Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02224 and RBAM_013080
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:55
# Commandline: needle
# -asequence dna-align/BSNT_02224.1.9828.seq
# -bsequence dna-align/RBAM_013080___ykoD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02224-RBAM_013080___ykoD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02224-RBAM_013080___ykoD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02224
# 2: RBAM_013080___ykoD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1791
# Identity: 1115/1791 (62.3%)
# Similarity: 1115/1791 (62.3%)
# Gaps: 300/1791 (16.8%)
# Score: 3213.5
#
#
#=======================================
BSNT_02224 1 ATGCAAGCCTTTGATGAGCTTCTTAAGGTTGACGAGCTCAGCTTCTCTTA 50
|||||.||.|.|||....|||||...||..|.|...||.|.|||.|||||
RBAM_013080__ 1 ATGCAGGCATGTGAGCCCCTTCTATCGGCCGGCCGTCTTACCTTTTCTTA 50
BSNT_02224 51 TGAAGAAGACGAGAAACCGGTTTTTCAAGACATTTCGTTTGAGCTTCAAA 100
|||..|.||.||.||.|||.||.|||||.||.|.||.|||.||||.|..|
RBAM_013080__ 51 TGATCAGGATGAAAAGCCGATTCTTCAAAACGTGTCCTTTCAGCTCCGCA 100
BSNT_02224 101 AAGGAGAATGTGTTTTATTATTAGGACCGAGCGGGTGCGGTAAAAGCTCG 150
|||||||..|.|.||||||..|.||.||||||||.|||||.|||||||||
RBAM_013080__ 101 AAGGAGAGCGGGCTTTATTGCTCGGGCCGAGCGGATGCGGCAAAAGCTCG 150
BSNT_02224 151 CTCGCCCTTTGTTTAAACGGTCTATATCCGGAGGCTTGCGACGGCATTCA 200
|||||.||.||||||||||||||.||.|||||.||.|||||.||..||||
RBAM_013080__ 151 CTCGCTCTCTGTTTAAACGGTCTGTACCCGGAAGCATGCGATGGGGTTCA 200
BSNT_02224 201 GTCCGGA--CATGTATTT-----------CTATTTCAAAAGCCGGTC--A 235
.||.||| |.|.|.||| ||.|||||.| || |
RBAM_013080__ 201 ATCGGGAACCGTTTCTTTATACGGAACACCTCTTTCACA------TCTGA 244
BSNT_02224 236 CAGATGCTGAGACCTCCCAAACGATTGCTCAG---CATGCCGGGGTCGTT 282
|||| |||..|| || ||| ||| |||.|||||.
RBAM_013080__ 245 CAGA-------ACCCGCC--------GC-CAGATCCAT--CGGCGTCGTG 276
BSNT_02224 283 TTTCAGGATCCTGATCAGCAGTTCTGCATGCTGACGGTGGAGGACGAAAT 332
|||||.|||||.||.||||||||.||||||||||||||.||.||.|||||
RBAM_013080__ 277 TTTCAAGATCCGGACCAGCAGTTTTGCATGCTGACGGTCGAAGATGAAAT 326
BSNT_02224 333 TGCATTCGGGCTGGAAAATCTGCAAATTCCAAAAGAAGAAATGACAGAGA 382
.||.|||||.|||||||||.|||||..|.||||||||||.||| ||..
RBAM_013080__ 327 CGCCTTCGGCCTGGAAAATTTGCAATATACAAAAGAAGATATG---GACG 373
BSNT_02224 383 AAATCAAC----ACCGTATTAGAAAAATT-GCGCATTACCCATTTAAAAG 427
.|||||.| | |||.||||||||||| |.| ||.||.|||.| |
RBAM_013080__ 374 CAATCATCGATGA-CGTTTTAGAAAAATTAGAG-ATCACTCATCT----G 417
BSNT_02224 428 AAAA----AACGATATCTACCCTTTCAGGAGG-ACAAAAGCAAAAAGTGG 472
|||| ||||||..||.|.||.|||||.|| .||||| ||||||||||
RBAM_013080__ 418 AAAACGCGAACGATCGCTTCGCTGTCAGGCGGTTCAAAA-CAAAAAGTGG 466
BSNT_02224 473 CTCTCGCCTGTATTTTGGCGATGGAGCCTGAGCTTATTATTTTAGATGAG 522
|.||.||||||||..|.||||||||.||.||.||.||||||||.||.||.
