Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02277 and RBAM_013310

See Amino acid alignment / Visit BSNT_02277 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_02277___kinE.1.9828.seq
#    -bsequence dna-align/RBAM_013310___kinE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02277___kinE-RBAM_013310___kinE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02277___kinE-RBAM_013310___kinE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02277___kinE
# 2: RBAM_013310___kinE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2252
# Identity:    1674/2252 (74.3%)
# Similarity:  1674/2252 (74.3%)
# Gaps:          67/2252 ( 3.0%)
# Score: 6036.0
# 
#
#=======================================

BSNT_02277___      1 ATG---GAAACTCTTGGTGTCCAGACAAACTCGGAGCTGCGAGAGGAACT     47
                     |||   ||||||||.|.|.|.||.|||||...|..||||..||||.|.||
RBAM_013310__      1 ATGGCTGAAACTCTGGATTTGCAAACAAAAGAGTCGCTGAAAGAGCAGCT     50

BSNT_02277___     48 GAATCGCCTCAAAGAAGAAAACGCGCGACTGAAAAAGGAATTGAATCAGC     97
                     |||.||..|.|||||.|||||.|..||.|||||.|..||.|||||.|.|.
RBAM_013310__     51 GAAGCGAATGAAAGAGGAAAATGACCGCCTGAAGAGTGATTTGAACCGGT    100

BSNT_02277___     98 ATCAAGTGATTGTCAACAATACGCTCGATGCTATTTTTATTTGTGATAAC    147
                     ||||.||||||.|.||.||.|||||.|||||.||||||||.||...|||.
RBAM_013310__    101 ATCACGTGATTATGAATAACACGCTTGATGCCATTTTTATATGCCGTAAG    150

BSNT_02277___    148 GAAATGCGGATTGTTCAGGCAAATGAAGCAACAGAAAGGATGCTTCAAGT    197
                     ||||||...||.||.|||||.||.||.||..|||...|||||.|.||..|
RBAM_013310__    151 GAAATGAAAATCGTCCAGGCGAACGAGGCTGCAGCCCGGATGATGCAGAT    200

BSNT_02277___    198 TGACTCGGA-AG----ATTTGAAAAAGCGTTCTGTTTTGGATTTTTTGTT    242
                     |||..|.|| ||    |||     ||.||.||.||..||||||||||.|.
RBAM_013310__    201 TGAGGCAGAGAGCCTCATT-----AACCGCTCAGTCCTGGATTTTTTATA    245

BSNT_02277___    243 TTCAATCCCAAAGGATGAACTGAATCTTTCCGTAAAGAAGTTTTTTAAAA    292
                     |||..|.||..||||.|||||||||....||||.||.||||||||.||||
RBAM_013310__    246 TTCCGTGCCTCAGGAAGAACTGAATAAGGCCGTGAAAAAGTTTTTAAAAA    295

BSNT_02277___    293 AAGGCTTTCTGTGGAAGGAGGTTCCGATCAGGCTTGATTGCGGGGCAACA    342
                     |||||..|||||||||.|||||.|||||.|.||||||..||||.||.||.
RBAM_013310__    296 AAGGCCATCTGTGGAAAGAGGTGCCGATTAAGCTTGACAGCGGCGCGACG    345

BSNT_02277___    343 AAATACATAGAGTTTCTGGCCAAAAGA-GGCATTGGTGAGGATTTCTTTT    391
                     ||||||||.||.||.||.||| |.||| ||.|||||.|||||||..||||
RBAM_013310__    346 AAATACATTGAATTCCTCGCC-AGAGACGGAATTGGGGAGGATTATTTTT    394

BSNT_02277___    392 TTGTTGTCATGAGGGACATATCTTCTAAGAAGATTCTGGAGCGGGAATTC    441
                     ||||.||.||||||||.||.||.|||||.||.||..|.|||||.||||||
RBAM_013310__    395 TTGTGGTGATGAGGGATATCTCCTCTAAAAAAATATTAGAGCGCGAATTC    444

