Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02098 and RBAM_012410

See Amino acid alignment / Visit BSNT_02098 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:48
# Commandline: needle
#    -asequence dna-align/BSNT_02098___uxaB.1.9828.seq
#    -bsequence dna-align/RBAM_012410___uxaB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02098___uxaB-RBAM_012410___uxaB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02098___uxaB-RBAM_012410___uxaB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02098___uxaB
# 2: RBAM_012410___uxaB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1502
# Identity:    1020/1502 (67.9%)
# Similarity:  1020/1502 (67.9%)
# Gaps:         115/1502 ( 7.7%)
# Score: 3175.5
# 
#
#=======================================

BSNT_02098___      1 ATGCAGAAACTGAATAAAAATGTGTACGATCACTATACTCGGTATCCAGA     50
                     .|||.|||.|||||||||||..|||.||.|.|.||.|.||..|||||.||
RBAM_012410__      1 TTGCGGAAGCTGAATAAAAAGATGTGCGGTGAATACATTCAATATCCTGA     50

BSNT_02098___     51 AAAAATTCTCCAATTCGGAGAAGGAAACTTTCTTCGGGGATTTGTTGATT    100
                     ||||.|.||.||.|||||.|||||.||||||.|.||||..||.|..||.|
RBAM_012410__     51 AAAAGTCCTTCAGTTCGGCGAAGGCAACTTTTTGCGGGCCTTCGCAGACT    100

BSNT_02098___    101 GGCAGATTGATCAATTGAATCAACACACTGATTTTAATGGGAGCGTGGCA    150
                     |||||||.||||||||||||||||..||.||||||||.||.|||||.|..
RBAM_012410__    101 GGCAGATCGATCAATTGAATCAACTGACGGATTTTAACGGAAGCGTTGTC    150

BSNT_02098___    151 GTTGTCCAGCCAAGAGGCTCAGAAAAAATCAAACGATTAAATCAGCAAGA    200
                     |..||.|||||.||||||||.||.|||||||||||.|||||..|.||.||
RBAM_012410__    151 GCCGTACAGCCGAGAGGCTCTGAGAAAATCAAACGTTTAAACGAACAGGA    200

BSNT_02098___    201 TGGATTATATACGCTTTTTTTACAAGGAATGAAAGACGGAGAAGCCG--T    248
                     .||.||||.||||||||||||.||.||.||.||.||.||| ||.|||  |
RBAM_012410__    201 CGGTTTATTTACGCTTTTTTTGCAGGGGATAAAGGATGGA-AAACCGGCT    249

BSNT_02098___    249 AAACGAGCATATGATTATCAACTCAATCAGCCGGGGAATTGACCTGTTTT    298
                     .|| ||.||.|.|||..||||.||.||||||||.||.|||||.||.||||
RBAM_012410__    250 GAA-GAACACACGATCGTCAAATCCATCAGCCGCGGCATTGATCTTTTTT    298

BSNT_02098___    299 CTGATTATGAAGCATACAAAGAATTGGCATCAAGCGAAAG--GCTTCGGT    346
                     ||||.|||||..|.|..|||....|||||.||  |.|.||  ||||||.|
RBAM_012410__    299 CTGACTATGATTCCTTTAAACGGCTGGCAGCA--CAAGAGGAGCTTCGTT    346

BSNT_02098___    347 TTATTATCTCCAACACCACTGAGGCTGGGATT---GTATGTGATGAAAAA    393
                     ||||.||.|||||.||.||.||.|| ||||.|   ||.||.||  ||...
RBAM_012410__    347 TTATCATTTCCAATACGACAGAAGC-GGGAATCACGTTTGAGA--AAGGC    393

BSNT_02098___    394 GATCGTTTAGAGGATAGGCCGCAAAAAACATTCCCTGGGAAATTAACTGC    443
                     ||.||..|.||||||||.||.||||||||||||||.|||||||||.|.||
RBAM_012410__    394 GACCGGCTTGAGGATAGACCTCAAAAAACATTCCCCGGGAAATTAGCGGC    443