RBAM_013080__ 467 CGCTTGCCTGTATCATTGCGATGGAACCGGAACTCATTATTTTGGACGAA 516
BSNT_02224 523 CCGACCTCTCTTTTAGACCCTT--TC-----TCAGCGCGGGAGTTCGTTC 565
|||||..|.| || ||| || ||.||.||.||.||.||.|
RBAM_013080__ 517 CCGACGGCAC----AG---CTTGATCCACATTCCGCACGTGAATTAGTGC 559
BSNT_02224 566 ATCTGATGAAGGATCTTC-AGCGGGAAAAAGGTTTCAGCCTCCTCGTCAT 614
..|||||.||.||||||| ||| ..|||||||.|||.||||.|||||.||
RBAM_013080__ 560 GGCTGATCAAAGATCTTCAAGC-AAAAAAAGGCTTCGGCCTTCTCGTTAT 608
BSNT_02224 615 TGAGCACCAGCTTGATGAATGGGCGCCTTGGATTGAGAGAACGATCGTAC 664
.||.||.|||||||||.|.||||||||.|||||.||.||.|||||.||.|
RBAM_013080__ 609 CGAACATCAGCTTGATCATTGGGCGCCGTGGATGGACAGGACGATTGTCC 658
BSNT_02224 665 TCGACAAATCAGGCAAAAAGGCGCTGGATGGCTTGACGAA--AAATCTAT 712
|.|||.||.|.||..|.||||.|.||||.||...||||.| ..|||| |
RBAM_013080__ 659 TTGACGAAACGGGTCAGAAGGTGATGGACGGAGAGACGGACGTTATCT-T 707
BSNT_02224 713 TTCAGCA-----TGAAGCGGAGACACTAAAGAAATTGGGCATCACCATTC 757
|..|.|| |||||.|..|| ||.|| .|.|||||..|.||||
RBAM_013080__ 708 TGAAACAAAGGTTGAAGAGCTGA---TAGAG---CTCGGCATTCCGATTC 751
BSNT_02224 758 CAAAGGTCTGTCATC----TGCAGGAAAAGC---TGAGTATGCCGTTTAC 800
| |..|||.||| ||||| |||| |.||.||.||.|||||
RBAM_013080__ 752 C----GCGTGTAATCTCATTGCAG---AAGCACGTCAGCATTCCTTTTAC 794
BSNT_02224 801 TTTATCAAAAAAGATGCTGTTCAAAGAGCCTATTCC------------TC 838
.||.|..|||.|.|.||||||..|.||.|||.|.|| .|
RBAM_013080__ 795 ATTGTGTAAAGAAAAGCTGTTTCACGAACCTGTACCCTCTCTGCCCGAAC 844
BSNT_02224 839 CCGGGCATGCCAAAAAGAAGGAAGCTCCTTCTGGGGAGA-------GTGT 881
||.|||..||| ||.|.||| ||.||| .||.
RBAM_013080__ 845 CCCGGCCCGCC------------GCGCTTTC--GGCAGAAGACGCGCTGA 880
BSNT_02224 882 GCTTGAAGTCAGCAGCCTTTCGTTCGCGAGAGGACAGCAGACG--ATTTT 929
||.| |||..|| ||.||.|||.|.||||| .||||||| |||||
RBAM_013080__ 881 GCGT----TCACGAG-CTGTCATTCTCAAGAGG--GGCAGACGTCATTTT 923
BSNT_02224 930 CAAAGACATCAGCTTTTCGTTGCGCG------GAGGCTCTTTAACGGCGC 973
..|.||..|.|||||||| || .|||.||..|.||.|||.
RBAM_013080__ 924 TCAGGATGTGAGCTTTTC------CGTAAAAAAAGGTTCAATCACCGCGA 967
BSNT_02224 974 TTGTTGGTCCGAATGGCACTGGAAAATCGACGCTCTTATCAGTTCT---- 1019
|||..||.||.||.||.||.||||||||.||||||.| ||||
RBAM_013080__ 968 TTGCCGGCCCTAACGGAACAGGAAAATCCACGCTCCT-----TTCTGCCG 1012
BSNT_02224 1020 -GGCCCGTCTCATGAAACCGCAAAGCGG------CAAAATCCTTCTCTAT 1062
||||...|||||....||||...|||| ||||||
RBAM_013080__ 1013 CGGCCAAGCTCATCCGTCCGCTGGGCGGAGACATCAAAAT---------- 1052
BSNT_02224 1063 GACCAGCCGCTGCAGA----------AATATAAAGAAAAAGAATTGCGTA 1102
||.|| ||||| ..|||...||||||||..||||..
