Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02237 and RBAM_013120

See Amino acid alignment / Visit BSNT_02237 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:55
# Commandline: needle
#    -asequence dna-align/BSNT_02237___ykoK.1.9828.seq
#    -bsequence dna-align/RBAM_013120___ykoK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02237___ykoK-RBAM_013120___ykoK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02237___ykoK-RBAM_013120___ykoK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02237___ykoK
# 2: RBAM_013120___ykoK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1373
# Identity:    1070/1373 (77.9%)
# Similarity:  1070/1373 (77.9%)
# Gaps:          34/1373 ( 2.5%)
# Score: 4143.0
# 
#
#=======================================

BSNT_02237___      1 ATGGTTCAAAACATGACCTATGACGAACTCATTTTACGCATCATTATTTT     50
                     |||||.||||||||||||||||||||||||||.||||||||.||||||||
RBAM_013120__      1 ATGGTCCAAAACATGACCTATGACGAACTCATATTACGCATAATTATTTT     50

BSNT_02237___     51 ACTGAGAGACGGGAAAATCAGGGATTTCAGAAGTGTTATTGATGAGCTTC    100
                     |.||.|.|||||.|||||.|..||.|||.|||...|.||.||||||||||
RBAM_013120__     51 ATTGCGGGACGGAAAAATAAAAGAATTCCGAAACATGATAGATGAGCTTC    100

BSNT_02237___    101 AGCCCTATGACATGGCATTTATTTTTAAAGAAATGCCGGAAAAACACCGC    150
                     ||||||||||||||||||||.|.||||||||||||||||||||.|||||.
RBAM_013120__    101 AGCCCTATGACATGGCATTTTTGTTTAAAGAAATGCCGGAAAAGCACCGG    150

BSNT_02237___    151 GCCCGCTATTTATCTTATTTAACTGTAGACGATATCACTGATATGATCGG    200
                     |||||||||.|.||.|||.|.||.||.||.||.|||||.||.||||||||
RBAM_013120__    151 GCCCGCTATCTGTCATATATGACGGTTGATGACATCACCGACATGATCGG    200

BSNT_02237___    201 GGAGCTGGAACGCGAATTTCAGCTTGTCGTCTTAAATAAAGTCGGAAAAA    250
                     .||||||||.||.|||||||||||||.|||.||..||||||||||.||||
RBAM_013120__    201 AGAGCTGGAGCGGGAATTTCAGCTTGCCGTTTTGCATAAAGTCGGTAAAA    250

BSNT_02237___    251 CAAAAGCAACACTGGCGATGAACAAAATGGACAACGATGACCTCGCTCAA    300
                     |.|||||.||.||.||.|||||.||||||||.|||||.||.|||||...|
RBAM_013120__    251 CGAAAGCCACTCTCGCAATGAATAAAATGGATAACGACGATCTCGCCGCA    300

BSNT_02237___    301 TTGCTTGAAGAAATGGACGAAGAACTGAAGGAACAGCTTTTGTCCAGCAT    350
                     |||||.|||||.|||||.|||||||||||.|||||||||||.||||||||
RBAM_013120__    301 TTGCTGGAAGAGATGGATGAAGAACTGAAAGAACAGCTTTTATCCAGCAT    350

BSNT_02237___    351 GGAAGCGTCA-GAGTCAAAAGCTGTACAGCTCTTGATGAATTACCCGGCT    399
                     |||.|| |.| ||.|||||.||.||||||||.||||||||.||.|||...
RBAM_013120__    351 GGAGGC-TGAGGAATCAAAGGCCGTACAGCTTTTGATGAACTATCCGCAA    399

BSNT_02237___    400 GATTCAGCGGGACGCATGATGACAAACCGGTATGTGTGGATCCCTCAGCA    449
                     ||.||.|||||.||.||||||||.|||||.|.|||.|||||.||.|||||
RBAM_013120__    400 GAATCGGCGGGCCGGATGATGACGAACCGCTTTGTCTGGATTCCGCAGCA    449

BSNT_02237___    450 TTACACGGTAAAAGACGCGGTCGTCAAACTGAAAAGCTTCGCTGAAATAG    499
                     |||.||.||||||||.|||||.||.||.|||||||||||.||.|||||.|
RBAM_013120__    450 TTATACAGTAAAAGATGCGGTTGTGAAGCTGAAAAGCTTTGCAGAAATCG    499

BSNT_02237___    500 CTGAATCGATCAACTACTTATATGTTATTAATGAAAGCAAACAGCTGGTT    549
                     |.|||||.||.||.||.||.||.||.||||||||.|||||.|||||.||.
RBAM_013120__    500 CAGAATCAATAAATTATTTGTACGTGATTAATGACAGCAAGCAGCTTGTC    549

BSNT_02237___    550 GGGGTTCTTTCCTACCGCGATTTGATTCTGGGTGAACCTGAAGAAAAGGT    599
                     ||.||.||.||.|||.|.|||||.|||||.||.||.|||||.||.||.||
RBAM_013120__    550 GGAGTGCTCTCTTACAGAGATTTAATTCTCGGCGAGCCTGAGGATAAAGT    599

BSNT_02237___    600 GCAGGATTTAATGTTTACCCGCGTCATATCAGC--AGATGCTCTTCAGGA    647
                     |||||||.|.||||||||.||.|||||.||.||  .|.|||||  ||.||
RBAM_013120__    600 GCAGGATCTCATGTTTACACGTGTCATCTCGGCCGGGGTGCTC--CAAGA    647

