Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02270 and RBAM_013270

See Amino acid alignment / Visit BSNT_02270 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_02270___ykrM.1.9828.seq
#    -bsequence dna-align/RBAM_013270___ykrM.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02270___ykrM-RBAM_013270___ykrM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02270___ykrM-RBAM_013270___ykrM.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02270___ykrM
# 2: RBAM_013270___ykrM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1368
# Identity:    1054/1368 (77.0%)
# Similarity:  1054/1368 (77.0%)
# Gaps:          33/1368 ( 2.4%)
# Score: 3997.0
# 
#
#=======================================

BSNT_02270___      1 ATGAGATTAAAGTTTGGA--AAATTGATACAGGCCTTGTCACCGGCCCAG     48
                     ||||.||||||..|  ||  |||||.||||||..||||||.||.||.|||
RBAM_013270__      1 ATGAAATTAAAACT--GAAGAAATTCATACAGATCTTGTCGCCTGCACAG     48

BSNT_02270___     49 CTGATCGCATTATATTATTTTCTTGCAGTTACTGTGGCCGTTATATTGCT     98
                     |||||.||||||||||||||||||||.||.||.|||||..||||.|||||
RBAM_013270__     49 CTGATTGCATTATATTATTTTCTTGCTGTGACGGTGGCATTTATTTTGCT     98

BSNT_02270___     99 GAGTTTGCCGGCGGCCCATAAACCGGGGGCGGATTGGACGTTTATTGATG    148
                     .|||.|||||||.|||||.||||..|||||....|||.|||||||.||.|
RBAM_013270__     99 AAGTCTGCCGGCCGCCCACAAACAAGGGGCCAGCTGGTCGTTTATAGACG    148

BSNT_02270___    149 CGCTTTTTACAGCTGTCAGTTCAGTCAGCGTAACGGGGCTGACGGTAGTT    198
                     ||||.|||||.||||||||.||||||||.||.||.||..|.|||||.||.
RBAM_013270__    149 CGCTGTTTACGGCTGTCAGCTCAGTCAGTGTCACCGGTTTAACGGTCGTC    198

BSNT_02270___    199 GATACAGCTGATACATTCAGCACAATAGGGATTTTTATATTAGCATTTGT    248
                     .|.||.|||||||||||||||||....||||||.|.||.||.||.||.||
RBAM_013270__    199 AACACGGCTGATACATTCAGCACGGCCGGGATTGTCATTTTGGCTTTCGT    248

BSNT_02270___    249 TCTGCAATTTGGCGGAATCGGAATTATGACGCTCGGAACGTTCATTTGGC    298
                     .||.|||||.|||||||||||.||.||||||||||||||.|||.|.||||
RBAM_013270__    249 GCTTCAATTCGGCGGAATCGGCATCATGACGCTCGGAACATTCGTCTGGC    298

BSNT_02270___    299 TGATCATGGGAAAACGAATCGGGCTGAAAGAACGGAAGCTGATTATGGTT    348
                     |.||.|||||.|||||.|||||.|||...|||||||||||.||.|||||.
RBAM_013270__    299 TCATTATGGGCAAACGGATCGGTCTGCGGGAACGGAAGCTCATCATGGTG    348

BSNT_02270___    349 GATCAAAACCAATCCCAGTTTTCAGGAATTGTCAATCTGATGAAGCAGGT    398
                     |||||.||.|||||.||||||||.||.||.|||||.|||||||||||.||
RBAM_013270__    349 GATCAGAATCAATCGCAGTTTTCCGGTATCGTCAACCTGATGAAGCAAGT    398

BSNT_02270___    399 ACTGTTTCTGATCTTGTGGATTGAATTTTTTGGCGGGCTGATTCTCGGCA    448
                     .||||||.||||.||.|..||.||.|||||.|||||..|.||..|.||.|
RBAM_013270__    399 GCTGTTTTTGATTTTATTAATCGAGTTTTTAGGCGGCATCATCTTAGGAA    448

BSNT_02270___    449 CATATTTCTTAACCTACTATGACTCCTATCAGGAAGCTTATTTACACGGA    498
                     |||||||.|||||.||.|||||.||.|.|.|..|.||.||.||.||||||
RBAM_013270__    449 CATATTTTTTAACGTATTATGATTCGTTTGAACAGGCGTACTTGCACGGA    498

BSNT_02270___    499 TTTTTTGCCAGTATCAGTGCAACGACAAACGGCGGATTTGATATTACCGG    548
                     ||.|||||.||..||||.||.||||||||||||||.|||||||||||.||
RBAM_013270__    499 TTCTTTGCGAGCGTCAGCGCCACGACAAACGGCGGTTTTGATATTACGGG    548

BSNT_02270___    549 TAATTCGATGATTCCATTTCGCCACGATTACTTTGTGCAGTTTATTACAA    598
                     .|||||..|..|.||.||..|.||.||.||.||.||||||||||||||.|
RBAM_013270__    549 AAATTCACTCGTCCCGTTCAGACATGACTATTTCGTGCAGTTTATTACGA    598

BSNT_02270___    599 TGCTTTTAATTATATTTGGAGCGATTGGATTTCCCGTGCTTGTTGAAGTA    648
                     |||||.|.|||||.||.||.|||||.||.|||||.|||||.||.||||||
RBAM_013270__    599 TGCTTCTGATTATTTTCGGTGCGATCGGTTTTCCGGTGCTCGTAGAAGTA    648

