Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02173 and RBAM_012700

See Amino acid alignment / Visit BSNT_02173 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_02173___ykaA.1.9828.seq
#    -bsequence dna-align/RBAM_012700___ykaA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02173___ykaA-RBAM_012700___ykaA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02173___ykaA-RBAM_012700___ykaA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02173___ykaA
# 2: RBAM_012700___ykaA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 619
# Identity:     537/619 (86.8%)
# Similarity:   537/619 (86.8%)
# Gaps:           2/619 ( 0.3%)
# Score: 2345.0
# 
#
#=======================================

BSNT_02173___      1 ATGATAAGAAGAAAAAAAGATAAGTTCTCACTCCTTTTAACAGAAATTGC     50
                     |||||||.|||||||||||||||||||||||||||||||||||||||.||
RBAM_012700__      1 ATGATAAAAAGAAAAAAAGATAAGTTCTCACTCCTTTTAACAGAAATCGC     50

BSNT_02173___     51 AAAGAACATAGACGAAACTGCAGAATATTTTGTGAATTTTAAGGTCACTA    100
                     |||.||||||||||||||.||||||||||||||.||.|||||.||.||.|
RBAM_012700__     51 AAAAAACATAGACGAAACCGCAGAATATTTTGTCAACTTTAAAGTGACGA    100

BSNT_02173___    101 ACCAAACGACTCTTAAA-GAATTTGCAGATACGTTAAAGGAATATGAAAC    149
                     ||||.|||||| ||||| ||||||||.|||||||||||.||.|.||||||
RBAM_012700__    101 ACCAGACGACT-TTAAAGGAATTTGCCGATACGTTAAAAGAGTTTGAAAC    149

BSNT_02173___    150 AAAAGGTGACAATCATGTCCATGTCATGATTAAAGAGCTTAACAAAGCGT    199
                     ||||||.||.||||||||.||||||||||||||||||||.||||||||.|
RBAM_012700__    150 AAAAGGAGATAATCATGTTCATGTCATGATTAAAGAGCTGAACAAAGCTT    199

BSNT_02173___    200 TCATCACTCCTATTGAGCGCGAAGATATCCTTCAGCTGACAAACAGCTTG    249
                     |.||||||||.|||||.||.|||||.||||||.||||||||||||||.|.
RBAM_012700__    200 TTATCACTCCCATTGAACGTGAAGACATCCTTGAGCTGACAAACAGCCTC    249

BSNT_02173___    250 GATGATGTGCTTGACGGAATCGAACATTTCTCTGCCATGATGGAAATTTT    299
                     |||||.|||||||||||||||||||||||.||.||.||||||||.|||||
RBAM_012700__    250 GATGACGTGCTTGACGGAATCGAACATTTTTCAGCAATGATGGAGATTTT    299

BSNT_02173___    300 CTCAATTACTTCATCAGACGAGCATATCGATAAATTCAGCGGATACATCA    349
                     |||.||.|||||.||.||.||||||||||||||.||||||||||||||||
RBAM_012700__    300 CTCGATCACTTCTTCCGATGAGCATATCGATAAGTTCAGCGGATACATCA    349

BSNT_02173___    350 GAGAATGCGCGAAAGAGATTTTGATTACGATCGAGCTGCTGGCAGAAAAT    399
                     ||||.||||||||.||.|||||.||.|||||.||||||||.||||||||.
RBAM_012700__    350 GAGAGTGCGCGAAGGAAATTTTAATCACGATTGAGCTGCTTGCAGAAAAC    399

BSNT_02173___    400 CGCTTAAAGGATATTCAGCCTCACGCAATCAAAATAAAAGAGTATGAGCA    449
                     ||.||.|||||.|||||.||||||||.||.|||||.||.||.||.|||||
RBAM_012700__    400 CGATTGAAGGACATTCACCCTCACGCCATTAAAATTAAGGAATACGAGCA    449

BSNT_02173___    450 CAGCTGTGACAACTTGCACAGAAAATCATTAAAGAATCTTTTCGGAAATG    499
                     |||||||||.|||.|||||.|.|||||||||||.|||||.|||||.|..|
RBAM_012700__    450 CAGCTGTGATAACCTGCACCGTAAATCATTAAAAAATCTGTTCGGCACAG    499

BSNT_02173___    500 AAACAGACCCAATCAAAGTCATTCAATATCGTGAAATTTACGAAACGCTT    549
                     ||||.||.||.||.|||||.|||||.||.||.||.|||||||||||||||
RBAM_012700__    500 AAACCGATCCGATTAAAGTGATTCAGTACCGCGAGATTTACGAAACGCTT    549

BSNT_02173___    550 GAAGAAATCGCCGACTCTTGTCAAAGTGTTGCCAATAATCTTGAAACCAT    599
                     ||.|||||.|||||||||||.|||||.|||||||||||.|||||||||||
RBAM_012700__    550 GAGGAAATTGCCGACTCTTGCCAAAGCGTTGCCAATAACCTTGAAACCAT    599

BSNT_02173___    600 CATTATGAAAAACGCGTAA    618
                     .||||||||||||||||||
RBAM_012700__    600 TATTATGAAAAACGCGTAA    618


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