BSNT_02237___    648 CCAGGAAGAAGTTGCCCGCCTGATTGAACGTTACGATTTTTTGGCAATAC    697
                     ||||||||||||.|||||.|||||..|.||.||.||.|||||.||.||.|
RBAM_013120__    648 CCAGGAAGAAGTCGCCCGGCTGATCCAGCGGTATGACTTTTTAGCCATTC    697

BSNT_02237___    698 CGGTTGTAGAAGAAAACAACGTGCTTGTCGGCATTGTGACAGTCGATGAT    747
                     |..|.||.||||||||..|.|||||||||||.|||||.||.|||||||||
RBAM_013120__    698 CCATCGTGGAAGAAAATCATGTGCTTGTCGGTATTGTCACTGTCGATGAT    747

BSNT_02237___    748 ATTATCGACGTCGTTATTCGTGAAGCTGATGAGGATTACGAAAAATTTGC    797
                     |||||.||||||||.|||...|||||.|||||.||||||||||||||.||
RBAM_013120__    748 ATTATTGACGTCGTGATTAAAGAAGCCGATGAAGATTACGAAAAATTCGC    797

BSNT_02237___    798 CGCTTCCGGTAAAGACATCACCTTTGACACAAAAGCTTACGTGGCGGCAT    847
                     .||.||||||||.|..||.||.|||||.||.|||||.|||||.|||||.|
RBAM_013120__    798 AGCCTCCGGTAAGGCGATTACATTTGATACGAAAGCGTACGTTGCGGCGT    847

BSNT_02237___    848 ACCGGCGCCTGCCATGGCTAATCTTACTCTTGTTTATCGGACTGATTTCA    897
                     ||||.||..||||.|||||.||..|.||.||||||||||||.|||||||.
RBAM_013120__    848 ACCGCCGTTTGCCGTGGCTCATTCTGCTTTTGTTTATCGGATTGATTTCC    897

BSNT_02237___    898 GGAAGCATTATCAGCTATTTTGAAGATGCGCTGAAGCAGGTTGTAGCGCT    947
                     |||||||||.|.|..||||||||||||.|..||.|..|.||.||.||.||
RBAM_013120__    898 GGAAGCATTCTGAATTATTTTGAAGATACATTGCAAAAAGTCGTCGCCCT    947

BSNT_02237___    948 TGCGTTTTTCATGCCGATGGTGTCAGGGATGACAGGAAATACGGGAACAC    997
                     .||||||||||||||||||.|..|.||.|.|||.||.|||||.||.||||
RBAM_013120__    948 CGCGTTTTTCATGCCGATGATTGCGGGAACGACGGGTAATACAGGCACAC    997

BSNT_02237___    998 AATCTCTTGCGGTTGTCATCAGAGGTTTGTCTAAAGAAGAAATGAACAAA   1047
                     |.||.||.||.||.|||||||||||..||.||||||||||||||||.|||
RBAM_013120__    998 AGTCACTCGCCGTCGTCATCAGAGGACTGGCTAAAGAAGAAATGAATAAA   1047

BSNT_02237___   1048 AAAACGATTGTGCGCCTGATCTTCCGGGAGTTCAGAACAAGTATTTTTAT   1097
                     |||||.||..|....|||||.|||||.||..|.|||||..||||.|..||
RBAM_013120__   1048 AAAACCATCTTTAAACTGATTTTCCGTGAACTAAGAACCGGTATCTACAT   1097

BSNT_02237___   1098 CGG-AGCGGTTTGTTCTGTGC-----TGATTGCGATTGTCTCCATCATAT   1141
                     ||| |.||      |||||||     .||||.||||||||.|.|.|.|.|
RBAM_013120__   1098 CGGCATCG------TCTGTGCGATCGCGATTACGATTGTCGCAACCGTCT   1141

BSNT_02237___   1142 GGCAGGGGAATG------CGCTTTTGGGATTTGTTGTCGCCTCTTCGCTG   1185
                     ||||   |||.|      |||   |.||.|||||.||||..||.||||||
RBAM_013120__   1142 GGCA---GAAAGACTTAACGC---TCGGTTTTGTCGTCGGTTCATCGCTG   1185

BSNT_02237___   1186 TTCTT--AACCTTAATCATCGGCACGATGTCAGGAACGATTATCCCTATT   1233
                       |||  |||.||.||.|||||.||||||.|.||||||||..||||||||
RBAM_013120__   1186 --CTTGCAACGTTGATTATCGGTACGATGGCCGGAACGATCGTCCCTATT   1233

BSNT_02237___   1234 ATTTTGCACAAACTGAAAGTGGACCCGGCGATTGCTTCTGGACCGCTGAT   1283
                     |||.|.||.||||||||..|.||||||||||||||.||.|||||||||||
RBAM_013120__   1234 ATTCTTCATAAACTGAACATTGACCCGGCGATTGCATCAGGACCGCTGAT   1283

BSNT_02237___   1284 TACAACGTTAAACGATATTTTATCTTTATTAATCTACTTTGGCATTGCCA   1333
                     |||.|||.|.|||||||||||.||.||||||||.||.||.||||||||.|
RBAM_013120__   1284 TACGACGCTGAACGATATTTTGTCCTTATTAATTTATTTCGGCATTGCAA   1333

BSNT_02237___   1334 CTGCATTCATTCACTCATTATAA   1356
                     |||||||..||||..|.||||||
RBAM_013120__   1334 CTGCATTTCTTCATGCTTTATAA   1356


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