Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02177 and RBAM_012730
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_02177___ykcB.1.9828.seq
# -bsequence dna-align/RBAM_012730___ykcB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02177___ykcB-RBAM_012730___ykcB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02177___ykcB-RBAM_012730___ykcB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02177___ykcB
# 2: RBAM_012730___ykcB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2169
# Identity: 1780/2169 (82.1%)
# Similarity: 1780/2169 (82.1%)
# Gaps: 45/2169 ( 2.1%)
# Score: 7425.5
#
#
#=======================================
BSNT_02177___ 1 GTGGAAAAGAAAAAACGCGAGCTGGATATTTTCCTCATCCTCATTTTGCT 50
|||.|||.|||||||||||||.|.||.....||.|.||..|||||||.||
RBAM_012730__ 1 GTGAAAATGAAAAAACGCGAGATAGACGCAGTCTTAATTGTCATTTTACT 50
BSNT_02177___ 51 CGCATCTGCATTCTTAAATATCTATAACATCTGGAATGATGATACGGTGA 100
|||.||.||||||||.|||||.||.||||||||||||||.||||||||||
RBAM_012730__ 51 CGCTTCCGCATTCTTGAATATGTACAACATCTGGAATGACGATACGGTGA 100
BSNT_02177___ 101 ATCCTTATTACACCGCTGCAGTCACAAGTATGATGCAAAGCTTTCATAAT 150
||||||||||||||||.||.||.||.||||||.|.|||||||||||||||
RBAM_012730__ 101 ATCCTTATTACACCGCAGCGGTAACGAGTATGCTTCAAAGCTTTCATAAT 150
BSNT_02177___ 151 TTTTTCTATGCCTCATTCGACGCGGCGGGGTTTATAACGGTTGATAAACC 200
||.||.||.||.|||||.|||||.||.||||||||.|||||.||||||||
RBAM_012730__ 151 TTCTTTTACGCTTCATTTGACGCAGCCGGGTTTATCACGGTAGATAAACC 200
BSNT_02177___ 201 GCCTATTACGTTTCAGATACAAACCATCAGCGCACTTATATTCGGTATGC 250
||||.||||.|..|||.|.|||||.||||||||.||.|||||||||||||
RBAM_012730__ 201 GCCTGTTACATACCAGGTTCAAACGATCAGCGCGCTGATATTCGGTATGC 250
BSNT_02177___ 251 ACGGCTGGAGCGTCATCCTGCCTCAGGCACTTGCTGGTGTAGGTTCTGTC 300
||||.||||||||||||||||||||||||.|.||.|||||||||||.||.
RBAM_012730__ 251 ACGGGTGGAGCGTCATCCTGCCTCAGGCATTGGCGGGTGTAGGTTCAGTT 300
BSNT_02177___ 301 CTTTTAATGTATCTGTTAATAAAACCGACATTCGGTAAGACAGCAGCAAG 350
||.||.|||||..|.||||||||.|||||.|||||.||.||.||.||..|
RBAM_012730__ 301 CTATTCATGTACTTATTAATAAAGCCGACGTTCGGAAAAACGGCGGCGCG 350
BSNT_02177___ 351 AATTGCCTCTTTCATCATGGCATGTACACCGATTGCTGTAGCTGTAGCAC 400
.||.|||||.||..|||||||.|||||||||||.||.|||||.||.||.|