BSNT_02270___    649 AAGGATTTCCTGTTTTCAAAGCATCGGCGTTATCCATTTACGCTTTTTAC    698
                     |||||.||..||||||||||.||.||..|.||..||||.|||||.|||||
RBAM_013270__    649 AAGGACTTTTTGTTTTCAAAACAGCGCAGATACTCATTCACGCTGTTTAC    698

BSNT_02270___    699 AAAGATCACGACGATTACGTTCG----GCTCACTTGTCTTGTTTGGAGCC    744
                     .||.||.|||||..|||||||||    ||||    ||.|||||.||||||
RBAM_013270__    699 GAAAATTACGACCGTTACGTTCGGAATGCTC----GTTTTGTTCGGAGCC    744

BSNT_02270___    745 ATTGGCATCTTTGCCCTGGAAGCAAACCATGCGTTC-----GCGGGAAAA    789
                     .|.|||||.|..||.||.|||||||.|||||   ||     | |||||||
RBAM_013270__    745 GTGGGCATTTACGCGCTTGAAGCAAGCCATG---TCATGAAG-GGGAAAA    790

BSNT_02270___    790 TCATGGCATGATATTTTGTTTTTGTCCCTGTTTCAATCAACGGCAACCCG    839
                     .| |||||||||.||||.|||||.|..||.|||||||||||.||.||.||
RBAM_013270__    791 GC-TGGCATGATGTTTTATTTTTATGTCTCTTTCAATCAACCGCTACGCG    839

BSNT_02270___    840 AAGCGGGGGACTGGCAACAATCGATATCAGCCAATTATCAGATTCCACAC    889
                     ||||||.||.||.||.|||||.|||||||||||..|.||.|...|.|||.
RBAM_013270__    840 AAGCGGCGGGCTTGCGACAATTGATATCAGCCAGCTGTCGGCGCCGACAT    889

BSNT_02270___    890 TCTTTTTTATTTGTGCGCTGATGTTTATCGGAGCGTCGCCAAGCTCAGTC    939
                     |.|||||.|||||.||.||.|||||.|||||.||.||.||.|||||.|||
RBAM_013270__    890 TATTTTTCATTTGCGCCCTCATGTTCATCGGCGCATCACCGAGCTCGGTC    939

BSNT_02270___    940 GGGGGAGGCATACGGACAACGACTTTTGCTTTGAACCTTCTTGCGCTGTT    989
                     ||.||.||.||.||.||.|||||.|||||..|.|||||.|||||.|||||
RBAM_013270__    940 GGCGGCGGAATCCGTACGACGACGTTTGCGCTTAACCTGCTTGCCCTGTT    989

BSNT_02270___    990 TCATTTTGCCCGCGGCAATAAGGCCGTAAAGGTATTCAAACGGGAGCTTC   1039
                     ||||||||||||.||.|||||.||.||.|||||.||.|||||.|||||||
RBAM_013270__    990 TCATTTTGCCCGGGGGAATAAAGCGGTCAAGGTCTTTAAACGCGAGCTTC   1039

BSNT_02270___   1040 ACCCTGCTGACTTGATGAAGTCGCTTGTTGTCACGATGATGGCGATCCTG   1089
                     |||..|||||..|.|||||||||||.||.||.||||||||||||||.|||
RBAM_013270__   1040 ACCAGGCTGATGTCATGAAGTCGCTGGTCGTTACGATGATGGCGATTCTG   1089

BSNT_02270___   1090 CTCGTTTTTGGCGCGACACTCATTCTGACCATTAC--AGAAAAA-CATTC   1136
                     |||||.||.||..||||.||.||||||.||.|.||  ||||||| ||..|
RBAM_013270__   1090 CTCGTGTTCGGATCGACGCTGATTCTGTCCGTGACCGAGAAAAATCAGAC   1139

BSNT_02270___   1137 CCTGCT-GGA--GCTTTTGTTTGAAGTGTGCTCGGCATTCGGTACAACCG   1183
                     .||.|| |||  ||||   |||||||||||.||.||||||||.||.||||
RBAM_013270__   1140 GCTCCTCGGACTGCTT---TTTGAAGTGTGTTCCGCATTCGGAACGACCG   1186

BSNT_02270___   1184 GCCTGTCGCTTGGAATTACGGCAGATTTGAGCAGTGTTGGAAAATGCGTC   1233
                     |||||||||||||.|||||..|..||||.|||....|.||||||||.|||
RBAM_013270__   1187 GCCTGTCGCTTGGGATTACTCCGCATTTAAGCGACATCGGAAAATGTGTC   1236

BSNT_02270___   1234 ATTATGATTGTCATGTTTATCGGGCGAATCGGCATCCTGACCTTCCTGTA   1283
                     ||.||||||||||||||||||||.||.||||||||..||||.|||||.||
RBAM_013270__   1237 ATCATGATTGTCATGTTTATCGGCCGGATCGGCATTTTGACGTTCCTTTA   1286

BSNT_02270___   1284 TCTGATCGGAAGAAAGGAAATTGAAGCGAACTATCACTATCCGAAAGAAA   1333
                     |.|||||||..||||.|||||.|||||.||.|||||.||||||||.||||
RBAM_013270__   1287 TTTGATCGGCCGAAAAGAAATCGAAGCAAATTATCATTATCCGAAGGAAA   1336

BSNT_02270___   1334 GAGTGATTATCGGATAG-   1350
                     ||.|||||||.||.| | 
RBAM_013270__   1337 GAATGATTATTGGCT-GA   1353


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