BSNT_02277___    442 TCTATGAATGAACAGCTTTTTAAGGACTTGTTTGACAGAGCAGTTGACGG    491
                     ||.|||||.||.|||||.|||||.||.|||||||||||.||.||.|||||
RBAM_013310__    445 TCCATGAACGAGCAGCTGTTTAAAGATTTGTTTGACAGGGCTGTCGACGG    494

BSNT_02277___    492 AATCGTCCTGTTTGATAAAGATGGCGGTTTTATTGATGCCAATTTGTCCT    541
                     .|||||.|||||||||||.||.|||||.|||||||||||.||..|.||.|
RBAM_013310__    495 CATCGTGCTGTTTGATAAGGACGGCGGGTTTATTGATGCGAACCTCTCTT    544

BSNT_02277___    542 TTTGTAAAAGCTTTGAAATCAATCATAATGAGCTGTCTCATTTATC----    587
                     ||||.|||||||||||.|||...||.|||||..||||.|||.|.||    
RBAM_013310__    545 TTTGCAAAAGCTTTGAGATCGGCCAGAATGAATTGTCCCATCTGTCGCTC    594

BSNT_02277___    588 -----TTTGTA-TGAGTTCATAGACAGCGGCTCACGAAAAG-ATTTCGAC    630
                          ||| || .||   |..|||.|       ||.||||| ||.| ||.
RBAM_013310__    595 CGCCATTT-TACCGA---CGGAGAAA-------ACAAAAAGCATCT-GAA    632

BSNT_02277___    631 A-ATATCTGGAAGGCGCTCAACCGCAAGGGAAAAGCGAAGGGGGAGCTGC    679
                     | |.||||||.|..|.|||..|.|.||.|||||.||.||.||.||.||||
RBAM_013310__    633 AGAAATCTGGGAAACCCTCCGCAGAAAAGGAAACGCCAAAGGAGAACTGC    682

BSNT_02277___    680 CTGTCAAGCTTCGTTCAGGAGTTCAAAAACTATTTGAATTCACGATTACA    729
                     |.||.||||||||.||.||.|...|.||.||.||||||||.||||||||.
RBAM_013310__    683 CCGTTAAGCTTCGGTCGGGCGAAGAGAAGCTGTTTGAATTTACGATTACG    732

BSNT_02277___    730 TCAAACATCATCAGCGGTTTTTATATGTCCATTATGAGGGATATCACAGA    779
                     ||.|||.|.||||||||.||.||.|||||||||||||||||.||.|||||
RBAM_013310__    733 TCCAACGTAATCAGCGGGTTCTACATGTCCATTATGAGGGACATAACAGA    782

BSNT_02277___    780 GAAGCGGTCTATGGAGCTGCAGCTCTTTAAAAGTGAGGAGCGCTTCAGAG    829
                     |||.||||..|||||..||.|.|||||||||||.||.|||||.|||.|.|
RBAM_013310__    783 GAAACGGTTGATGGAATTGAAACTCTTTAAAAGCGAAGAGCGATTCCGCG    832

BSNT_02277___    830 AAATCTTTGAAAATGCAATGGACGCCATCATCATCTGGTCGAATGACGGA    879
                     ||||.||||||||.||.||||||||.||..||||.|||||..||||||||
RBAM_013310__    833 AAATTTTTGAAAACGCCATGGACGCGATTGTCATTTGGTCTGATGACGGA    882

BSNT_02277___    880 AGAATCGTAAAAGCGAATCAATCAGCCTGTAAAATTTTTGAGCTGCCGAT    929
                     |..||.|..|||||.||..||||.||.||....|||||.||.||||||||
RBAM_013310__    883 AAGATTGCCAAAGCAAACGAATCGGCGTGCCGCATTTTCGAACTGCCGAT    932

BSNT_02277___    930 GAATTTGCTGTTGAAAAGAAAGCTGTGTGATTTTCTCGTTGACTCGCAGC    979
                     |.||...|||.||.|.|..||..|.|||...|||.|||||||..|||||.
RBAM_013310__    933 GGATAAACTGGTGGAGACGAATTTATGTACGTTTATCGTTGATCCGCAGA    982

