Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02191 and RBAM_012860

See Amino acid alignment / Visit BSNT_02191 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_02191___ykgB.1.9828.seq
#    -bsequence dna-align/RBAM_012860___ykgB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02191___ykgB-RBAM_012860___ykgB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02191___ykgB-RBAM_012860___ykgB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02191___ykgB
# 2: RBAM_012860___ykgB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1066
# Identity:     786/1066 (73.7%)
# Similarity:   786/1066 (73.7%)
# Gaps:          32/1066 ( 3.0%)
# Score: 2770.0
# 
#
#=======================================

BSNT_02191___      1 ATGACAAAATACATAGGATATGTGGGAACATATACAAAAGGCGGAAGCGA     50
                     |||.|.||.|||||||||||.|.|||||||||||||||||||||||||||
RBAM_012860__      1 ATGGCTAAGTACATAGGATACGCGGGAACATATACAAAAGGCGGAAGCGA     50

BSNT_02191___     51 AGGAATTTATTCATTTGAGCTTGATACTGAGAA---AAAAGCACTCAGCG     97
                     |||.|||||||..|||||.||||||||  ||||   |||.| .||||||.
RBAM_012860__     51 AGGCATTTATTGTTTTGAACTTGATAC--AGAAGCGAAACG-GCTCAGCC     97

BSNT_02191___     98 AGCCAAAGCTGGCCGCTAAGCTGGGCAACCCGACATATGTGGCGCCGAAT    147
                     ..||.||||||||.||.|||||.||||||||||||||.||..|.||||||
RBAM_012860__     98 GTCCGAAGCTGGCAGCAAAGCTCGGCAACCCGACATACGTCACTCCGAAT    147

BSNT_02191___    148 AAAAACAACACCATCCTTTATTCCATCGAAAAAGCAGACGGCCAAGGCGG    197
                     ....|.||||.|||.||.||||||||.|||||.||||||||..|||||||
RBAM_012860__    148 TCTGATAACAGCATGCTGTATTCCATTGAAAAGGCAGACGGAAAAGGCGG    197

BSNT_02191___    198 AGTTGCTGCCTATCAAATCGATAAAAACAGCGGCGAATTGACATTTCTGA    247
                     .||.||.||||||||.||..||.|.||||||||.||.||.||.|||.|||
RBAM_012860__    198 CGTCGCAGCCTATCAGATTCATCAGAACAGCGGGGAGTTAACTTTTGTGA    247

BSNT_02191___    248 ATCATCAGTTAATTGATGGCCCTTCGCCATGCCACGTAAGCGTTGATGAT    297
                     |.||.|||.|.|||||.|||||.||.|||||||||||.|||.||||||||
RBAM_012860__    248 ACCACCAGCTGATTGAAGGCCCGTCTCCATGCCACGTCAGCATTGATGAT    297

BSNT_02191___    298 CAAAATCAATTCGTACTGACTGCCAATTATCACAGCGGGAAGGTACACGT    347
                     .||.||.|||..||..|.||.||.|||||.||||||||.||.||.||||.
RBAM_012860__    298 AAACATGAATATGTGTTAACCGCTAATTACCACAGCGGAAAAGTGCACGC    347

BSNT_02191___    348 TTTTCCGGTTCAGGAAGACGGCAGCTTGCAATCACCTGTTTCAGAGGCCG    397
                     .|||||.||..|.||||||||.||..|||.....||.|.|.|.||.||||
RBAM_012860__    348 CTTTCCCGTCAATGAAGACGGAAGTCTGCGGGAGCCGGCTGCCGAAGCCG    397

BSNT_02191___    398 CTCACACAGGAAAAGGGCCGCACGAAAGACAAGAAAAACCGCATACACAC    447
                     ||||.||.||||.|||.||.||.|||||||||||.|||||||||||.||.
RBAM_012860__    398 CTCATACGGGAACAGGTCCTCATGAAAGACAAGAGAAACCGCATACCCAT    447

BSNT_02191___    448 TACGCGGGGTTCACACCTGAACACAATTATGTGGTAGCGGTTGATTTAGG    497
                     |.|||.||.|..||||||||.||.||.||..|.|.|||.||.||||||||
RBAM_012860__    448 TTCGCAGGCTATACACCTGAGCATAACTACATTGCAGCCGTCGATTTAGG    497

