Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02179 and RBAM_012750
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_02179___htrA.1.9828.seq
# -bsequence dna-align/RBAM_012750___htrA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02179___htrA-RBAM_012750___htrA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02179___htrA-RBAM_012750___htrA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02179___htrA
# 2: RBAM_012750___htrA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1409
# Identity: 1025/1409 (72.7%)
# Similarity: 1025/1409 (72.7%)
# Gaps: 112/1409 ( 7.9%)
# Score: 3715.0
#
#
#=======================================
BSNT_02179___ 1 ATGATGGATAACTATCGTGATGAAA-----ACAGAACGAAAGGTAATGAG 45
||||||||||||||||||||||||| |||||.|.||| ||
RBAM_012750__ 1 ATGATGGATAACTATCGTGATGAAAATCGGACAGACCAAAA-------AG 43
BSNT_02179___ 46 A--ATGAGGTCTTTTTAACGAAAGAGAACGATCAGAGCGCCTCCTACTCG 93
| |.||.|||.|||||...|||||.|||...|||...|||...||.||.
RBAM_012750__ 44 AACAGGAAGTCCTTTTAGTAAAAGAAAACCCGCAGCCGGCCGGATATTCC 93
BSNT_02179___ 94 GC-CCGCAATGTCATTCATGATCAGGAGAAGAAAAAACGAGGATTCGGAT 142
|| ||| ||..||||.||||||||||||.|.|||||.|
RBAM_012750__ 94 GCGCCG-------------GACGAGGACAAGAAAAAACGAAGCTTCGGCT 130
BSNT_02179___ 143 GGTTCAGACCGTTGCTTGGCGGAGTGATCGGCGGCAGTCTCGCCCTTGGC 192
|||||||||||.|.||.|||||||||||||||||..|.||||||||.|||
RBAM_012750__ 131 GGTTCAGACCGCTTCTCGGCGGAGTGATCGGCGGAGGGCTCGCCCTCGGC 180
BSNT_02179___ 193 ATTTACACGTTTACACCGCTTGGCGACCATGATTCTCAGGACACTGCAAA 242
||.||.||.|||||.||||||||.||||||.|..||||.||.|||.|
RBAM_012750__ 181 ATCTATACATTTACGCCGCTTGGAGACCATCAGACTCAAGATACTTC--- 227
BSNT_02179___ 243 ACAATC---ATCCAGCCAGCAGCAAACGCAATCTGTTACAGCAACAAGC- 288
||||| .|||.|| .|||.|||||..|||.||.||.|| |||||
RBAM_012750__ 228 -CAATCCGGCTCCCGC--TCAGGAAACGTCATCGGTAACCGC--CAAGCA 272
BSNT_02179___ 289 -ACCTCCTCTGAATCTAAAA-----AAAGC-TCAAGCAGCTCATCTGC-- 329
||.||.||||||||..|.| |||.| .|||.|||||||||.||
RBAM_012750__ 273 GACATCTTCTGAATCAGACAGCGGCAAATCGGCAAACAGCTCATCGGCAA 322
BSNT_02179___ 330 ATTCAAG-AGCGAGGACTCTTCTAAAATCTCAGATATGGTAGAAGACCTT 378
||||||| ||| ||.||..|||||||.||||||.||
RBAM_012750__ 323 ATTCAAGCAGC---------------ATTTCGAATATGGTGGAAGACATT 357
BSNT_02179___ 379 TCACCAGCGATTGTCGGTATTACAAATCTTCAG--GCA-CAATCAAACAG 425
|||||.|||||.|||||.||.||.|||||.||| ||| || ||.|||
RBAM_012750__ 358 TCACCGGCGATCGTCGGGATCACCAATCTGCAGAAGCAGCA---AAGCAG 404
BSNT_02179___ 426 CTC---TTTGTTCGG------------------------CTCTAGTTCTT 448
.|| |||.||||| |||||.|||.|
RBAM_012750__ 405 TTCCGATTTATTCGGATTCGGATCAAGCTCAGATTCAAACTCTAATTCGT 454
BSNT_02179___ 449 CTGATTCCAGCGAAGATACAGAAAGCGGTTCAGGGTCAGGTGTCATTTTC 498
|.| |.||.|||.|.||||..||.||.||.|||||.||.|||||.
RBAM_012750__ 455 CGG------GTGATGATGCGGAAACGGGATCGGGTTCAGGCGTTATTTTT 498
BSNT_02179___ 499 AAAAAAGAGAATGGCAAGGCTTATATCATTACAAATAACCACGTCGTAGA 548
||.||||..||.|||||.||.|||||||||||.|||||||||||.||.||
RBAM_012750__ 499 AAGAAAGCAAACGGCAAAGCGTATATCATTACGAATAACCACGTGGTCGA 548
BSNT_02179___ 549 AGGGGCATCATCACTGAAGGTATCTTTATATGACGGCACTGAGGTTACTG 598
|||.||.||.||.||.||.||.||.||||.|||||||||.||.||.||.|
RBAM_012750__ 549 AGGCGCCTCTTCCCTTAAAGTGTCATTATTTGACGGCACCGATGTAACAG 598
BSNT_02179___ 599 CAAAGCTGGTAGGCAGTGACTCGTTAACTGATTTAGCCGTCCTCCAAATC 648
|.||.||.||.|||||.|||||..|.||.||.||.|||||..|..|||||
RBAM_012750__ 599 CTAAACTCGTCGGCAGCGACTCTCTGACAGACTTGGCCGTTTTAGAAATC 648
BSNT_02179___ 649 AGTGATGACCACGTCACAAAAGTGGCAAACTTCGGTGATTCATCTGATCT 698
||.|||.|.|||||.||||||..|||||..|||||....|||||.|.|||
RBAM_012750__ 649 AGCGATAAACACGTGACAAAAACGGCAAGTTTCGGCAGCTCATCCGCTCT 698
BSNT_02179___ 699 TAGAACAGGCGAGACCGTTATTGCGATTGGGGATCCGCTTGGAAAAGACC 748
.|||||.||.||..||||.||.||.||.||.||||||||.||||||||||
RBAM_012750__ 699 CAGAACGGGTGAATCCGTCATCGCCATCGGTGATCCGCTCGGAAAAGACC 748
BSNT_02179___ 749 TGTCCCGCACAGTAACACAAGGAATTGTAAGCGGCGTGGACAGAACGGTT 798
|.||||||||.||.||||||||.||.||.||||||.|..|||||||.||.