BSNT_02277___    980 AGAAATACAGCATAAC----GAAGAGGAAATACGCAAAATACGGAGAGAT   1025
                     |.|||||||    |||    .||||..|||||.|.|||||||||.||.||
RBAM_013310__    983 AAAAATACA----AACAGATTAAGAAAAAATATGAAAAATACGGGGAAAT   1028

BSNT_02277___   1026 CAGAGAAGAGCTGCTGTTTCAAATGGGGAACGGGCAATTCAAAGAGCTTG   1075
                     |.|.|||||..||||||||||.||||..|||||.|||||.||||||||.|
RBAM_013310__   1029 CCGTGAAGAAATGCTGTTTCAGATGGCAAACGGCCAATTTAAAGAGCTGG   1078

BSNT_02277___   1076 AATTTACTTCAAAACGGACAATCCTTGAAAATCAGCATTTGACGATCTTA   1125
                     ||||.||.||||||||.||.||.||||||..|||||||||.||.||.|||
RBAM_013310__   1079 AATTCACATCAAAACGAACCATACTTGAAGGTCAGCATTTAACCATTTTA   1128

BSNT_02277___   1126 AGAAATGTAAGCGACAGAAAGCGGATGGAAAAGGAGCTTCGGGAAAGCGA   1175
                     ||||||||.|||||..|.||||||||||||||.||..|.|||||||||||
RBAM_013310__   1129 AGAAATGTCAGCGATCGTAAGCGGATGGAAAAAGAATTGCGGGAAAGCGA   1178

BSNT_02277___   1176 GCTGAAATTCAGAAAAGTGTTCAACGGCTCAATGGACGGCAATGTGTTGT   1225
                     ||||||||||||||||||.|||||||||||||||||.|||||.||.||.|
RBAM_013310__   1179 GCTGAAATTCAGAAAAGTATTCAACGGCTCAATGGATGGCAAGGTCTTAT   1228

BSNT_02277___   1226 TCGACAATCAATACAGGATCATTGACGCCAACCCGTTAGCAAGCCATATT   1275
                     |.|||||.||||.|.|.||.||||||||.||.||..|.|||||||.|||.
RBAM_013310__   1229 TTGACAACCAATTCCGCATTATTGACGCGAATCCTCTCGCAAGCCGTATA   1278

BSNT_02277___   1276 TTGGGCCTGTCACATGAAGAGATCAAACAGCACAGCCTGTT--AGATATT   1323
                     .|.||..||.|..||||.|||.|.|.|..|.|||  |.|||  .||||||
RBAM_013310__   1279 CTCGGTATGCCGGATGAGGAGCTGAGAGCGTACA--CCGTTCCGGATATT   1326

BSNT_02277___   1324 ATTTCTGCTTA--TGAAATAGAAAA-TCTGGCATCACCGGCAAGGCAGAT   1370
                     .|||||  |||  |||.||.||||| .|.||..| .||.||.||..||||
RBAM_013310__   1327 CTTTCT--TTATTTGATATTGAAAACGCGGGTGT-TCCCGCCAGAAAGAT   1373

BSNT_02277___   1371 TAATTTTGATGAAATGGACAACGAAATTCCATTTTTGCTGAGCAGCGGTG   1420
                     |.||||.||.|.||||||.||.|||||.||.||..||.|.||||||.|.|
RBAM_013310__   1374 TGATTTAGAAGGAATGGATAATGAAATCCCCTTCCTGTTAAGCAGCAGCG   1423

BSNT_02277___   1421 ATAACAGAAAACTCGAATTCTCATTTAAACGGAATATTATTCAAAATATG   1470
                     |.|.|.|.|||||.||||||||.||.|||.|.|||||.||||||||||||
RBAM_013310__   1424 ACAGCCGCAAACTGGAATTCTCCTTCAAAAGAAATATCATTCAAAATATG   1473

BSNT_02277___   1471 AACTTGGCTATCTTTAAAGACGTAACAGAGCGAAAAGAATTGGAGGAACG   1520
                     ||..||||.|||||||||||.||.||||||...|||||..|.||.||..|
RBAM_013310__   1474 AATCTGGCCATCTTTAAAGATGTCACAGAGGCCAAAGAGCTTGAAGAGAG   1523