BSNT_02098___    444 ATTTCTCTACTTCCGCTTTCAGGCTTTTAAAGGAGA-TCAGACAAAAGGG    492
                     .||.||.||.|||||||.|.||||.|||...||.|| .|.|| .||||||
RBAM_012410__    444 GTTCCTTTATTTCCGCTATAAGGCATTTGCGGGTGACGCCGA-GAAAGGG    492

BSNT_02098___    493 TGTGTCCTAATCCCATGTGAACTGATTG-AGAACAACGG-CGAAAAGCTG    540
                     ||..|..|..|.||||||||||||.|.| |||| ||||| ||.||| |||
RBAM_012410__    493 TGCATTATGCTTCCATGTGAACTGGTCGAAGAA-AACGGACGGAAA-CTG    540

BSNT_02098___    541 AAGGAAACGGTTCTTCATTATGCAGGTCTGTGGAAGCTGGAGGAAGGATT    590
                     ||||...|.||.|||||.|||||.||.||||||.|||||||....|..||
RBAM_012410__    541 AAGGCGGCCGTGCTTCAATATGCCGGGCTGTGGGAGCTGGAACCTGATTT    590

BSNT_02098___    591 TACACAGTGGATTCATGAGGCCAATACATTTTGTAATAGTTTAGTAGACC    640
                     |||.||.|||||||||||.||.||.|..||.||.||||...|.||.||.|
RBAM_012410__    591 TACTCAATGGATTCATGACGCGAACATCTTCTGCAATACCCTCGTGGATC    640

BSNT_02098___    641 GGATTGTTCCGGGTTTTCCCGTCGACAGCATTGATGAGATCACGGCGGA-    689
                     |.||||||||.||.|||||.|         |||||      ||.||||| 
RBAM_012410__    641 GTATTGTTCCCGGATTTCCTG---------TTGAT------ACCGCGGAA    675

BSNT_02098___    690 --------------TCTTGGCTATCAGGATGATTTGATAGTTGTGGGAGA    725
                                   |||.||.||..|.||...|.||.|.||.||.||.||
RBAM_012410__    676 GAACTTACCGATTTTCTCGGATACGAAGACCGTCTGCTTGTGGTTGGTGA    725

BSNT_02098___    726 GCAATATTATTTATGGGTTATCGAGGGGCCTGATTGGATTGGAAAAGAAC    775
                     |||.||||||||.|||||.||.||.|||||.||...|.||...||.||.|
RBAM_012410__    726 GCATTATTATTTGTGGGTGATAGAAGGGCCGGAACAGCTTCAGAATGAGC    775

BSNT_02098___    776 TTCCCTTTGCGGCTGCAGGGCTCCATACAAAGAT--CGTCAGCGACCTCA    823
                     ||||.|||||.|..||.|||||..|..||..|||  ||||  .|||||.|
RBAM_012410__    776 TTCCTTTTGCTGAGGCCGGGCTGAACGCACTGATCACGTC--TGACCTTA    823

BSNT_02098___    824 CCCCATACCGGACTAAAAAAGTAAGGATTTTAAATGGCGCTCATACAGCA    873
                     |..|.|||.||||.|||||.||.||.||.|||||.||||||||.||.|||
RBAM_012410__    824 CGTCTTACAGGACAAAAAAGGTGAGAATCTTAAACGGCGCTCACACGGCA    873

BSNT_02098___    874 ATGACGCCAGTGGCTTTATTATACGGCTTAAAAACTGTTAGGGATGCTGT    923
                     .||.||||||||||||||.|||||||..|..||||.||..||||.||.|.
RBAM_012410__    874 TTGGCGCCAGTGGCTTTACTATACGGACTGCAAACCGTCCGGGAAGCGGC    923

BSNT_02098___    924 CGAGCATCCGGAAGTT---GGGC-GATTTATAAGAGAGCTGATTGACGAC    969
                     .|||||  ||  ||.|   |||| ||||.||...|||||||||..|.||.
RBAM_012410__    924 TGAGCA--CG--AGGTGACGGGCAGATTCATCGAAGAGCTGATCAATGAA    969

