Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02188 and RBAM_012830

See Amino acid alignment / Visit BSNT_02188 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02188___ykfB.1.9828.seq
#    -bsequence dna-align/RBAM_012830___ykfB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02188___ykfB-RBAM_012830___ykfB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02188___ykfB-RBAM_012830___ykfB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02188___ykfB
# 2: RBAM_012830___ykfB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1131
# Identity:     801/1131 (70.8%)
# Similarity:   801/1131 (70.8%)
# Gaps:          84/1131 ( 7.4%)
# Score: 2794.0
# 
#
#=======================================

BSNT_02188___      1 ------ATGA-AAATCATTCGAATCGAAACAAGCCGAATCGCAATTCCGC     43
                           ||.| |.|| ||||      ||||..|.||.||..|..|.||||
RBAM_012830__      1 GTGAGGATTACAGAT-ATTC------AAACGGGACGGATGTCCGTGCCGC     43

BSNT_02188___     44 TGACAAAGCCGTTTAAAACCGCGCTTCGCACTGTGTATACGGCTGAATCA     93
                     |||.||||||||||||.|||||..|.|||||.||.||.|..||||||||.
RBAM_012830__     44 TGAAAAAGCCGTTTAAGACCGCTTTACGCACGGTTTACAATGCTGAATCG     93

BSNT_02188___     94 GTCATAGTAAGGATTACTTATGACAGCGGTGCAG-TCGGATGGGGAGAAG    142
                     |||||.||.|.|.|.||||.|||||.|||| |.| .|||.|||||.||.|
RBAM_012830__     94 GTCATTGTGAAGCTCACTTTTGACAACGGT-CTGACCGGCTGGGGGGAGG    142

BSNT_02188___    143 CACCCCCGACGTTAGTGATTACAGGAGACAGCATGGATAGCATTGAAAGT    192
                     |.||.||||||.|.||.||||||||.||||||..|||..|.||||||||.
RBAM_012830__    143 CGCCGCCGACGGTTGTCATTACAGGCGACAGCGCGGACGGTATTGAAAGC    192

BSNT_02188___    193 GCCATTCACAATGTTTTAAAACCGGCATTGCTTGGAAAAAGCCTGGCGGG    242
                     |||.|.|||.||||..|.||.||.|| |..|||||         ||||||
RBAM_012830__    193 GCCGTCCACGATGTGCTGAAGCCCGC-TCTCTTGG---------GGCGGG    232

BSNT_02188___    243 CTAT----------GAGGCCATTCTGCACGACATCCAGCATCTTCTT--A    280
                     ..||          ||.||..||.||...||.|| ||||....|.||  |
RBAM_012830__    233 GCATTTCCGGCATGGAAGCTGTTTTGTTTGATAT-CAGCCGGCTGTTGGA    281

BSNT_02188___    281 CAGGAAATATGAGCGCGAAGGCTGCTGTAGAAATGGCTCTATACGACGGC    330
                      |.|||||...|||||.||.||.||.||.||.||||||.||||.|||||.
RBAM_012830__    282 -AAGAAATCAAAGCGCAAAAGCCGCGGTGGATATGGCTGTATATGACGGA    330

BSNT_02188___    331 TGGGCGCAGATGTGCGGGCTGCCGCTTTATCAAATGCTTGGCGGATATCG    380
                     ||||||||.|||..|||.|.|||||||||.|...|.||.|||||.|||||
RBAM_012830__    331 TGGGCGCAAATGCACGGACAGCCGCTTTACCGGCTTCTCGGCGGCTATCG    380

BSNT_02188___    381 AGATACACTGGAAACAGATTATACCGTCAGTGTCAACTCACCTGAAGAGA    430
                     ..||||||||||||||||||.|||||||||.||.|||||.|||||.||||
RBAM_012830__    381 GAATACACTGGAAACAGATTTTACCGTCAGCGTTAACTCTCCTGAGGAGA    430

BSNT_02188___    431 TGGCAGCTGATGCCGAGAATTATCTCAAACAAGGCTTTCAAACGCTGAAA    480
                     ||||.|..|||||.||...||||.|.||..||||.|||||.|...|.||.
RBAM_012830__    431 TGGCGGGGGATGCAGACCGTTATGTGAACAAAGGATTTCATATTTTAAAG    480

BSNT_02188___    481 ATAAAGGTCGGAAAAGATG--ATATTGCAACAGATATCGCCCGTATCCAG    528
                     |||||.|||||.|.||.||  ||||.|.|  .|||.|.|||||.||.|||
RBAM_012830__    481 ATAAAAGTCGGCATAGGTGACATATCGGA--CGATGTTGCCCGGATTCAG    528