RBAM_012730__ 351 CATCGCCTCATTTGTCATGGCGTGTACACCGATCGCAGTAGCGGTCGCGC 400
BSNT_02177___ 401 GTACAAACAATGTTGATGCATTACTGGTATTTTTCTTATTGCTTGCTACA 450
|.||.||.|||||.|||||.||||||||.||||||.|.|||.|.||.|||
RBAM_012730__ 401 GGACGAATAATGTCGATGCTTTACTGGTCTTTTTCCTCTTGTTCGCCACA 450
BSNT_02177___ 451 TGGCTTCTCTTTAAAGCGATCAGAAAAGGAAAGCTGATCTGGCTGTTAGC 500
|||||||||||||||||||||||||||||.|..|||||||||||.||.||
RBAM_012730__ 451 TGGCTTCTCTTTAAAGCGATCAGAAAAGGCAGACTGATCTGGCTTTTGGC 500
BSNT_02177___ 501 AGCATTTTTCGTTGTTGGAGTAGGATTTAATACAAAAATGCTGCAGGCTT 550
.||||||||.||.||.||||.|||.|||||.|||||||||||.|||||||
RBAM_012730__ 501 GGCATTTTTTGTCGTCGGAGCAGGCTTTAACACAAAAATGCTTCAGGCTT 550
BSNT_02177___ 551 ACATGATTTTACCGGCTTTCTTATTGTTCTATCTGATTGCGGCAAACGCC 600
|.||||||||.|||||.|||||..||||||||.||||||||||||||.||
RBAM_012730__ 551 ATATGATTTTGCCGGCCTTCTTGCTGTTCTATATGATTGCGGCAAACACC 600
BSNT_02177___ 601 ACAATCAAGAAAAAAATCGTTTCATTGGTAAGTGCGTTAGCCGTATTAGC 650
||.||.||||||||||||.|||||||||||||.|||||||||||.|||||
RBAM_012730__ 601 ACGATTAAGAAAAAAATCATTTCATTGGTAAGCGCGTTAGCCGTTTTAGC 650
BSNT_02177___ 651 AGCCGTTTCGTTATCGTGGCCGCTCATTGTCGACAATATCCCTGCAAGCA 700
|||||||||.||.||.||||||||||||||.||.|||||.|||||.||||
RBAM_012730__ 651 AGCCGTTTCATTGTCATGGCCGCTCATTGTTGATAATATTCCTGCCAGCA 700
BSNT_02177___ 701 AGCGGCCTTATATCGGAAGCAGCCAAACCAACTCTGTTTTGGAATTGGCT 750
|..||||.|||.|||||||||||||.||.|||||.||.||||||||||||
RBAM_012730__ 701 AAAGGCCATATGTCGGAAGCAGCCAGACAAACTCCGTATTGGAATTGGCT 750
BSNT_02177___ 751 TTCGGCTATAACGGAATCCAGCGGCTGACAGGCCAAAATTCAGGCGGCGG 800
|||||.||||||||.||.||||||||||||||.||||.|||.||||||||
RBAM_012730__ 751 TTCGGATATAACGGGATTCAGCGGCTGACAGGGCAAAGTTCCGGCGGCGG 800
BSNT_02177___ 801 CCAGGGTGCGCCAAACAAAGACGCTTCAAAAGAAATGTCTTCTTCTGAT- 849
||||||.|.|||..||..|.||||.||.|||||.|||||||||||.|||
RBAM_012730__ 801 CCAGGGCGGGCCGGACGGAAACGCATCGAAAGAGATGTCTTCTTCCGATG 850
BSNT_02177___ 850 ---------AACACTCAAGCACCGCCTAATCAGTCATCAAGCAACAGCTC 890
|| |..|||..|||||||...|||||.|||||||.|||.||
RBAM_012730__ 851 GTTCTTCACAA-ATGCAAAAACCGCCTGGCCAGTCTTCAAGCAGCAGTTC 899
BSNT_02177___ 891 ATCAAGCGATGGTAAATCCTC-AAATGGCAATATGGCGGCGCCTCCATCC 939
|.||||||..|..||| ||.| |||.||||.||||.||||.||||||||.
