Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02218 and RBAM_013040
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Amino acid alignment /
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02218___metE.1.9828.seq
# -bsequence dna-align/RBAM_013040___metE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02218___metE-RBAM_013040___metE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02218___metE-RBAM_013040___metE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02218___metE
# 2: RBAM_013040___metE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2317
# Identity: 1839/2317 (79.4%)
# Similarity: 1839/2317 (79.4%)
# Gaps: 56/2317 ( 2.4%)
# Score: 7270.0
#
#
#=======================================
BSNT_02218___ 1 ATGACAACCATCAAAACATCGAATTTAGGATTTCCGAGAATCGGACTGAA 50
||||||||.||||||||.|||||..|.||.||||||||||||||..||||
RBAM_013040__ 1 ATGACAACAATCAAAACTTCGAACCTCGGTTTTCCGAGAATCGGCTTGAA 50
BSNT_02218___ 51 CCGGGAATGGAAAAAAGCACTTGAAGCGTATTGGAAAGGCAGTACTGATA 100
|.|.||||||||||||.|.|||||.||.|||||||||||.|..|||||.|
RBAM_013040__ 51 CAGAGAATGGAAAAAAACGCTTGAGGCTTATTGGAAAGGTAACACTGACA 100
BSNT_02218___ 101 AAGATACGTTT-TTGAAGCAAATCGACGAACTATTTTTATCCGCAGTAAA 149
||||.|||||| ||.||| |..|.||||...||||.|||||.||.||.||
RBAM_013040__ 101 AAGAAACGTTTCTTAAAG-AGCTTGACGGTTTATTCTTATCAGCTGTCAA 149
BSNT_02218___ 150 AACACAAATTGACCAGCAGATTGATGTTGTGCCTGTTTCTGATTTCACAC 199
||||||..|||||||.||.||.|||.|.|||||.||.|||||||||||.|
RBAM_013040__ 150 AACACAGCTTGACCAACATATCGATATCGTGCCGGTCTCTGATTTCACCC 199
BSNT_02218___ 200 AGTATGACCATGTACTCGACACAGCAGTCAGCTTCAACTGGATCCCGAAA 249
|.|||||||||||.||.||.|||||.||||||||.||||||||.||||||
RBAM_013040__ 200 ATTATGACCATGTGCTTGATACAGCCGTCAGCTTTAACTGGATTCCGAAA 249
BSNT_02218___ 250 CGTTT---CAGACATTTGACTGACGCTACC---GATACATACTTCGCTAT 293
.|.|| ||| || |.||.|| |.|| |||||||||||.||.||
RBAM_013040__ 250 AGATTCCGCAG-CA--TCACGGA---TCCCGTTGATACATACTTTGCGAT 293
BSNT_02218___ 294 CGCCCGCGGAATCAAAGACGCCGTATCTAGTGAAATGACAAAATGGTTTA 343
.||||||||..|.|||||||||||.||.|||||||||||.||||||||||
RBAM_013040__ 294 TGCCCGCGGTGTAAAAGACGCCGTTTCCAGTGAAATGACGAAATGGTTTA 343
BSNT_02218___ 344 ATACAAATTACCATTACATCGTTCCGGAATATGACGAGAGCATTGAGTTC 393
||||.||.|||||||||||||||||.|||||||||||.||||||||.|||
RBAM_013040__ 344 ATACCAACTACCATTACATCGTTCCTGAATATGACGAAAGCATTGAATTC 393
BSNT_02218___ 394 CGTCTGACAAGAAACAAACAACTCGAAGATTATCGCCGGATCAAACAGGA 443
||||||||.|||||||||||.||.||.||.||.||||||||||||.|.||
RBAM_013040__ 394 CGTCTGACGAGAAACAAACAGCTTGACGACTACCGCCGGATCAAAGAAGA 443
BSNT_02218___ 444 ATACGGTGTGGAAACAAAGCCTGTGATTGTCGGCCCTTATACGTTCGTTA 493
||.|||.|.||||||.||.|||||.||.|||||.||.|||||.||.||.|
RBAM_013040__ 444 ATTCGGAGCGGAAACGAAACCTGTCATCGTCGGTCCGTATACATTTGTCA 493