BSNT_02188___    529 GAAATCAGAAAACGTGTCGG----ATCAGCTGTGAAACTGCGTTTAGACG    574
                     |..||||||..|||||||||    |.|    ||.||||||.|..|.||||
RBAM_012830__    529 GCGATCAGATCACGTGTCGGCGGAAAC----GTCAAACTGAGACTGGACG    574

BSNT_02188___    575 CTAATCAGGGGTGGAGGCCGAAGGAAGCGGTAACTGCCATTCGGAAAATG    624
                     ||||.||.||.||||.||||||.|||||.||.||.||.||.||.||.|||
RBAM_012830__    575 CTAACCAAGGCTGGACGCCGAAAGAAGCCGTGACCGCGATCCGAAAGATG    624

BSNT_02188___    625 GAGGATGCGGGTCTAGGCATTGAGCTTGTCGAGCAGCCTGTCCATAAAGA    674
                     ||.||.||.||.||.|||||||||||.||||||||||||||.||.|||||
RBAM_012830__    625 GAAGACGCCGGCCTCGGCATTGAGCTGGTCGAGCAGCCTGTTCACAAAGA    674

BSNT_02188___    675 CGATCTCGCTGGGCTTAAAAAGGTGACAGATGCAACAGATACGCCGATTA    724
                     ||||.||||.|||||.||..||||.||||||||...|||.||||||||||
RBAM_012830__    675 CGATATCGCCGGGCTGAAGCAGGTCACAGATGCCGTAGACACGCCGATTA    724

BSNT_02188___    725 TGGCTGATGAAAGTGTTTTTACACCGCGCCAGGCGTTCGAAGTTCTGCAA    774
                     ||||.|||||.||.||.|||||.||.||.|||||.||..|.||.|||||.
RBAM_012830__    725 TGGCGGATGAGAGCGTCTTTACCCCCCGTCAGGCCTTTCACGTGCTGCAG    774

BSNT_02188___    775 ACCCGGAGCGCAGACTTGATCAATATTAAATTGATGAAAGCGGGCGGCAT    824
                     ||..|.|||||.||.||.||.||||||||..|||||||||||||||||||
RBAM_012830__    775 ACGAGAAGCGCCGATTTAATTAATATTAAGCTGATGAAAGCGGGCGGCAT    824

BSNT_02188___    825 -CAGCGGAGCAGAGAAAATTAATGCTATGGCGGAGGCCTGCGGGGTGGAG    873
                      .|||.| ||.||.|.|||.|||||.|||||.||..|.|||||.|||||.
RBAM_012830__    825 AAAGCAG-GCGGAAACAATCAATGCGATGGCAGAAACGTGCGGCGTGGAA    873

BSNT_02188___    874 TGTATGGTCGGCAGCATGATCGAAACGAAGCTGGGCATTACGGCCGCGGC    923
                     ||.|||||||||||||||||.||.||.|||||.|||||.||.||||||||
RBAM_012830__    874 TGCATGGTCGGCAGCATGATTGAGACCAAGCTCGGCATCACCGCCGCGGC    923

BSNT_02188___    924 GCATTTTGCGGCAAGCAAGAGAAACATCACACGCTTTGATTTTGACGCGC    973
                     .||||||||.||...|||..|.||..|.|||.|.|||||||||||.||||
RBAM_012830__    924 TCATTTTGCCGCGGCCAAACGGAATGTGACAAGGTTTGATTTTGATGCGC    973

BSNT_02188___    974 CGCTGATGCTGAAAACAGATGT-ATTCAAAGGCGGCATAACATATAGCGG   1022
                     ||||.|||||||||...|||.| |||| ||||||||||.|||||.|||||
RBAM_012830__    974 CGCTTATGCTGAAAGATGATTTGATTC-AAGGCGGCATCACATACAGCGG   1022

BSNT_02188___   1023 CAGTACGATTTCGATGCCTGGCAAACCGGGCCTCGGAATCACCGGGACTG   1072
                     ||||..||||.||||.||.|.|.|||||||.||||||||.|||||   ||
RBAM_012830__   1023 CAGTCAGATTGCGATTCCCGACGAACCGGGTCTCGGAATTACCGG---TG   1069

BSNT_02188___   1073 CGCTTTGA-----------------------   1080
                     .|  |.||                       
RBAM_012830__   1070 TG--TCGATACAAGAGGGGGCGAAAAGATGA   1098


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