Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02206 and RBAM_012940

See Amino acid alignment / Visit BSNT_02206 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_02206___proA.1.9828.seq
#    -bsequence dna-align/RBAM_012940___proA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02206___proA-RBAM_012940___proA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02206___proA-RBAM_012940___proA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02206___proA
# 2: RBAM_012940___proA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1288
# Identity:     941/1288 (73.1%)
# Similarity:   941/1288 (73.1%)
# Gaps:          80/1288 ( 6.2%)
# Score: 3321.5
# 
#
#=======================================

BSNT_02206___      1 ATGAGTGAAGTTTCTG-TAAAAGCGAAGC--TTGCGAAAGAAGCAGCAGC     47
                     |||||||||||.| || .||||||  |||  |.||.||||||||.||.||
RBAM_012940__      1 ATGAGTGAAGTAT-TGCAAAAAGC--AGCCTTGGCAAAAGAAGCGGCTGC     47

BSNT_02206___     48 CGAAATGATCATGAAAACAACAGCCGAGAAGGATGAGGCGCTCAGCCTC-     96
                     |||||||.||||||||||.||.||.||.||..|.||.|||||     || 
RBAM_012940__     48 CGAAATGGTCATGAAAACGACGGCTGAAAAAAACGAAGCGCT-----TCA     92

BSNT_02206___     97 ----ATTGCAAACGGACTCCGCAAAGAACTG------GATTTTCTCTTGG    136
                         ||||||.||||||||.|.||.|||| |      ||||     ||..
RBAM_012940__     93 ATGTATTGCAGACGGACTCAGAAATGAAC-GCCGGCTGATT-----TTAA    136

BSNT_02206___    137 CGGAGAATGCA-AAAGACATTG----TGAACGGAAAAGA-GAATGGTTTA    180
                     |.|||||| || |||||.||||    .|.||||||.||| ||.||     
RBAM_012940__    137 CAGAGAAT-CAGAAAGATATTGAAGCGGGACGGAACAGAGGACTG-----    180

BSNT_02206___    181 ACACCGGACATCATTGACCGTCTCACATTGGATGAGAAACGTATACGCGA    230
                     |||||.|||||.||||||.|.||.||..|.|||||.|||||..|.|.|||
RBAM_012940__    181 ACACCTGACATTATTGACAGGCTGACTCTTGATGAAAAACGCCTGCTCGA    230

BSNT_02206___    231 TATCGCGGACGCGGTGGAGCTCTTAATC-GACTTAGCGGACCCAATCGGC    279
                     ||||||||||||.|||||.||.|||||| |.||| |..||.||..||||.
RBAM_012940__    231 TATCGCGGACGCCGTGGAACTATTAATCGGTCTT-GAAGATCCCGTCGGT    279

BSNT_02206___    280 GACTCTCTTGAAACGATTGAAAAAGAAAACGGCCTGTTTATTGAAAAAAT    329
                     ||.||.||.||.||.|||.|||||||.||.||..|.|..|||||||||||
RBAM_012940__    280 GAATCGCTGGAGACCATTCAAAAAGAGAATGGATTATCCATTGAAAAAAT    329

BSNT_02206___    330 CCGTGTGCCGCTCGGTGTCGTAGGAATGATTTATGAGGCGAGGCCAAACG    379
                     |||.|||||.||.||.||.||.||.|||||.||||||||.||.||.||||
RBAM_012940__    330 CCGCGTGCCCCTTGGAGTAGTGGGCATGATCTATGAGGCCAGACCGAACG    379

BSNT_02206___    380 TCACAGTTGATGCGGCTACCCTTTGCCTGAAGACAGGGAACGCGGTTGTG    429
                     |.||.||.||.|||||.||.||.||.|||||.||.||.||||||||||||
RBAM_012940__    380 TTACCGTAGACGCGGCCACACTCTGTCTGAAAACCGGAAACGCGGTTGTG    429

BSNT_02206___    430 CTGCGGGGAAGCTCCTCAGCCATCCACAGCAACAAAGCGCTCGTCAGTGT    479
                     ||..|.|||||.||.||.||||||||||||||||.||||||.||||||||
RBAM_012940__    430 CTCAGAGGAAGTTCTTCCGCCATCCACAGCAACATAGCGCTTGTCAGTGT    479

BSNT_02206___    480 CATTCACAGAGCACTTGAGCAATCAGCGCTTCCGATTCACGCTGTGCAGC    529
                     .||..|..|.|||||.|.||..|||..||||||||||.|.||.||.||||
RBAM_012940__    480 GATGAAACGCGCACTGGGGCTGTCAAAGCTTCCGATTGATGCCGTTCAGC    529

BSNT_02206___    530 TGATTGAGGATACGAGCAGAGAGACAGCAAAAGAGCTCTTTACGTTAAAT    579
                     |.||.||.|||||.||||.|||.||.||.|||.||||||||||.||||||
RBAM_012940__    530 TCATAGAAGATACAAGCAAAGAAACCGCCAAACAGCTCTTTACATTAAAT    579

