Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02185 and RBAM_012810

See Amino acid alignment / Visit BSNT_02185 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_02185___dppE.1.9828.seq
#    -bsequence dna-align/RBAM_012810___dppE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02185___dppE-RBAM_012810___dppE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02185___dppE-RBAM_012810___dppE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02185___dppE
# 2: RBAM_012810___dppE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1654
# Identity:    1241/1654 (75.0%)
# Similarity:  1241/1654 (75.0%)
# Gaps:          56/1654 ( 3.4%)
# Score: 4582.5
# 
#
#=======================================

BSNT_02185___      1 ATGAAACGAGTGAAAAAGCTATGGGGCATGGGT---CTTGCATTAGGACT     47
                              .||||||||..|||||..||.|||   .||||..|.|   |
RBAM_012810__      1 ---------ATGAAAAAGAGATGGGCGATCGGTGTGATTGCTGTTG---T     38

BSNT_02185___     48 TTCGTTTGCGCTGATGGGGTGCACAGCAAATGAACAGGCCGGAAAAGAAG     97
                     |||||||||.||||||||.||.|||||.|||||||||||.||.|.|||| 
RBAM_012810__     39 TTCGTTTGCTCTGATGGGCTGTACAGCCAATGAACAGGCGGGGACAGAA-     87

BSNT_02185___     98 GCAGTCATGATAAGGCAAAA-ACCA--GCGGAGAAAAGGTGCTGTATGTA    144
                          |..|..||.|||||| |.||  |.||.||||.|||||||....|.
RBAM_012810__     88 -----CCCGGAAAAGCAAAAGAACAGGGGGGTGAAACGGTGCTGCGGCTC    132

BSNT_02185___    145 AATAATGAAAATGAACCGACTTCATTCGATCCGCCGATCGGCTTTAATAA    194
                     |||||.||||||||.|||||.|||.|.||||||||||||||.||||||||
RBAM_012810__    133 AATAACGAAAATGAGCCGACCTCACTTGATCCGCCGATCGGATTTAATAA    182

BSNT_02185___    195 TGTGTCATGGCAGCCGTTAAATAACATCATGGAGGGGCTGACGCGTCTTG    244
                     |||.||.|||||||||.|.||||||||||||||.||..|||||.|.||.|
RBAM_012810__    183 TGTTTCCTGGCAGCCGCTGAATAACATCATGGAAGGATTGACGAGGCTCG    232

BSNT_02185___    245 GCGAAGATCATGAGCCCGAGCCGGCAATGGCGGAGAAATGGTCTGTTTCG    294
                     |..|||||.||.|||||||.|||||.||||||||.|..|||...||.||.
RBAM_012810__    233 GAAAAGATAATAAGCCCGAACCGGCCATGGCGGAAAGCTGGAAGGTGTCC    282

BSNT_02185___    295 AAAGATAATAAAACTTACACATTTACGATTCGGGAAAATGCGAAATGGAC    344
                     ...|||||....||.||.||.||.|..||.|||||.||.||..|||||||
RBAM_012810__    283 GCTGATAAGCTGACATATACCTTCAATATCCGGGATAACGCCGAATGGAC    332

BSNT_02185___    345 AAACGGAGATCCTGTAACAGCCGGAGACTTCGAATACGCGTGGAAGCGGA    394
                     |||.||.|||||.||.||.||.|.||||||||..|||||.|||||.||||
RBAM_012810__    333 AAATGGCGATCCCGTTACGGCGGAAGACTTCGTGTACGCCTGGAAACGGA    382

BSNT_02185___    395 TGCTTGATCCGAAAAAAGGCGCTTCATCGGCATTCCTAGGTTATTTTATT    444
                     ||||.||||||||||..|||||.||.||.||.||.||.||.|||.|.||.
RBAM_012810__    383 TGCTCGATCCGAAAACGGGCGCATCTTCCGCTTTTCTCGGCTATATGATC    432

BSNT_02185___    445 GAAGGCGGCGAAGCATATAACAGCGGGAAAGGGAAAAAAGACGATGTGAA    494
                     .|||||||.||||.||.|||||||||.|||||.|||.||||.||.|||||
RBAM_012810__    433 AAAGGCGGGGAAGAATTTAACAGCGGAAAAGGCAAACAAGAAGACGTGAA    482

