Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02187 and RBAM_012820

See Amino acid alignment / Visit BSNT_02187 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_02187.1.9828.seq
#    -bsequence dna-align/RBAM_012820___ykfA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02187-RBAM_012820___ykfA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02187-RBAM_012820___ykfA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02187
# 2: RBAM_012820___ykfA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 973
# Identity:     696/973 (71.5%)
# Similarity:   696/973 (71.5%)
# Gaps:          68/973 ( 7.0%)
# Score: 2452.5
# 
#
#=======================================

BSNT_02187         1 TTGAATTACAAGCCGAAAGCGCTGAAAAAGGGTGATACAGTCGGAGTGAT     50
                     .||||..|.||.||||||||.|||.||||.||.||.||.|||||.|||||
RBAM_012820__      1 ATGAACCATAAACCGAAAGCACTGCAAAAAGGCGACACGGTCGGTGTGAT     50

BSNT_02187        51 CGCGCCCGCAAGTCCGCCGGATCAAAAAAAGCTTGAC-------ACCGCT     93
                     .|||||||||||.|||||       |.|.|||..|||       |||||.
RBAM_012820__     51 TGCGCCCGCAAGCCCGCC-------AGAGAGCGGGACGCTGCAAACCGCG     93

BSNT_02187        94 CTTTTATTTTTAG---AAGAGCTCGGTCTTCAGGTGAAGTTGGGCAAGGC    140
                     ||..|.|||||||   |.|||||.||.|||||.|||||..|.|||..|||
RBAM_012820__     94 CTGCTGTTTTTAGAGAATGAGCTTGGCCTTCAAGTGAAACTCGGCCGGGC    143

BSNT_02187       141 GCTGAAAAACCAGCACGGCTATTTAGCGGGACAGGATGATGAGCGGCTGG    190
                     ||||||.|.||..|||||||||||.||||||.||||....|.|||.||.|
RBAM_012820__    144 GCTGAAGACCCGTCACGGCTATTTGGCGGGAGAGGACCGGGCGCGCCTCG    193

BSNT_02187       191 CGGATCTCCATGAGATGTTCAGAGACGAGGAGGTAAAAGCAGTGTTGTGC    240
                     ..|||||||||||.|||||.||.||..||.|.||.|||||.|||.|.|||
RBAM_012820__    194 ATGATCTCCATGACATGTTTAGTGATCAGAATGTCAAAGCGGTGATATGC    243

BSNT_02187       241 GCATGCGGGGGTTTTGGGACAGGACGTATCGCCGCGGGCATTGATTTCAG    290
                     ||.|||||.||.||.||.||.||.||.||.|||||.|.|||.||||||.|
RBAM_012820__    244 GCGTGCGGAGGATTCGGCACGGGCCGCATTGCCGCCGACATCGATTTCGG    293

BSNT_02187       291 CTTGATCCGCAAACACCCTAAAATCTTTTGGGGATACAGCGATATTACGT    340
                     |||.||||||....|.||.|||||.||.|||||||||||.||||||||||
RBAM_012820__    294 CTTAATCCGCCGCAATCCGAAAATTTTCTGGGGATACAGTGATATTACGT    343

BSNT_02187       341 TTTTACATACTGCCATTCATCAAAACACAGGTCTTGTCACCTTCCATGGC    390
                     ||||||||||.||||||||||||||.||.||.||.|||||.||.||.|||
RBAM_012820__    344 TTTTACATACCGCCATTCATCAAAATACGGGGCTCGTCACATTTCACGGC    393

BSNT_02187       391 CCAATGCTCAGCTCGGACATTGGCCTTGACGACGTTCACCCGCTGACAAA    440
                     ||.|||||.|||.|.||..|.||.|||||.||.|.|.|.||.||||||||
RBAM_012820__    394 CCGATGCTGAGCACCGATGTCGGGCTTGAAGATGCTGATCCCCTGACAAA    443

