Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02170 and RBAM_012680

See Amino acid alignment / Visit BSNT_02170 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_02170___spoIISA.1.9828.seq
#    -bsequence dna-align/RBAM_012680___spoIISA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02170___spoIISA-RBAM_012680___spoIISA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02170___spoIISA-RBAM_012680___spoIISA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02170___spoIISA
# 2: RBAM_012680___spoIISA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 758
# Identity:     555/758 (73.2%)
# Similarity:   555/758 (73.2%)
# Gaps:          22/758 ( 2.9%)
# Score: 1983.0
# 
#
#=======================================

BSNT_02170___      1 ATGGTTTTATTCTTTCAGATCATGGTCTGGTGCATCGTGGCCGGACTGGG     50
                     |||.||||.||.||||||||.|||||.|||...||.|.|||||.|||...
RBAM_012680__      1 ATGCTTTTGTTTTTTCAGATTATGGTGTGGACGATGGCGGCCGCACTCAT     50

BSNT_02170___     51 GTTATACGTGTATGCCACGTGGCGTTTCGAAGCGAAGGTCAAAGAAAAAA    100
                     .|||||.|||||.||..|.|||||.|..||.||.|||||.||||||||||
RBAM_012680__     51 TTTATATGTGTACGCATCCTGGCGGTATGAGGCAAAGGTAAAAGAAAAAA    100

BSNT_02170___    101 TGTCCGCCATCCGGAAAACTTGGTATTTGCTGTTTGTTCTGGGCGCTATG    150
                     |||..||||||||.|||||.||||||||.||.|||||.||||||.|.|||
RBAM_012680__    101 TGTTTGCCATCCGTAAAACGTGGTATTTACTATTTGTACTGGGCTCCATG    150

BSNT_02170___    151 GTATACTGGACATATGAGCCCACTTCCCTATTTACCCACTGGGAACGGTA    200
                     ||.||.|||||||||||.|||...||.||.|||.||.|.|||..||..||
RBAM_012680__    151 GTCTATTGGACATATGATCCCGAATCGCTCTTTGCCGAATGGAGACAATA    200

BSNT_02170___    201 TCTCATTGTCGCAGTCAGTTTTGCTTTGATTGATGCTTTTATCTTCTTAA    250
                     |.|.|||||.||.|||.|.|||||..|.||||||||.||||||||.||.|
RBAM_012680__    201 TTTGATTGTTGCCGTCTGCTTTGCCCTTATTGATGCGTTTATCTTTTTGA    250

BSNT_02170___    251 GTGCATACGTCAAAAAACTGGCCGGCAGCGAGCTTGAAACAGACACAAGA    300
                     |.||.||..|||||||.||.|||||||..||..|.||.||.||.||..|.
RBAM_012680__    251 GCGCGTATATCAAAAAGCTCGCCGGCAATGAATTAGAGACGGATACGCGG    300

BSNT_02170___    301 GAAATTCTTGAAGAAAACAACGAAATGCTCCACATGTACCT----CAATC    346
                     ||||||.|.||||||||.|||||||||||.|||...||.||    .||  
RBAM_012680__    301 GAAATTTTAGAAGAAAATAACGAAATGCTTCACTCCTATCTTGAAAAA--    348

BSNT_02170___    347 GGCTGAAAACATACCAATACCTATTGAAAAACGAACCGATCCATGTTTAT    396
                       ||||||||.||.|||||.||.||||||||.||||||||||||||.|||
RBAM_012680__    349 --CTGAAAACCTATCAATATCTGTTGAAAAATGAACCGATCCATGTATAT    396

BSNT_02170___    397 TATGGAAGTATAGATGCTTATGCTGAAGGTATTGATAAACTGCTGAAAAC    446
                     ||||||||||.|||.||||||||.|||||.||....|.|||||||....|
RBAM_012680__    397 TATGGAAGTACAGAAGCTTATGCGGAAGGCATCAGCAGACTGCTGGCCGC    446

BSNT_02170___    447 CTATGCTGATAAAATGAACTTAACGGCCTCTCTT-TGCCACTATTCGACA    495
                     .|||||.||.||||||||..|.|||||.|| ||| |||.|||||||..||
RBAM_012680__    447 TTATGCCGAAAAAATGAATGTCACGGCTTC-CTTGTGCGACTATTCCGCA    495

BSNT_02170___    496 CAGGCTGATAAAGACCGGTTAACCGAGCATATGGATGATCCGGCAGATGT    545
                     ||.||.|||||.|||||.||.||.|||||||||..||||.||||.||.||
RBAM_012680__    496 CAAGCGGATAAGGACCGCTTGACAGAGCATATGCCTGATGCGGCGGACGT    545

BSNT_02170___    546 ACAAACACGGCTCGATCGAAAGGATGTTTATTACGACCAATACGGAAAAG    595
                     .||..|.||.||..|.||.||.||.||.||.||.||.|||.|.||.|...
RBAM_012680__    546 TCAGTCCCGTCTTAACCGTAAAGACGTCTACTATGATCAAAAAGGCAGGC    595

BSNT_02170___    596 TGGTTCTCATCCCCTTTACCATCGAGACACAGAAC------TATGTCATC    639
                     |.||.||.||.||.|||||..|      .||||||      ||.||.|||
RBAM_012680__    596 TTGTGCTTATTCCGTTTACAGT------TCAGAACCGCCATTACGTGATC    639

BSNT_02170___    640 AAGCTGACGTCTGACAGCATTGTCACGGAATTTGATTATTTGCTATTTAC    689
                     ||.||.|||||.||.|.|.|..|.||||||||.|||||||||||.||.||
RBAM_012680__    640 AAACTCACGTCGGAAAACCTGTTGACGGAATTCGATTATTTGCTTTTCAC    689

BSNT_02170___    690 GTCATTAACGAGCATATATGATTTGGTGCTGCCAATTGAGGAGGAAGGTG    739
                     .||..||||||||||.||||||||..||||||||||.||.||||||||||
RBAM_012680__    690 ATCGCTAACGAGCATTTATGATTTAATGCTGCCAATAGAAGAGGAAGGTG    739

BSNT_02170___    740 AAGGATAA    747
                     |.||.|||
RBAM_012680__    740 ACGGTTAA    747


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02170 and RBAM_012680

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