BSNT_02185___    495 GGTGACGGCAAAGGATGATCGAACCCTTGAAGTTACACTGGAAGCACCGC    544
                     .||.||||||||.|||.|...|||.||||..||.|||.|||..|||||||
RBAM_012810__    483 AGTCACGGCAAAAGATAAAAAAACGCTTGTCGTCACATTGGCGGCACCGC    532

BSNT_02185___    545 AAAAATATTTTCTGAGCGTTGTGTCCAATCCTGCGTATTTTCCGGTAAAT    594
                     |..|.||||||||||||||.|||||||||||.||||||||.|||.|.|||
RBAM_012810__    533 AGGATTATTTTCTGAGCGTCGTGTCCAATCCGGCGTATTTCCCGATTAAT    582

BSNT_02185___    595 GAAAAGGTCGATAAAGACAATCCGAAGTGGTTTGCTGAGGCGGATACATT    644
                     ||.|||||||..||.|...|||||||.|||||..||||.||..|.||.||
RBAM_012810__    583 GAGAAGGTCGCCAAGGCTGATCCGAAATGGTTCACTGAAGCAAAAACCTT    632

BSNT_02185___    645 TGTCGGAAACGGCCCGTTTAAGCTGACGGAATGGAAGCATGATGACAGCA    694
                     ||||||.|||||.|||||.||.||||||||||||||||||||.|||||||
RBAM_012810__    633 TGTCGGCAACGGGCCGTTCAAACTGACGGAATGGAAGCATGACGACAGCA    682

BSNT_02185___    695 TCACAATGGAGAAAAGCGACACGTATTGGGATAAAGATACAGTGAAGCTT    744
                     |.||.||||..||||.|||.|||||||||||||||.|.||.|||||.||.
RBAM_012810__    683 TGACGATGGTCAAAAACGAGACGTATTGGGATAAAAAGACGGTGAAACTG    732

BSNT_02185___    745 GATAAGGTGAAATGGGCGATGGTCAGTGACAGAAATACAGATTACCAGAT    794
                     |||||.||.|.|||||||||||||||||||.|.|||||.||.||.|||||
RBAM_012810__    733 GATAAAGTCACATGGGCGATGGTCAGTGACCGGAATACCGACTATCAGAT    782

BSNT_02185___    795 GTTTCAATCAGGGGAACTTGATACCGCTTATGTCCCTGCTGAGCTGAGTG    844
                     |||.||.||.|||||..|.||||||||.|.|||.||.||.||||||||.|
RBAM_012810__    783 GTTCCAGTCGGGGGATTTGGATACCGCCTTTGTGCCGGCAGAGCTGAGCG    832

BSNT_02185___    845 ATCAGCTGCTTGATCAGGATAACGTCAATAT-------TGTTGACCAGGC    887
                     |.||||||.|.|  .||||.||    |||.|       || .||.|||||
RBAM_012810__    833 AGCAGCTGATGG--GAGGAAAA----AATGTCCGCACGTG-GGATCAGGC    875

BSNT_02185___    888 GGGTCTCTATTTCTATCGATTTAATGTCAACATGGAGCCATTCCAAAATG    937
                     .||.||||||||||||||.|||||.||.||.||||||||.||.|||||||
RBAM_012810__    876 CGGACTCTATTTCTATCGTTTTAACGTAAAAATGGAGCCGTTTCAAAATG    925

BSNT_02185___    938 AAAACATCAGAAAAGCCTTTGCGATGGCTGTGGATCAAGAGGAAATTGTA    987
                     ||||.|||||||||||.||.|||...||..|.|||||..|.|||||....
RBAM_012810__    926 AAAAGATCAGAAAAGCGTTCGCGGCAGCGATTGATCAGAAAGAAATCACG    975

BSNT_02185___    988 AAGTACGTCACGAAAAATAATGAAAAACCGGCGCGCGCCTTTGTATCGCC   1037
                     .|.||.||.||.|||||.|.||||||.|||||.|..|||||||||||.||
RBAM_012810__    976 GATTATGTGACCAAAAACAGTGAAAAGCCGGCACATGCCTTTGTATCCCC   1025

BSNT_02185___   1038 TGGGTTTACGCAGCCTGACGGCAAAGATTTCCGTGAAGCAGGCGG-AGAC   1086
                     .||.|||||.|||||||||||.|||||||||||.|||||.||||| ||  
RBAM_012810__   1026 GGGATTTACTCAGCCTGACGGGAAAGATTTCCGCGAAGCGGGCGGCAG--   1073