BSNT_02218___ 494 CGCTTGCTAAAGGCTATGAACCATCTGAAGCAAAAGCGATCCAAAAACGC 543
|||||||.|||||.||.|||..|||.|||||.||||||||.|||||||||
RBAM_013040__ 494 CGCTTGCGAAAGGATACGAAGAATCAGAAGCGAAAGCGATTCAAAAACGC 543
BSNT_02218___ 544 CTTGTGCCATTATATGTACAGCTTTTGAAAGAGCTTGAAGAAGAAGGCGT 593
|||||.||..|.|||||.|||||..|||||||.|||||||..||||||||
RBAM_013040__ 544 CTTGTTCCTCTTTATGTTCAGCTGCTGAAAGAACTTGAAGCTGAAGGCGT 593
BSNT_02218___ 594 AAAATGGGTTCAAATCGATGAGCCGGCGCTCGTTACCGCCTCTAGTGAAG 643
||||||||||||.||||||||||||||.||.||.||.||.|||..|||||
RBAM_013040__ 594 AAAATGGGTTCAGATCGATGAGCCGGCCCTTGTGACAGCTTCTTCTGAAG 643
BSNT_02218___ 644 ATGTCCGCGGCGCAAAAGAATTATTTGAAAGCATTACAAGTGAGCTTTCA 693
|.|||||.|.||||||||||.|.|.||||...|||||||..|||||||||
RBAM_013040__ 644 ACGTCCGTGCCGCAAAAGAACTCTATGAATCTATTACAAAAGAGCTTTCA 693
BSNT_02218___ 694 TCCTTGAATGTGCTTTTGCAGACGTATTTTGATTCTGTTGATGCTTATGA 743
....|||||||.||..|||||||.||.||.|||||.||||||||.|||||
RBAM_013040__ 694 GGGCTGAATGTCCTCCTGCAGACATACTTCGATTCGGTTGATGCATATGA 743
BSNT_02218___ 744 AGAGCTGATCTCTTACCCGGTTCAGGGAATTGGCCTTGATTTCGTTCACG 793
|||.||..|.||.||.||.||.||||||||.||.|||||.|||||.||.|
RBAM_013040__ 744 AGAACTCGTTTCGTATCCTGTACAGGGAATCGGGCTTGACTTCGTACATG 793
BSNT_02218___ 794 ACAAAGGCAGAAACCTGGAACAGCTTAAAACACATGGCTTTCCGACAGAC 843
|.||||||||||||||.||.|||||.||||..||.|||||.||||.|||.
RBAM_013040__ 794 ATAAAGGCAGAAACCTTGATCAGCTGAAAAAGCACGGCTTCCCGAAAGAT 843
BSNT_02218___ 844 AAAGTGCTGGCAGTTGGCGTTATCGACGGACGCAACATTTGGAAAGCGGA 893
|||||||||||||..||.||.||||||||.||.||||||||||||...||
RBAM_013040__ 844 AAAGTGCTGGCAGCCGGTGTGATCGACGGCCGAAACATTTGGAAAATCGA 893
BSNT_02218___ 894 CCTTGAAGAGCGTCTCGATGCCGTTCTTGATATTCTCAGCATTGCAAAAG 943
..|||||||.||.||.||.||.|.|||.|||||.||||||...||..|.|
RBAM_013040__ 894 TGTTGAAGAACGCCTTGACGCGGCTCTGGATATCCTCAGCCACGCTGATG 943
BSNT_02218___ 944 TTGATGAACTGTGGATTCAGCCTTCCAGCAGCCTGTTGCATGTTCCGGTA 993
||||.||..|.||||||||||||||.||||||||..||||.||.|||||.
RBAM_013040__ 944 TTGAGGAGTTATGGATTCAGCCTTCAAGCAGCCTTCTGCACGTGCCGGTG 993
BSNT_02218___ 994 GCGAAACACCCTGATGAGCATTTGGAAAAAGACCTATTGAACGGATTATC 1043
||||||||||||||.||||||.|.|||||.||..|..|||||||..|.||
RBAM_013040__ 994 GCGAAACACCCTGACGAGCATCTTGAAAAGGATTTGCTGAACGGCCTGTC 1043
BSNT_02218___ 1044 CTACGCAAAAGAGAAGCTGGCCGAGCTGACAGC--TTTGAAAGAAGGTTT 1091
.|||||.|||||.||.|||||.||.|| |.|| .||.||||||||..|
RBAM_013040__ 1044 ATACGCTAAAGAAAAACTGGCGGAACT--CGGCGTCTTAAAAGAAGGGCT 1091
BSNT_02218___ 1092 AGTATCAGGAAAAGCGGCGATCAGCGAAGAGAT-------TC---AGCAG 1131
..|.||.||.||||||||..||||.||..|||| || ||| |
RBAM_013040__ 1092 TCTGTCCGGCAAAGCGGCCGTCAGTGAGCAGATCGAAGAATCAAAAGC-G 1140
BSNT_02218___ 1132 GC---TAAGGCTGATATCCAGGCGCTTAAACAG--TTTGCAACAGGCGCC 1176
|| ||||||| ||||| || ||.||||||||.||.