RBAM_013080__ 1053 ----AGACG--GCAGACCGATTGATTCCTATTCTGAAAAAGAGCTGCGGC 1096
BSNT_02224 1103 AACGGATGGGATTTGTTTTTCAAAACCCTGAGCATCAATTCGTCACCGAT 1152
..|.|||.||||.||||||.|||||.|||||.||.||.||.|||||.|||
RBAM_013080__ 1097 GGCTGATCGGATATGTTTTCCAAAATCCTGAACACCAGTTTGTCACAGAT 1146
BSNT_02224 1153 ACGGTGTATGACGAGCTTCTGTTCGG-CCAGAAAGCA--AATGCTGAAAC 1199
.|.||...|.|.|||||..||||||| ...||||||| |..||.|.||
RBAM_013080__ 1147 TCCGTCATTCAAGAGCTGATGTTCGGTTTTGAAAGCAGCAGAGCCGCAA- 1195
BSNT_02224 1200 TGAGAAAAAAGCGCAACACCTGCTGCAGCGTTTTGGTCTTGCG----CAT 1245
||.|.|||||.|..||.|||.|....||.||.|| |.||.| ||
RBAM_013080__ 1196 --AGGAGAAAGCTCTTCAGCTGTTAACCCGATTCGG-CCTGAGACGCCA- 1241
BSNT_02224 1246 TTGGCTGATCATCATCCGTTTGCGATCAGCCAAGGGCAAAAACGGCGACT 1295
||.||.| ||.|||||||||.|..|.||||||||.||||||||.||.||
RBAM_013080__ 1242 -TGCCTCA-CAGCATCCGTTTTCTTTAAGCCAAGGACAAAAACGCCGGCT 1289
BSNT_02224 1296 GAGCGTAGCTACTATGCTCATGCATGACGTAAAGGTTTT-ATTATTAGAC 1344
.|||||.||.||.|||||.|||||..|.||.||.||||| ||..|| ||.
RBAM_013080__ 1290 CAGCGTCGCAACGATGCTTATGCACAATGTGAACGTTTTGATGCTT-GAT 1338
BSNT_02224 1345 GAACCAACCTTTGGCCAGGATGCCCGCACGGCGGCTGAATGCATGGAAAT 1394
|||||.||.||.||.|||||||||...||||||...||.||.|||.||||
RBAM_013080__ 1339 GAACCGACTTTCGGACAGGATGCCAAAACGGCGCGGGAGTGTATGCAAAT 1388
BSNT_02224 1395 ---------GATTCAGCGTATCAAGGCAGAGGGAACCGCTGTCCTTATGA 1435
|||||| ||.| ||.|||||.|||||..|.|||.
RBAM_013080__ 1389 GCTCCGTGAGATTCA-------AAAG--GAAGGAACGGCTGTTTTGATGG 1429
BSNT_02224 1436 TTACACACGATATGGAGCTAGTCTCTTCGTATGCTGACAGCG-TGCTTGT 1484
|.||||||||||||||.||.|||||....|||||.|||| || |.|||||
RBAM_013080__ 1430 TGACACACGATATGGAACTCGTCTCAGATTATGCCGACA-CGATCCTTGT 1478
BSNT_02224 1485 GCT-----TCACGATACGGG----CCTGGCCTTTGACGGATCTCC---AG 1522
||| .|||||.||.|| ||.| |||.|||| .|
RBAM_013080__ 1479 GCTCTGCGGCACGAAACTGGTATTCCGG---------GGAACTCCCGACG 1519
BSNT_02224 1523 CTCAGTTGTTTTCTCAAGAAACTGGGCTTGTCCAAAAAGCAAAGCTCA-- 1570
|| ||.||||||.|..|.||..||.|.|.| .||| |.||.||
RBAM_013080__ 1520 CT---TTATTTTCTGATAACACCAGGATCGCC----GAGC-AGGCGCATT 1561
BSNT_02224 1571 ---CCCTCCCCCTTCTATATAAATGGATGGCATATCAAGAGGAGG----- 1612
|..|.||.||.|..|||.||||||||..|.| |.|.||||||
RBAM_013080__ 1562 TGGCTTTGCCGCTGCGGTATGAATGGATGAGACA-CGACAGGAGGCGGAG 1610
BSNT_02224 1613 ---------TGCGTGATGAAGCAGCCGTTACATCTCATTAA 1644
|||| |.||.|| ||.||||.
RBAM_013080__ 1611 AAATGAACTTGCG-GCTGGAG--GCTGTTAA---------- 1638
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