Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02164 and RBAM_012630

See Amino acid alignment / Visit BSNT_02164 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:50
# Commandline: needle
#    -asequence dna-align/BSNT_02164___xepA.1.9828.seq
#    -bsequence dna-align/RBAM_012630___xepA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02164___xepA-RBAM_012630___xepA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02164___xepA-RBAM_012630___xepA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02164___xepA
# 2: RBAM_012630___xepA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 864
# Identity:     527/864 (61.0%)
# Similarity:   527/864 (61.0%)
# Gaps:         126/864 (14.6%)
# Score: 1538.0
# 
#
#=======================================

BSNT_02164___      1 ATGGTGAAGTATCAATATGAATTTCCTCTCGAT-AGGAC-TGGAAAAGCT     48
                     |||...|||.||..||.|||||||||..||||| |  || |||.|.|.|.
RBAM_012630__      1 ATGAAAAAGCATTCATTTGAATTTCCCGTCGATCA--ACTTGGCAGACCC     48

BSNT_02164___     49 GGCGCTGTAAAGCCCTATCGAGGAGGAAAAAATGATTTTGTGACACCTGT     98
                     |||||.|||||..|.|||||.||....|||||.||||.|||.||||||||
RBAM_012630__     49 GGCGCCGTAAAAGCTTATCGCGGTAACAAAAACGATTATGTCACACCTGT     98

BSNT_02164___     99 TTCGAATTTGTCAGGCGTAGCGGAGATTTTAACAAATGCTTCCTTAAAGG    148
                     |.|..|||||||.||..|.||.|||.||.|.||.|||.|..|..||.|.|
RBAM_012630__     99 TGCTGATTTGTCCGGAATGGCAGAGCTTCTTACCAATACGCCGCTAGAAG    148

BSNT_02164___    149 CGACTGAGGCATATAGTCAACTCGGGCAGGACAGGCTTGGCGCAGTTCTG    198
                     |||..||.|.|||.||.|||.||||.||..||.|..|.||.||.||..|.
RBAM_012630__    149 CGATAGAAGTATACAGCCAATTCGGACAACACCGTTTAGGAGCCGTCTTT    198

BSNT_02164___    199 ATTTCGAAAGTGAAGGGCTGGGCGTATGCAGATCGTGAAGGTACGCTCTT    248
                     ||....|.|||..||||.|||||.|||.|.||.||....||.||.||.||
RBAM_012630__    199 ATAGACAGAGTACAGGGGTGGGCTTATTCGGACCGCAGCGGAACTCTTTT    248

BSNT_02164___    249 TATAGAAGAAAGCGACAACAACAATGTTTGGACAACGACAGCAGCAGTTA    298
                     |||.|||||.||.||..|.||||||...||      ||||||..||..|.
RBAM_012630__    249 TATCGAAGAGAGTGAGGATAACAATTCGTG------GACAGCTTCACATT    292

BSNT_02164___    299 ATGTCGCAG-CA-----GGTGTCCTGACAGCGACGGACTGGGTATATCTT    342
                     .|||||||| ||     ||.||.|||||.||..|||..|||||.|..||.
RBAM_012630__    293 CTGTCGCAGTCAAAGGCGGAGTGCTGACCGCTTCGGGTTGGGTCTGCCTG    342

BSNT_02164___    343 TCTAAACGCTATTACCGCTTCCGCTATGTGAACGGGAATCTTCAGCAATC    392
                     .|.|||||.||||||||.|||||.|.||..|||||.||||...||||.||
RBAM_012630__    343 ACAAAACGATATTACCGGTTCCGTTTTGAAAACGGAAATCAAAAGCAGTC    392

BSNT_02164___    393 CGAGTTTGTATTATACCAATCGGTCGGTGCG---GGTGAGATGGATGTGC    439
                     |||.|||||.|||||||||||.||||||.||   |||||.|||       
RBAM_012630__    393 CGAATTTGTTTTATACCAATCTGTCGGTACGGGCGGTGATATG-------    435

BSNT_02164___    440 GTGTCAATGGAAAAACGCCTTTACAGATTGACTTTGCGGATAATCAAACA    489
                                     ||.|||.||.||                   |||
RBAM_012630__    436 ----------------GCGTTTTCATAT-------------------ACA    450

BSNT_02164___    490 CACGATGGACGGCTGAAAGTCGAGGCTCGCAAAACATTTGACTTTGTCTT    539
                     .|||                                  |||     |.||
RBAM_012630__    451 GACG----------------------------------TGA-----TTTT    461

BSNT_02164___    540 TCATGAAAAT---GCAGAGTCCGCCGGCGAGGGGGCTGCCTTACCTGTTG    586
                     ||||||||||   ||||||   ||.|||||  |||..||.|  |.|.|.|
RBAM_012630__    462 TCATGAAAATGCAGCAGAG---GCGGGCGA--GGGAAGCAT--CTTCTCG    504

BSNT_02164___    587 ACGGTGCCGCGCATT---------TACTCGTTGAAGTCTACGGCACAGCA    627
                     .|||    |||| ||         |.|||||.|||.||..||||||.||.
RBAM_012630__    505 GCGG----GCGC-TTGGAAAAAACTTCTCGTCGAAATCACCGGCACGGCT    549

BSNT_02164___    628 GAAATGAGCGAAGTCAAATTTTGGGGCAAATCGGTGTCAGGACAGAAAC-    676
                     ||...|.||.|.|||...||||||||.|.|||..|.||.||| |.|||| 
RBAM_012630__    550 GAGTCGGGCCATGTCGCGTTTTGGGGGAGATCCATCTCGGGA-AAAAACG    598

BSNT_02164___    677 TGCCGATCAGAGGCGTGAAAACTGATGATGCTACCACTGCCTCCAGTACA    726
                     |||||||||||||..|.|...||||.||.|..||..|.|||.||.|||||
RBAM_012630__    599 TGCCGATCAGAGGAATCAGGTCTGAAGACGGAACATCAGCCGCCGGTACA    648

BSNT_02164___    727 TTAGGAAAAGCCGAGGCATGGGCCTTTGATATTAAAGGGTTTAAGGAGAT    776
                     |.|||.|.||.|||.|..|||.|.|||||||||...||.||||||||.||
RBAM_012630__    649 TCAGGCACAGACGAAGTGTGGTCATTTGATATTGCCGGCTTTAAGGAAAT    698

BSNT_02164___    777 TATCATGGAGATTATCAGTATCACCGGCGGTACTCTTTCGGTAAAAGGGA    826
                     ..|||||||.||....||.||..|||||||.|..|||||.||.|||||.|
RBAM_012630__    699 CGTCATGGAAATCCAGAGCATTTCCGGCGGGAGCCTTTCTGTCAAAGGCA    748

BSNT_02164___    827 CCGCGGTTTCATAA    840
                     |.||..||||.|||
RBAM_012630__    749 CGGCATTTTCGTAA    762


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02164 and RBAM_012630

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