RBAM_012750__ 749 TTTCCCGCACCGTCACACAAGGCATCGTGAGCGGCTTAAACAGAACCGTC 798
BSNT_02179___ 799 TCAATGTCTACATCAGCCGGCGAAACGAGCATTAACGTCATTCAGACAGA 848
||.||.|||||.|||||||||||..|||||||.||||||||.||.||.||
RBAM_012750__ 799 TCGATCTCTACGTCAGCCGGCGAGTCGAGCATCAACGTCATCCAAACCGA 848
BSNT_02179___ 849 CGCAGCAATTAATCCAGGTAACAGCGGCGGTCCTTTGTTAAATACAGACG 898
.||.||.||.|||||.||.|||||||||||.||..|.||.||||||||||
RBAM_012750__ 849 TGCCGCCATCAATCCCGGAAACAGCGGCGGACCGCTCTTGAATACAGACG 898
BSNT_02179___ 899 GCAAAATTGTCGGCATTAACAGTATGAAAATCAGTGAGGATGATGTTGAG 948
|||||||..|||||||.|||||.|||||||||||.||...||||||.||.
RBAM_012750__ 899 GCAAAATCATCGGCATCAACAGCATGAAAATCAGCGAAAGTGATGTAGAA 948
BSNT_02179___ 949 GGCATCGGATTTGCCATTCCAAGCAATGACGTAAAACCGATTGCTGAAGA 998
||||||||.||||||||.||.|||||.||.|||||||||||.||.|||||
RBAM_012750__ 949 GGCATCGGCTTTGCCATCCCGAGCAACGATGTAAAACCGATCGCCGAAGA 998
BSNT_02179___ 999 ACTGCTGTCTAAAGGCCAAATTGAACGTCCATATATCGGTGTCAGCATGC 1048
.||.||..|.|||||.||..|.||.||.||.||||||||.||.||||||.
RBAM_012750__ 999 GCTTCTCACGAAAGGACAGGTGGAGCGCCCTTATATCGGCGTGAGCATGA 1048
BSNT_02179___ 1049 TTGATCTGGAACAAGTGCCGCAAAATTACCAAGAAGGCACACTCGGCCTG 1098
|.||..|||||||||||||||||||.||.||.||||||||||||||.||.
RBAM_012750__ 1049 TCGACTTGGAACAAGTGCCGCAAAACTATCAGGAAGGCACACTCGGGCTT 1098
BSNT_02179___ 1099 TTCGGCAGCCAGCTGAATAAAGGTGTTTACATCCGTGAGGTCGCTTCA-G 1147
|||||||..||||||||||||||.|||||.||.||.||.||.|| .|| |
RBAM_012750__ 1099 TTCGGCAAACAGCTGAATAAAGGCGTTTATATTCGCGAAGTGGC-GCAGG 1147
BSNT_02179___ 1148 GCTCTCCTGCTGAAAAGGCCGGATTAAAAGCGGAGGATATTATCATCGGC 1197
||||.|||||||..||.||||||||||||||.||.||.||.||.|||.||
RBAM_012750__ 1148 GCTCACCTGCTGCCAAAGCCGGATTAAAAGCAGAAGACATCATTATCAGC 1197
BSNT_02179___ 1198 CTAAAAGGTAAAGAAATTGATACAGGCAGTGAATTGCGCAATATCTTATA 1247
.|||||||.|||||||..|..||.|||||.|||.|.||||||||..|.||
RBAM_012750__ 1198 TTAAAAGGGAAAGAAACCGGCACGGGCAGCGAACTCCGCAATATTCTCTA 1247
BSNT_02179___ 1248 TA--AAGACGCAAAGATCGGTGAAACCGTTGAAGTGAAAATTCTCCGAAA 1295
.| ||.||| |||| ||||....||||||||.|||||.|||.||.||||
RBAM_012750__ 1248 CAAGAATACG-AAAG-TCGGCAGCACCGTTGACGTGAAGATTATCAGAAA 1295
BSNT_02179___ 1296 CGGCAAAGAAATGACGAAAAAAATTAAACTTGA-TCAAAAAGAAGAGAAA 1344
||||||.|||||||||||||||||.|||| ||| ||||||||||||.|.|
RBAM_012750__ 1296 CGGCAAGGAAATGACGAAAAAAATGAAAC-TGACTCAAAAAGAAGAAACA 1344
BSNT_02179___ 1345 ACTTCGTAA 1353
.||||.|||
RBAM_012750__ 1345 TCTTCTTAA 1353
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