BSNT_02187       441 AGCGTCATATAAGCAGC-TCTTCCAGGAGACGGAATTCACCTATACAGAA    489
                     ||||||.|||...|||| |.||.|| ||.|||||||||||||||||.||.
RBAM_012820__    444 AGCGTCGTATCGTCAGCTTTTTACA-GAAACGGAATTCACCTATACGGAG    492

BSNT_02187       490 GAGCTTTCTCC---------GCTGACCGCGCTTGTTCCTGGAAAAGCGGA    530
                     ||..|||||||         ||||||.| ||        ||||..||.||
RBAM_012820__    493 GACATTTCTCCCTTAGAGGTGCTGACAG-GC--------GGAAGGGCCGA    533

BSNT_02187       531 AGGCGAGCTTGTCGGG-GGAAATCTGTCTTTGCTGACGTCTACACTGGGC    579
                     .||.||||||| |||| ||.||||||||..|..|.|||||.|||||.|||
RBAM_012820__    534 GGGAGAGCTTG-CGGGCGGCAATCTGTCGCTCATTACGTCCACACTCGGC    582

BSNT_02187       580 ACGCCATTTGAAATTGATACGAGAGGAAAGCTTCTGTTTATTGAAGATAT    629
                     |||||.||||||||||||||.|.||..||..|.||||||||.||.|||||
RBAM_012820__    583 ACGCCGTTTGAAATTGATACAAAAGACAAATTGCTGTTTATCGAGGATAT    632

BSNT_02187       630 TGACGAGGAGCCTTATCAAATCGACCGAATGCTAAATCAGTTGAAAATGG    679
                     |||.||||||||.||||||||||||.|||||||.|||||.||.||.||||
RBAM_012820__    633 TGATGAGGAGCCGTATCAAATCGACAGAATGCTGAATCAATTAAAGATGG    682

BSNT_02187       680 CGGGGAAGCTGACGGACGCGGCCGGAATTCTAGTTTGTGATTTTCACAAT    729
                     |.||.||.|||.|.|||||.||||||||.||.||.||||||||||||.|.
RBAM_012820__    683 CCGGAAAACTGTCAGACGCAGCCGGAATCCTGGTCTGTGATTTTCACCAA    732

BSNT_02187       730 TGTGTCCCGGTGAAGC---GAGAGAAGTCTCTCTCGCTTGAGCAGGTGCT    776
                     ||.|..||   |||.|   .|||.|||||.||..|..|.|||||.|||||
RBAM_012820__    733 TGCGAACC---GAAACATAAAGAAAAGTCGCTTACTTTAGAGCAAGTGCT    779

BSNT_02187       777 GGAAGACTATATT-----ATTTCTGCGGGCAGGCCTGCTCTGAGAGGATT    821
                     |.|.||.||.|||     ||     |.||.|.|||.||.||.|.|||.||
RBAM_012820__    780 GAACGATTACATTGTCAAAT-----CAGGGAAGCCCGCGCTCAAAGGCTT    824

BSNT_02187       822 TAAAATCGGCCACTGCTCGCCAAGTATTGCCGTTCCGATCGGTGCGAAAG    871
                     ||||||||||||.||.||.||.||..|.||||||||||||||.||....|
RBAM_012820__    825 TAAAATCGGCCATTGTTCACCGAGCTTCGCCGTTCCGATCGGAGCCCGCG    874

BSNT_02187       872 CTGCTATGAATACAGCAGAAAAAACAGT--CGTAATAGAGGCGGGCGTTT    919
                     |.|.||||.||||.||.|..|||.|.||  ||  ||.||..||||.||||
RBAM_012820__    875 CGGTTATGGATACGGCGGCCAAAGCGGTAACG--ATTGAATCGGGGGTTT    922

BSNT_02187       920 CAGAAGGGGCGCTGAAGACATGA    942
                     |.|.|.|||.| |||        
RBAM_012820__    923 CCGGAAGGGAG-TGA--------    936


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02187 and RBAM_012820

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