BSNT_02191___    498 TATAGATAAGCTCTACACCTATAAGCTGAAAGACGGTGTGTTGAC-----    542
                     .|..||||.|||.||.||.||..|..|||||.|||||..|.|.||     
RBAM_012860__    498 GACGGATACGCTTTATACTTACCAAATGAAAAACGGTTCGCTCACAGAGG    547

BSNT_02191___    543 TGAATCCGGAAGCCATTCCTTCGCTCCCGGTGCAGGACCTCGCCATATCG    592
                     ||||     ||..||.||.|||||.||.|||.||||.||.|||||.||||
RBAM_012860__    548 TGAA-----AACTCACTCTTTCGCACCGGGTTCAGGGCCGCGCCACATCG    592

BSNT_02191___    593 CTTTTCATCCGAAAGAAAAATACGCTTATGTCATGACAGAATTAAGCAAT    642
                     .|||.||||||...|||||||||||.|||||||||||.|||.|.||.|||
RBAM_012860__    593 TTTTCCATCCGGCGGAAAAATACGCCTATGTCATGACGGAAATCAGTAAT    642

BSNT_02191___    643 GAAGTGATTGCGCTTGAATACAACCCGACAGCCGGCGAATTTAGAGAAAT    692
                     |||||.|||||||||||||||||||||||....||.|||||.|||||..|
RBAM_012860__    643 GAAGTCATTGCGCTTGAATACAACCCGACCTTAGGTGAATTCAGAGAGCT    692

BSNT_02191___    693 CCAAGTCGTTTCTGCCATCCCTGATGATTTTACAGATAACAGC-CAGGGA    741
                     .||.|||.||||.||..|.|||||.|..|||||.||.|| |.| ||.||.
RBAM_012860__    693 GCAGGTCATTTCCGCTTTGCCTGAAGGCTTTACGGACAA-ATCGCAAGGC    741

BSNT_02191___    742 AGCGCAAT--ACATGTC-ACGCAGGACGGACGTTTTGTTTATGTCGCAAA    788
                     |||||.||  .|||.|| |   |.|||||..|.|||.||||||..||.||
RBAM_012860__    742 AGCGCGATCCGCATATCTA---AAGACGGCAGATTTCTTTATGCTGCCAA    788

BSNT_02191___    789 CCGCGGCCATGACAGTATCGCCGTATTTGAAG-TGAATCAATATTCAGGA    837
                     ||||||.||||||||.||||||.|.|.| ||| |.||.||||||||.||.
RBAM_012860__    789 CCGCGGACATGACAGCATCGCCATCTAT-AAGATCAACCAATATTCCGGC    837

BSNT_02191___    838 GAGCTGGCTTTCGTAGAAAGAGTGTCGACAGAAGGAAACTGGCCTCGTGA    887
                     ||..||.||.|..|.|||.|.|||.|||||||||||||||||||.|||||
RBAM_012860__    838 GAATTGTCTCTTATTGAATGGGTGCCGACAGAAGGAAACTGGCCGCGTGA    887

BSNT_02191___    888 TTTTGTATTTGACCCAACGGAAGGGTTCCTCGTTGCTTCAAATGAAGAAA    937
                     |||.|..||||||||..|.||....|||||.||.||.|||||.|||||||
RBAM_012860__    888 TTTCGCGTTTGACCCTTCTGAGACATTCCTTGTCGCGTCAAACGAAGAAA    937

BSNT_02191___    938 CAGGCAACCTTGTCTTGTTTGAAAGAGACAAAGAAACCGGCCGATTGACA    987
                     |.||.||.||.||.|||||||||.|.||....|||||.|||..||||||.
RBAM_012860__    938 CGGGAAATCTGGTTTTGTTTGAACGTGATCCGGAAACGGGCAAATTGACT    987

BSNT_02191___    988 CTCCTCCCATC-AACGGTTTCTGTCCCTTACCCGGTTT--GTGTAAAGTT   1034
                     ||.||.|.||| .|| .||.|.||.||.||.|||||.|  ||||.|  ||
RBAM_012860__    988 CTGCTTCAATCTGAC-ATTCCGGTTCCGTATCCGGTCTGCGTGTCA--TT   1034

BSNT_02191___   1035 TTTACATCAAGTATAA   1050
                     |.|.|||||.||.|||
RBAM_012860__   1035 TCTGCATCAGGTTTAA   1050


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