BSNT_02098___    970 GAAATTCTTCCTGTTTTAAAAATGGAAGGTCTTTCTCAGTATGCTGACGA   1019
                     |||||.||.|||||..|..|||||||.|||.|..|.||.||.||.|..||
RBAM_012410__    970 GAAATCCTCCCTGTGCTGCAAATGGAGGGTGTCACCCAATACGCGGCAGA   1019

BSNT_02098___   1020 TGTGCTGAACCGTTTTAAAAACCCGTATATTAAGCATTACCTGGAAAGCA   1069
                     ||||.|..|.||.|||||||||||.|||||..|.|||||.|||.||||||
RBAM_012410__   1020 TGTGTTACAGCGGTTTAAAAACCCTTATATCCAACATTATCTGCAAAGCA   1069

BSNT_02098___   1070 TTGCATTGAGCTCCGTTTCCAAATTCAAAACGAGAAACCTGCCGACTCTT   1119
                     ||.|..|.|.|.|||...|.|||||||||||.|||||.||||||||.||.
RBAM_012410__   1070 TTACCCTTAACGCCGCCGCGAAATTCAAAACAAGAAATCTGCCGACGCTG   1119

BSNT_02098___   1120 AAGGAATATGCTGAACAAAAGGGACAGCTTCCTGA-ACGCTTGGTGTTTT   1168
                     ||||..|||...|||||..||||.|.|||.||||| |.|| ||||.||||
RBAM_012410__   1120 AAGGCTTATATCGAACAGGAGGGCCGGCTACCTGAGAAGC-TGGTATTTT   1168

BSNT_02098___   1169 CTTTCAGCGCTCTTCTGTATTTTTATCATAAT--AATGAGACATTGCA--   1214
                     |.||||||||..|..|.|||     |||||.|  ||.| |||....||  
RBAM_012410__   1169 CGTTCAGCGCCATGATCTAT-----TCATACTGGAACG-GACCGAACAAA   1212

BSNT_02098___   1215 --GGATGATCCGGC-----AGTGCTTCAA--TTTTTCAAA----GAGGT-   1250
                       ||.|||  ||||     .||.||| ||  .||||||||    |.||| 
RBAM_012410__   1213 CCGGCTGA--CGGCGAGGGGGTTCTT-AACCGTTTTCAAATGGCGCGGTC   1259

BSNT_02098___   1251 ---TTGGTGTCAGGAGGATGACGACATGCTTC-----GGATTGCATCAAG   1292
                        |||    ||     |.||.||.|||.|||     |.||  |.||.| 
RBAM_012410__   1260 CCGTTG----CA-----AAGATGATATGTTTCAAGCGGCAT--CTTCTA-   1297

BSNT_02098___   1293 AGTGTTAGGCGAACAGCGGCTGTGGGGGGCAG-ATCTCAATGAGATACCG   1341
                       |.|||||.|||.||||.|||| |||||.|| |.||.|||.|..|.|||
RBAM_012410__   1298 --TATTAGGAGAAGAGCGACTGT-GGGGGAAGAACCTGAATCATCTTCCG   1344

BSNT_02098___   1342 AAGCTGACTGATAGAGTCGCTGTTTACTTGAATCTTATTCATGAGCTGGG   1391
                     ..|||||||||..||...|||.|||...||..|.|.||||||.|||.|||
RBAM_012410__   1345 GGGCTGACTGAACGAACGGCTTTTTTTCTGTCTGTCATTCATAAGCGGGG   1394

BSNT_02098___   1392 CATGCAGCGGGCTCTTGAACAATACTGCATACAAGAGGGAGAGGTACGTT   1441
                     .|||.|||..||..|..|..|||.||||....||.||||.||.|||...|
RBAM_012410__   1395 TATGAAGCATGCGTTACATGAATGCTGCGGCAAAAAGGGGGAAGTAAAAT   1444

BSNT_02098___   1442 GA   1443
                     ||
RBAM_012410__   1445 GA   1446


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