RBAM_013040__ 1141 GCACTTAAGGCT-------------TTAAA-AGCATTCGCAACAGGAGCG 1176
BSNT_02218___ 1177 AATTCTGAACAAAAGAAAGAGCTTGAGCAATTAACTGATAAAGACTTCAA 1226
||.||.|..|||||..|||||||..|.||..|.||.||.|||||.|||..
RBAM_013040__ 1177 AACTCAGCTCAAAAAGAAGAGCTGAATCAGCTGACGGAAAAAGATTTCTC 1226
BSNT_02218___ 1227 GCGTCCGATTCC--GTTTGAAGAACGTTTAGCCCTGCAAAATGAATCTCT 1274
.|||||| .|| .|||||||||||.||.||.|||||.||||||||.||
RBAM_013040__ 1227 CCGTCCG--GCCAGCTTTGAAGAACGATTGGCGCTGCAGAATGAATCACT 1274
BSNT_02218___ 1275 CGGCCTTCCGCTTTTGCCGACGACAACGATCGGCAGCTTCCCGCAGTCTG 1324
|||.||.||.|||.||||||||||.||.|||||.||.|||||.||.||||
RBAM_013040__ 1275 CGGTCTCCCCCTTCTGCCGACGACGACAATCGGAAGTTTCCCTCAATCTG 1324
BSNT_02218___ 1325 CTGAAGTGCGGAGCGCACGCCAAAAATGGCGGAAAGCTGAGTGGTCCGAT 1374
|.||.||||||||||||||.|||||||||||.|||...||.|||.|.|||
RBAM_013040__ 1325 CAGAGGTGCGGAGCGCACGGCAAAAATGGCGAAAAAAAGATTGGACGGAT 1374
BSNT_02218___ 1375 GAACAGTATCAAAACTTTATCAATGCGGAAACAAAAAGATGGATTGATAT 1424
||||||||.|||..||||||.|||||||||||.||..|.|||.||||.||
RBAM_013040__ 1375 GAACAGTACCAAGCCTTTATTAATGCGGAAACGAAGCGCTGGGTTGACAT 1424
BSNT_02218___ 1425 TCAGGAAGAATTGGAGCTT-GATGTCCTTGTTCACGGCGAATTTGAACGG 1473
||||||||||.|.| |||| ||.||.||.||||||||.|||||.||.|||
RBAM_013040__ 1425 TCAGGAAGAAATCG-GCTTAGACGTGCTCGTTCACGGAGAATTCGAGCGG 1473
BSNT_02218___ 1474 ACAGACATGGTCGAATACTTCGGTGAAAAGCTGGCCGGTTTCGCCTTCAC 1523
||.||||||||||||||||||||||||||.||||||||.||||||||.||
RBAM_013040__ 1474 ACGGACATGGTCGAATACTTCGGTGAAAAACTGGCCGGATTCGCCTTTAC 1523
BSNT_02218___ 1524 TAAATATGCCTGGGTTCAATCATACGGCTCACGCTGTGTCCGCCCGCCAG 1573
.||||||||.|||||.||.||.|||||.||||||||.||.||.|||||.|
RBAM_013040__ 1524 GAAATATGCATGGGTGCAGTCTTACGGTTCACGCTGCGTACGTCCGCCTG 1573
BSNT_02218___ 1574 TCATTTACGGAGATGTTGAATTTATTGAACCGATGACAGTGAAAGACACA 1623
||||||.|||||||||.||||||||.|||||||||||.||.|||||.||.