RBAM_012730__ 900 AGCAAGCGGAGACAAA-CCACAAAACGGCAGTATGACGGCACCTCCATCT 948
BSNT_02177___ 940 AATGGCCAAATGCCAAGCGGCGGTCAAGGAGGCCCTCCAAGCGGCGGAGA 989
||.||..|||||||||||||||||||||||||.|||||||||||||||||
RBAM_012730__ 949 AACGGGAAAATGCCAAGCGGCGGTCAAGGAGGTCCTCCAAGCGGCGGAGA 998
BSNT_02177___ 990 TGGCGGCCAAGGCGGACCCGGCGGAGACGGAGGGAAAGGCGGTACAGGAA 1039
|||||| ||||||.|||.|||||.||||.|
RBAM_012730__ 999 TGGCGG---------------------CGGAGGAAAAAGCGGTGCAGGCA 1027
BSNT_02177___ 1040 CCGGTTCGAAAATGCAATCAGGTTCAGGGATGTTTGGAACGGGAACACCT 1089
||||.|||||||||||||||||||||||.|||||.|||||||||||.|||
RBAM_012730__ 1028 CCGGCTCGAAAATGCAATCAGGTTCAGGAATGTTCGGAACGGGAACCCCT 1077
BSNT_02177___ 1090 GGTCCACTGCGGCTTTTCCAACAAGAGTTATCTGATCAAATCAGCTGGCT 1139
|||||.|||||.|||||||||...||.|||||||||||.|||||||||||
RBAM_012730__ 1078 GGTCCGCTGCGCCTTTTCCAAACGGAATTATCTGATCAGATCAGCTGGCT 1127
BSNT_02177___ 1140 TCTGCCATTTGCGATTTTTGGAATCGCAGGCTTACTGATCGCTGGCGCGA 1189
.|||||.|||||||||||||||||.||.||.|||.|||||||.||.||||
RBAM_012730__ 1128 CCTGCCGTTTGCGATTTTTGGAATGGCCGGTTTATTGATCGCCGGGGCGA 1177
BSNT_02177___ 1190 GAGAAAGAAGAAGATTATCTATAGAGCAGAAGGAAACGGTGTTCTGGGTT 1239
|||||||||||.|||||||...|||.||||||||||||.|.||.||||..
RBAM_012730__ 1178 GAGAAAGAAGACGATTATCAGCAGAACAGAAGGAAACGATCTTTTGGGCA 1227
BSNT_02177___ 1240 GCGTGGCTTGTACCGATTGCCGGATTCTTCAGTGTCGCAGAATTTTTCCA 1289
|||||||||||.|||||||||||||||||||||||.||.|||||||||||
RBAM_012730__ 1228 GCGTGGCTTGTGCCGATTGCCGGATTCTTCAGTGTGGCGGAATTTTTCCA 1277
BSNT_02177___ 1290 TCATTATTATCTCATCATGCTGGCACCGCCGATTGCGGCTCTTGTCGGTG 1339
.||||||||||||||.||||||||.||.|||||.|||||.||||||||||
RBAM_012730__ 1278 CCATTATTATCTCATTATGCTGGCGCCTCCGATCGCGGCACTTGTCGGTG 1327
BSNT_02177___ 1340 CGGGATGGGTTGCTCTTGTTCATCTGTACCGCAATCAGACAGGCTGGAAA 1389
||||||||||.||.||.|||||||||||||||||.|||.|.||.||||||
RBAM_012730__ 1328 CGGGATGGGTCGCCCTCGTTCATCTGTACCGCAAGCAGGCGGGATGGAAA 1377
BSNT_02177___ 1390 GCATGGCTTTTGCCGGGAGCAATTATTGCGACAACTGGATTTGAATTGTT 1439
.|.|||||.|||||||..||.|||.|||.||||||.||||||||..||||
RBAM_012730__ 1378 ACTTGGCTATTGCCGGCCGCTATTCTTGTGACAACCGGATTTGAGCTGTT 1427
BSNT_02177___ 1440 TATTCTCAGAAACTACAACGATCAAATCGGTGCAGGCTGGAGCATCGGTG 1489
|||.||||||||||||||.|||||||||||.|||||||||||||||||.|
RBAM_012730__ 1428 TATCCTCAGAAACTACAATGATCAAATCGGCGCAGGCTGGAGCATCGGAG 1477
BSNT_02177___ 1490 TAGGTGTTATCGGCGTGTTGTCAGCGATTGCTTTGCTGCTGTTTAAACAG 1539
.|||.|||.||||||...||.||||.||.||..||.|..|.||.||||||
RBAM_012730__ 1478 CAGGCGTTCTCGGCGCAGTGGCAGCAATCGCCCTGTTCGTATTCAAACAG 1527
BSNT_02177___ 1540 CGCCAAAAACCGTTCAGTTATTATGTTTCACTTGCAGCTCTCCTCGCATT 1589
