    101 AAAAGATATTAGAGCTAGCAGAGCAGCTCAACTATACACCAAATGTAAAT    150
                     |.||.|||||||||||.||....|||||.||.||.|||||.|||||||||
RBAM_012400__    101 AGAAAATATTAGAGCTCGCTTCCCAGCTGAATTACACACCGAATGTAAAT    150

BSNT_02097___    151 GCGAAAAGTCTGGCGATGCAAAAGTCGCATACGATCGGGCTATTCTTTAC    200
                     ||.|||||.||.||.|||||||||||.|||||||||||.||.||.|||||
RBAM_012400__    151 GCAAAAAGCCTTGCCATGCAAAAGTCCCATACGATCGGACTGTTTTTTAC    200

BSNT_02097___    201 AAGCATTACAAACGGAACCTCACACAGCTTCTTTGCAGACACAATCAAAG    250
                     ||||||.|||||||||||||||||||||||.|||.|.||.||.|||||||
RBAM_012400__    201 AAGCATCACAAACGGAACCTCACACAGCTTTTTTTCCGATACCATCAAAG    250

BSNT_02097___    251 GCGTCAATCAAGCCATAAGTGAGGATTACAATCTGTATGTGCGCGGCATT    300
                     |.||.||.|...|.||.||||||||.||||||.|||..||.||||..|||
RBAM_012400__    251 GTGTAAACCGCACAATCAGTGAGGAATACAATTTGTTCGTCCGCGCGATT    300

BSNT_02097___    301 GATGATCTGAAAAACTATGACTCCGTTACACCGATGAGATATGACGGCAT    350
                     ||.||.|||||||.||.|||..||.||||.||.|||||||||||.||.||
RBAM_012400__    301 GACGACCTGAAAAGCTTTGAAACCATTACGCCCATGAGATATGATGGAAT    350

BSNT_02097___    351 CATTTTAATGAGCCAAAGTGACATTGATAATTCTTTTATTTACCATATTC    400
                     ||||||||||||||||||.||||.|||||||||.||||||||.|||||.|
RBAM_012400__    351 CATTTTAATGAGCCAAAGCGACAGTGATAATTCATTTATTTATCATATCC    400

BSNT_02097___    401 GCGAAAAAAACATTCCGCTTGTCGTGCTGAATCGTGATATTGATGATCGC    450
                     ||||.||||||||.|||||||||||||||||.||.||.||||||||.||.
RBAM_012400__    401 GCGAGAAAAACATCCCGCTTGTCGTGCTGAACCGGGACATTGATGACCGG    450

BSNT_02097___    451 ACCATCACGAATATTTTGTCCAATGACAAGGAAGGCTCTCA-AGAAGCTG    499
                     |.||||||||||||..||||.||.||.||.||.||||| || |.|.||.|
RBAM_012400__    451 AGCATCACGAATATCCTGTCAAACGATAAAGAGGGCTC-CAGACAGGCGG    499

BSNT_02097___    500 TAGAATACTTCATTCAGTC-----CGGCCATCA-AGACATCGCCATCATC    543
                     |.||.|.|.|.|     ||     |||.|| || |||.|||||.|||||.
RBAM_012400__    500 TCGACTGCCTGA-----TCGCAAACGGACA-CAGAGATATCGCGATCATT    543

BSNT_02097___    544 GAGGGGATCGAAGGCTTTAAATC--CTCCCAGCAGCGAAAGGAAGGCTAC    591
                     |||||.|..|||||.||.|..||  ||.|  .|||||.||.||||||||.
RBAM_012400__    544 GAGGGAAAGGAAGGATTCAGGTCAACTTC--TCAGCGGAAAGAAGGCTAT    591

BSNT_02097___    592 TT---ATCTGCACTGATTCAACATCATATTCCGATCAAGCATGAATACAG    638
                     ||   ||||   .|.|||.|.|||..|||.|||||.||||||||||||||
RBAM_012400__    592 TTGACATCT---TTAATTGATCATTCTATCCCGATTAAGCATGAATACAG    638

BSNT_02097___    639 TGTCAAAGGACAGTACGATATGGAAAGCGGCTTTCAAGCGATGGAGAGGC    688
                     |||.|||||.|..||.|||||||||||||||..|||.||||||||.|..|
RBAM_012400__    639 TGTAAAAGGCCGCTATGATATGGAAAGCGGCAGTCAGGCGATGGAAAAAC    688

BSNT_02097___    689 TGCTGGCACTGCCGAAT--CCTCCAACCGCTGTTTTTTGTTCGAATGATG    736
                     |..||||.||.|  |||  ||.||.||.||||||||||||||.||.||||
RBAM_012400__    689 TCTTGGCGCTTC--AATCACCGCCTACGGCTGTTTTTTGTTCAAACGATG    736

BSNT_02097___    737 ACATGGCAATCGGAGCGATGAATGCGATATTCGCAAAGGGCCTGCGCGTT    786
                     |.|||||.|||||.||||||||.||.||.|||||.||.||||||..||||
RBAM_012400__    737 ATATGGCGATCGGGGCGATGAACGCCATTTTCGCCAAAGGCCTGAACGTT    786

BSNT_02097___    787 CCTGATGATATTTCGGTGATCGGGTTTGATGATATTGGGTTTTCACAGTA    836
                     ||.||.|||||.||.||.||||||||||||||.||.||..||||.||.||
RBAM_012400__    787 CCGGAAGATATATCCGTTATCGGGTTTGATGACATCGGCATTTCCCAATA    836

BSNT_02097___    837 CATCACGCCAAGACTTACAACAGTAAAGCGCCCAGTGGAGAAAATCAGCG    886
                     |||.|||||.||.|||.|.||||||||.|||||.||.||.||.||||||.
RBAM_012400__    837 CATGACGCCGAGGCTTTCGACAGTAAAACGCCCGGTTGAAAACATCAGCA    886

BSNT_02097___    887 TGCTCGGTGCGCAAAAACTCTTGTCTCTGATCAGCGAGCCCGAAACAAAA    936
                     |.|||||.||..|.|||.|.|||.|.||.|||..|||.||.||.||....
RBAM_012400__    887 TACTCGGCGCAGAGAAAATTTTGGCGCTAATCGCCGACCCGGATACGGCG    936

BSNT_02097___    937 GCAGAAAAAATCTTGGAAAACACAAAATTCATGGTGCGTGATTC------    980
                     ||.||||||||.|..||||||||..|..|.|||.|..|.|||||      
RBAM_012400__    937 GCGGAAAAAATATACGAAAACACCGAGGTGATGATAAGAGATTCCATTAA    986

BSNT_02097___    981 ---AGTCAGACGATTGACGACGTGA   1002
                        |.|||.|..|            
RBAM_012400__    987 AAAACTCACATAA------------    999


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.