Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02193 and RBAM_012870
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_02193.1.9828.seq
# -bsequence dna-align/RBAM_012870___ykgA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02193-RBAM_012870___ykgA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02193-RBAM_012870___ykgA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02193
# 2: RBAM_012870___ykgA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 893
# Identity: 324/893 (36.3%)
# Similarity: 324/893 (36.3%)
# Gaps: 451/893 (50.5%)
# Score: 920.5
#
#
#=======================================
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 1 ATGGACGTATCCATTCCCAAATCCACGCGGAAACCGGCTTGCCGCAGTGA 50
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 51 GTTTGATGCTTTGCAGACAGTCATCTTATGCCGGCCGGAACACATGGCCA 100
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 101 TCAAGGATATTATTAACGGAACGCAGAAACATTTCAAACAAGAAAATATT 150
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 151 AACATACCCGTTGCCCTCAAACAGCATAGTGAGTTTATTGACATTTTAAG 200
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 201 ATCTCATCAGATTGAAGTCGTCCTGCTGCCTGCCGATCCCGCATTGCCTG 250
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 251 AGCAGGTATTCACCCGGGATATCGGATTTGTCTTAGGGGAGACGGCGTTT 300
BSNT_02193 0 -------------------------------------------------- 0
RBAM_012870__ 301 ATTTCAAACATGGCGGCTTCAGTCCGGCAGGGAGAAGAAAAAGTGTTTCA 350
BSNT_02193 1 ----ATGCTTGATA---------------------------------CGA 13
.|||||||.| |||
RBAM_012870__ 351 AAACCTGCTTGACAATAAGAAAATCCCCTATACGCGACTGAAAAAAGCGA 400
BSNT_02193 14 GTATTGAAGGCGGAGACGTCATTATCGATGATGACATTGTCTATGTCGGA 63
..|||||||||||.|||.||.|.||||..||.|.||...|.||.|.|||.
RBAM_012870__ 401 ACATTGAAGGCGGCGACATCTTGATCGCAGACGGCACCATTTACGCCGGG 450
BSNT_02193 64 ATCAGCCAGCGCACCGTCATTTCAGCTATCGGCCAGCTGGAAGAGGCACT 113
.|.|||.|||||||.|..|...|.|||.||.|..|||||...|||||.||
RBAM_012870__ 451 CTGAGCGAGCGCACGGATAAAGCGGCTGTCCGGGAGCTGCGGGAGGCGCT 500
BSNT_02193 114 TCCTGAGTAT----------ACGATCGTTCCAGTGAAGCTGCATGAAAAA 153
.||.||| || .||||| ||..|.||| ||..|.
RBAM_012870__ 501 GCCGGAG-ATGACTGTTGTGCCGATC---CCTCTCAAG------GAGGAT 540
BSNT_02193 154 TTTTTGCATTTGGACTGCGTATTTAACATTGTATCTGAAAGCGAAGCGTT 203
||.||.|||||||||||.||||||||.||..|.||.||||..||||||.|
RBAM_012870__ 541 TTCTTACATTTGGACTGTGTATTTAATATGATCTCGGAAACGGAAGCGCT 590
BSNT_02193 204 AATTTA-TCCACA---GGCCATTGAGCCAG-ATGCAGCCGATATGCTGGC 248
| || |.||.| ||| |||.|.||| |.|.|...|||.|.||.||
RBAM_012870__ 591 A---TACTGCAAAAATGGC--TTGCGGCAGAAAGAAATTGATCTTCTCGC 635
BSNT_02193 249 AAAACGTTATGATCTTATTGAGGTGCCCGAGGACGAACAATTTACGCTTG 298
..||||||.|||..|.||.||.|||||.||.||.||.|||||.|||||.|
RBAM_012870__ 636 CGAACGTTTTGAGATGATAGAAGTGCCTGAAGAAGAGCAATTCACGCTCG 685
BSNT_02193 299 GCACCAACGTCCTTTCAATCGAAAAAAAAACGATCATCAGTCTCCCTGGC 348
||.|.||..||||.|||||||..||..|.||.||.|||||.||.|| ||
RBAM_012870__ 686 GCCCGAATATCCTGTCAATCGGCAATCAGACAATTATCAGCCTGCC--GC 733
BSNT_02193 349 A--ACCGCCATGTCAATCAAC----AGCTATCGAAAAGAGGCTATCACA- 391
| ||||.||| |..||| ||||....||||||||.||| |||
RBAM_012870__ 734 AGCACCGTCAT----ACGAACCGCGAGCTCAGAAAAAGAGGTTAT-ACAG 778
BSNT_02193 392 TTATCGAAATTGACCTGTCAGAAATTATTAAATCAGGCGGCTCCTTCAGG 441
|.||.||||..||..|.||.||||||||||||||||||||.||||||.|.
RBAM_012870__ 779 TCATTGAAACCGAGTTTTCCGAAATTATTAAATCAGGCGGTTCCTTCCGC 828
BSNT_02193 442 TGCTGCACAATGCCGCT-----GA-----TTCGAGGCGAATGA 474
||||||||..||||||| || || ||
RBAM_012870__ 829 TGCTGCACCTTGCCGCTTGTCAGAACATCTT-------AA--- 861
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