||||||||||||.|.|||||||||||||||||||||||.||..|||..||
RBAM_012730__ 1528 CGCCAAAAACCGCTAAGTTATTATGTTTCACTTGCAGCCCTTTTCGTCTT 1577
BSNT_02177___ 1590 GCTGGTGATGCCGATTTACTGGGCAAGTACACCGCTTCTGTACGGAGGCA 1639
|.||||.|||||||||||.|||||.||.||||||||||||||||||||||
RBAM_012730__ 1578 GATGGTCATGCCGATTTATTGGGCGAGCACACCGCTTCTGTACGGAGGCA 1627
BSNT_02177___ 1640 ACAGCTCACTGCCTGAAACAGGCCCTCAGCTCGCATCAATGAGCGGAAAA 1689
||||||||.|||||||||||||||||||||||||.||||..|||||||||
RBAM_012730__ 1628 ACAGCTCATTGCCTGAAACAGGCCCTCAGCTCGCTTCAACAAGCGGAAAA 1677
BSNT_02177___ 1690 GGCATGGGAATG----TCTGATGCGACTGTAAATGAAAAACTGATCAAAT 1735
|||||||||||| .||.|| ||||.|||..||||||||||||.|
RBAM_012730__ 1678 GGCATGGGAATGGATAACTCAT----CTGTCAATACAAAACTGATCAACT 1723
BSNT_02177___ 1736 ATCTAGAGGAGAATAACTCCGGAGCTGAATACCTATTCGCCACAACCGAT 1785
||.|||||.|..|.|||..||||||.||.||.|||||.||.|||||||||
RBAM_012730__ 1724 ATTTAGAGAAACACAACGACGGAGCGGACTATCTATTTGCTACAACCGAT 1773
BSNT_02177___ 1786 TCGAACACAGCGGCACCATATATCATTAAAACGAAAAAAGCTGTCATGGC 1835
||.|||||.|||||.||.||.||.|||||||||||||||||.||||||||
RBAM_012730__ 1774 TCCAACACGGCGGCGCCTTACATTATTAAAACGAAAAAAGCGGTCATGGC 1823
BSNT_02177___ 1836 TATTGGCGGATACAGCGGTTCTGACCCGGCGATCACACTGACTCAATTCA 1885
.||.|||||||.||||||.|||||||||||.||.||.|||||||||||.|
RBAM_012730__ 1824 GATCGGCGGATTCAGCGGGTCTGACCCGGCCATTACGCTGACTCAATTTA 1873
BSNT_02177___ 1886 AAAAACTTGTAAAAGAAGGAAAAGTGAAATACTTCTTGGCTTCTGGAATG 1935
||||.||.|||||||||||.|||||.|||||||||||..|.||.||||||
RBAM_012730__ 1874 AAAAGCTCGTAAAAGAAGGGAAAGTAAAATACTTCTTAACATCCGGAATG 1923
BSNT_02177___ 1936 GGAAGAGGCGGAAACAATGACATTGTTGAATGGGTTGAGAAAAATGGAAA 1985
||.|.|||||||||.||.||.|||||..|.||||||||||||||.|||||
RBAM_012730__ 1924 GGCAAAGGCGGAAATAACGATATTGTGCAGTGGGTTGAGAAAAACGGAAA 1973
BSNT_02177___ 1986 AGAAGTAGCATCAGAAAAATGGCAATCAAGTTCTGATCAAAAAACAGAAA 2035
..|||||.|.|||||.||||||||||||||..|.|||||.|||||..|||
RBAM_012730__ 1974 GAAAGTATCTTCAGATAAATGGCAATCAAGCACAGATCAGAAAACGAAAA 2023
BSNT_02177___ 2036 ATACTGATTCGGCTGATACATCAAGCAGCAAGGCTTCAGGTGAAAACGGC 2085
|||.||||.|.|||||||||..||||||||||||..|.|||.|||||.||
RBAM_012730__ 2024 ATAGTGATCCAGCTGATACAAAAAGCAGCAAGGCCGCGGGTAAAAACAGC 2073
BSNT_02177___ 2086 AAAATG---GGCGGACCTGGCGGAATGAATCAGTCAGCAACATTATACGA 2132
..|||| |||||.||.||||||||||||||||||||..||.|||||||
RBAM_012730__ 2074 CGAATGAGCGGCGGGCCGGGCGGAATGAATCAGTCAGCTTCACTATACGA 2123
BSNT_02177___ 2133 ACTACATGCTGATGAATAG 2151
|||.||..|||||||||||
RBAM_012730__ 2124 ACTTCAATCTGATGAATAG 2142
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