BSNT_02185___   1087 TTGA-TCAAGCCTAACGAA--AGCAAAGCGAAGCAGCTGCTAGAAAAGGG   1133
                     ||.| |.||.||..|.|||  ||  ||||.||..|.|||||.|||||.||
RBAM_012810__   1074 TTTATTAAATCCGGATGAATCAG--AAGCCAAAAAACTGCTGGAAAAAGG   1121

BSNT_02185___   1134 CATGAAGGAAGAAAACTATAATAAGCTTCCTGCGATCACGCTTACTTACA   1183
                     ||||...|||||..|.|||.|.|||||.||.||..|.||..|.||.||||
RBAM_012810__   1122 CATGGCAGAAGAGCATTATGACAAGCTGCCCGCCGTTACATTGACATACA   1171

BSNT_02185___   1184 GCACAAAGCCGGAGCATAAAAAGATTGCCGAAGCTATTCAGCAAAAATTG   1233
                     |||||||.|||||||||||.||.||.||.|||||.||||||||.||..|.
RBAM_012810__   1172 GCACAAAACCGGAGCATAAGAAAATAGCGGAAGCGATTCAGCAGAAGCTC   1221

BSNT_02185___   1234 AAAAATAGCCTTGGAGTCGATGTAAAGCTGGCCAATATGGAATGGAACGT   1283
                     ||||.|...||.||..|.||.||.|||||.||||||||||||||||||||
RBAM_012810__   1222 AAAAGTGTGCTCGGTATAGACGTTAAGCTCGCCAATATGGAATGGAACGT   1271

BSNT_02185___   1284 ATTTTTAGAGGATCAAAAAGCGCTGAAATTCCAATTCTCTCAAAGCTCAT   1333
                     .||||||||.||.||.||||..|||||.|||||.||||||||||||||||
RBAM_012810__   1272 CTTTTTAGAAGAGCAGAAAGGACTGAAGTTCCAGTTCTCTCAAAGCTCAT   1321

BSNT_02185___   1334 TTTTGCCTGATTATGCAGACCCTATCAGTTTTCTGGAAGCCTTTCAAACG   1383
                     ||||.||.|||||.|||||.||.|||||||||||.||.||.||.||.|||
RBAM_012810__   1322 TTTTACCGGATTACGCAGATCCGATCAGTTTTCTAGAGGCTTTCCAGACG   1371

BSNT_02185___   1384 GGTAATTCGATGAACCGCACAGGCTGGGCCAATAAAGAATACGATCAGCT   1433
                     |.||||||.|||||||||||.|||||||.||.....|.|||||| |.|||
RBAM_012810__   1372 GATAATTCCATGAACCGCACCGGCTGGGGCAGCGCGGCATACGA-CGGCT   1420

BSNT_02185___   1434 -GATCAAACAGGCGAAAAATGAAGCCGATGAAAAAACACGGTTCTCTCTT   1482
                      .|||||.|||||.|||.|.||||||||||..||||.|||.||..|.||.
RBAM_012810__   1421 ACATCAAGCAGGCAAAACAGGAAGCCGATGCCAAAAAACGTTTTGCGCTC   1470

BSNT_02185___   1483 ATGCATCAAGCTGAAGAGCTGCTCATCAATGAAGCGCCGATCATCCCGGT   1532
                     ||||||.||||.|||.|.||||||||.||.||.||.||||||||.|||.|
RBAM_012810__   1471 ATGCATAAAGCGGAAAAACTGCTCATGAACGAGGCTCCGATCATTCCGAT   1520

BSNT_02185___   1533 TTATTTTTATAATCAGGTTCACCTGCAAAATGAACA----AGTAAAGGGA   1578
                     |||.|||||.||||||||.||.|||||    |||||    .||.|||||.
RBAM_012810__   1521 TTACTTTTACAATCAGGTGCATCTGCA----GAACAGCGGCGTGAAGGGC   1566

BSNT_02185___   1579 ATTGTCCGTCACCCTGTCGGCTATATCGATTTAAAATGGGCAGATAAAAA   1628
                     ||||||||.|||||.|||||.||.||.|||.|.||.|||||.||.||...
RBAM_012810__   1567 ATTGTCCGGCACCCCGTCGGTTACATTGATCTGAAGTGGGCGGAAAAGTC   1616

BSNT_02185___   1629 CTGA   1632
                     ||||
RBAM_012810__   1617 CTGA   1620


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