RBAM_013040__ 1574 TCATTTTCGGAGATGTCGAATTTATCGAACCGATGACGGTAAAAGATACG 1623
BSNT_02218___ 1624 GTCTACGCACAGTCATTGACTTCCAAGCATGTGAAAGGAATGCTGACGGG 1673
||||||||.||.||..||||....||.||..|||||||.|||||||||||
RBAM_013040__ 1624 GTCTACGCCCAATCGCTGACGGAAAAACACATGAAAGGCATGCTGACGGG 1673
BSNT_02218___ 1674 CCCGGTTACAATCTTAAACTGGTCTTTCCCTCGAAACGACATCTCGAGGA 1723
.||.||.||.||||||||||||||.|||||.||....||.||.||.||.|
RBAM_013040__ 1674 ACCTGTCACCATCTTAAACTGGTCATTCCCGCGTGTGGATATTTCAAGAA 1723
BSNT_02218___ 1724 AAGAAATCGCCTTCCAAATCGGGCTTGCCCTTCGCAAAGAAGTTAAAGCG 1773
||||||||||||||||.||||||||||||||..|.||||||||.||||||
RBAM_013040__ 1724 AAGAAATCGCCTTCCAGATCGGGCTTGCCCTCAGAAAAGAAGTAAAAGCG 1773
BSNT_02218___ 1774 CTTGAAGACGCAGGCATTCAAATCATTCAAGTCGATGAACCAGCGCTGCG 1823
||||||||.||.||.|||||.||.||.|||||.||||||||.|||||.||
RBAM_013040__ 1774 CTTGAAGATGCCGGTATTCAGATTATCCAAGTGGATGAACCCGCGCTCCG 1823
BSNT_02218___ 1824 TGAAGGCCTTCCATTGAAAACCCGCGATTGGGATGAGTATTTGACTTGGG 1873
.|||||.||.||.||.|||||.|..|||||||||||.|||||.|||||||
RBAM_013040__ 1824 CGAAGGACTGCCGTTAAAAACGCAGGATTGGGATGAATATTTAACTTGGG 1873
BSNT_02218___ 1874 CGGCAGAAGCTTTCAGATTAACCACTTCTTCCGTGAAAAACGAGACACAA 1923
|.||||||||.|||.|.|||||.||.|||||.|||.||||.|||||.||.
RBAM_013040__ 1874 CCGCAGAAGCATTCCGGTTAACGACGTCTTCTGTGCAAAATGAGACGCAG 1923
BSNT_02218___ 1924 ATTCATACACATATGTGCTACAGCAACTTCGAAGATATCGTTGATACAAT 1973
||||||||.||||||||.|||||||||||.|||||||||||.|||||.||
RBAM_013040__ 1924 ATTCATACGCATATGTGTTACAGCAACTTTGAAGATATCGTAGATACGAT 1973
BSNT_02218___ 1974 CAATGATCTTGATGCCGATGTGATTACAATCGAACATAGCAGAAGCCACG 2023
||||||||||||.||.|||||.||||||||||||||.|||||||||||||
RBAM_013040__ 1974 CAATGATCTTGACGCGGATGTCATTACAATCGAACACAGCAGAAGCCACG 2023
BSNT_02218___ 2024 GAGGATTTTTAGATTACTTAAAAAACCACCCGTATTTGAAAGGGCTTGGC 2073
|||||||||||||.||.||.|||.|.||.||.||..|||||||.||.||.
RBAM_013040__ 2024 GAGGATTTTTAGAATATTTGAAAGAACATCCTTACGTGAAAGGCCTCGGA 2073
BSNT_02218___ 2074 CTTGGTGTATATGACATTCACAGCCCTCGTGTGCCGTCAACTGAAGAAAT 2123
||.||||||||.||||||||||||||.|||||||||.|||||||||||||
RBAM_013040__ 2074 CTCGGTGTATACGACATTCACAGCCCGCGTGTGCCGGCAACTGAAGAAAT 2123
BSNT_02218___ 2124 GTA-CAATATTATCGTTGATGCGCTTGCCGTCTGTCCGACTGACCGCTTC 2172
.|| ||| |||||.|.|||.|||||||..||.||||||||||||||||||
RBAM_013040__ 2124 CTATCAA-ATTATTGATGACGCGCTTGAAGTGTGTCCGACTGACCGCTTC 2172
BSNT_02218___ 2173 TGGGTAAATCCGGACTGCGGATTGAAAACAAGACAGCAGGAAGAAACGGT 2222
||||||||.||||||||||||.|||||||||||||||||||||||||.||
RBAM_013040__ 2173 TGGGTAAACCCGGACTGCGGACTGAAAACAAGACAGCAGGAAGAAACCGT 2222
BSNT_02218___ 2223 TGCAGCATTGAAAAACATGGTTGAAGCCGCAAAACAGGCAAGAGCAAAGC 2272
|||.|||||.|||||.|||||.||.|||||.|||||||||.||..|||.|
RBAM_013040__ 2223 TGCGGCATTAAAAAATATGGTCGACGCCGCGAAACAGGCACGAAAAAAAC 2272
BSNT_02218___ 2273 AGACACAGCTAGTATAA 2289
|..|.|||||.||||||
RBAM_013040__ 2273 AAGCTCAGCTTGTATAA 2289
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Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.