BSNT_02206___    580 GATGGTTTAGACGTATTGATTCCGCGCGGAGGCAAGAAACTGATTGATCT    629
                     ||.||..|.||.||||||||.||||||||.||.||.||..|.||||||||
RBAM_012940__    580 GACGGGCTGGATGTATTGATCCCGCGCGGCGGTAAAAATTTAATTGATCT    629

BSNT_02206___    630 CGTTGTGAGAGAATCAACAGTTCCTGTATTAGAAACGGGAGCAGGAAACT    679
                     .||.||.||.||||||||.||.||.||.||||||||.|||||.||.||.|
RBAM_012940__    630 AGTGGTCAGGGAATCAACCGTACCCGTTTTAGAAACCGGAGCGGGCAATT    679

BSNT_02206___    680 GCCACATATTCATTGACGAAACAGCCAAACCTCAAATGGCAGAAAAGGTT    729
                     |||||.|.|.|||.||.||..||||..|.||||||||||||....||||.
RBAM_012940__    680 GCCACGTGTACATAGATGAGTCAGCAGATCCTCAAATGGCAAGCGAGGTC    729

BSNT_02206___    730 GTCGTAAATGCCAAAACTCAGCGCCCTTCTGTATGCAACGCGATTGAATC    779
                     |||.|.|||||||||||.|||||.|||||.||.|||||||||||||||||
RBAM_012940__    730 GTCATCAATGCCAAAACACAGCGTCCTTCGGTCTGCAACGCGATTGAATC    779

BSNT_02206___    780 ATTGCTGATTC----ACAAGGCTTGGGC--AAGACAGCACGG--GAAAGA    821
                     ..|..||||||    |.||    |||||  |||  |.|||||  ||||| 
RBAM_012940__    780 TCTTTTGATTCATGAAAAA----TGGGCCGAAG--AACACGGACGAAAG-    822

BSNT_02206___    822 ATTGCTGGACCAGCTG---GAAAACGCGGGAGTTGAAATTCGGGGTGA--    866
                      .|||||.|.||||||   |||||   .||.||.||..|.||.||.||  
RBAM_012940__    823 -CTGCTGAATCAGCTGACAGAAAA---AGGGGTGGAGCTCCGAGGAGACC    868

BSNT_02206___    867 ---TGAATTG--GTATGTGAACTTCATCCTTCAAGC-AAACAAGCATCAA    910
                        |||.|||  |       |||..|.|| |||||| |||||||||..|.
RBAM_012940__    869 AGGTGATTTGCAG-------ACTGGAGCC-TCAAGCGAAACAAGCAGAAG    910

BSNT_02206___    911 AAGAAGATTGGGAAACCGAATTCTTAGCGCCTGTCCTCAGCGTAAAAACG    960
                     |||..|||||||.|.|.||.|.|.|.|||||..|.|||||.||.||||||
RBAM_012940__    911 AAGCCGATTGGGGAGCGGAGTACCTGGCGCCGATTCTCAGTGTGAAAACG    960

BSNT_02206___    961 GTTGAAAACGTCCAAGAAGCTGTGAAGCATATCCAACAATACGGCACCAA   1010
                     ||..|..||||.||.||.||.||....||.||.||.||.||||||||.||
RBAM_012940__    961 GTGCAGGACGTACAGGAGGCGGTCCGCCACATTCAGCAGTACGGCACAAA   1010

BSNT_02206___   1011 TCATTCTGAAGCGATTTTAACTGAAAATGACAAAAACGCAGCATATTTTC   1060
                     .|||||.|||||.|||.|.||.||.||.|.|.|..|.||.||.||.||.|
RBAM_012940__   1011 CCATTCAGAAGCCATTCTGACGGAGAACGCCGAGCATGCGGCTTACTTCC   1060

BSNT_02206___   1061 AAACGGCTGTCGATGCTGCCGCTGTCTATCATAACGCGTCAACCCGCTTT   1110
                     |.||.||.||.||.||.|||||.||.||||||||.||.||||||||.|||
RBAM_012940__   1061 AGACCGCCGTTGACGCCGCCGCCGTGTATCATAATGCTTCAACCCGGTTT   1110

BSNT_02206___   1111 ACCGACGGCTTTGAATTCGGCTACGGAGCCGAAATCGGCATCAGCACGCA   1160
                     ||.|||||.|||||||||||.|||||||||||||||||||||||||||||
RBAM_012940__   1111 ACGGACGGTTTTGAATTCGGATACGGAGCCGAAATCGGCATCAGCACGCA   1160

BSNT_02206___   1161 AAAGCTTCATGCAAGAGGACCGATGGGGCTTCCTGCACTGACTTCTACAA   1210
                     |||||||||.||.|||||.||||||||||||||.||..|.||.|||||||
RBAM_012940__   1161 AAAGCTTCACGCGAGAGGGCCGATGGGGCTTCCGGCGTTAACATCTACAA   1210

BSNT_02206___   1211 AATACATCATTAAAGGAACTGGGCAAATCCGTGAATAG   1248
                     ||..||||||.|||||||..||.||||||||.|.|||.
RBAM_012940__   1211 AAATCATCATCAAAGGAAACGGACAAATCCGCGTATAA   1248


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