BSNT_02277___   1521 CCTGCGCAAATCAGATACCCTTCATGTTGTCGGCGAACTCGCAGCCGGCA   1570
                     .|||||.|||||.||.||.|||||||||||.||.||.||.||.||.||||
RBAM_013310__   1524 GCTGCGGAAATCCGACACTCTTCATGTTGTAGGGGAGCTGGCGGCGGGCA   1573

BSNT_02277___   1571 TTGCTCATGAAATCAGAAATCCGATGACTGCTCTTAAAGGCTTCATTCAG   1620
                     |.|||||.|||||||||||.||||||||.||.||.|||||.|||||||||
RBAM_013310__   1574 TCGCTCACGAAATCAGAAACCCGATGACGGCGCTGAAAGGGTTCATTCAG   1623

BSNT_02277___   1621 CTTCTGAAAGGGAGTGTCGAGGGAGACTACGCCCTTTACTTCAACGTGAT   1670
                     |||||..||||.||..|.||.||.||.||..|.||.|||||.|||||.||
RBAM_013310__   1624 CTTCTTCAAGGAAGCATTGAAGGCGAATATTCTCTGTACTTTAACGTCAT   1673

BSNT_02277___   1671 CACCTCAGAACTAAAGCGCATCGAATCCATCATCACCGAATTCTTGATTT   1720
                     .|||||||||.||||.||||||||.||.||||||||.|||||.||.||||
RBAM_013310__   1674 TACCTCAGAATTAAAACGCATCGAGTCTATCATCACTGAATTTTTAATTT   1723

BSNT_02277___   1721 TAGCCAAGCCCCAGGCCATTATGTATGAGGAAAAACATGTTACCCAAATT   1770
                     ||||.||.||||||||.||..|.|||||.||||||.|.||.||.||.|||
RBAM_013310__   1724 TAGCGAAACCCCAGGCGATATTATATGAAGAAAAAGACGTGACGCAGATT   1773

BSNT_02277___   1771 ATGAGGGACACGATAGACCTTCTAAATGCGCAAGCCAATCTCAGCAATGT   1820
                     ||||..||||||...||.|||.|.|||||.||.||||||||...||||||
RBAM_013310__   1774 ATGAAAGACACGGCTGATCTTTTGAATGCCCAGGCCAATCTTGTCAATGT   1823

BSNT_02277___   1821 ACAAATGCAACTTGATTTAATTGAC----GACATTCCCCCGATTTACTGT   1866
                     .||.||.||.| |||   |..||||    .||||.||.||||||||||||
RBAM_013310__   1824 GCAGATCCATC-TGA---ACCTGACCGGAAACATCCCGCCGATTTACTGT   1869

BSNT_02277___   1867 GAACCGAATCAGCTGAAACAGGTTTTTATCAATATATTAAAAAACGCCAT   1916
                     |||||||||||..|.||||||||.|||||||||||.||||||||||||||
RBAM_013310__   1870 GAACCGAATCAATTAAAACAGGTGTTTATCAATATTTTAAAAAACGCCAT   1919

BSNT_02277___   1917 CGAAGTGATGCCTGACGGCGGAAATATTTTTGTAACGATAAAGGCATTGG   1966
                     .|||||.|||||.|.||||||.|||||.|..||.||.||..||.|.|..|
RBAM_013310__   1920 TGAAGTCATGCCGGGCGGCGGCAATATCTACGTGACCATTCAGTCTTCTG   1969

BSNT_02277___   1967 ATCAAGATCATGTTCTTATCTCCTTAAAAGACGAGGGAATCGGAATGACA   2016
                     |||||||.||..||.|.||.||..|..||||.||.||||..||.||..|.
RBAM_013310__   1970 ATCAAGACCACATTTTGATTTCTATTCAAGATGAAGGAACAGGCATTTCC   2019

BSNT_02277___   2017 GAAGATAAATTAAAGCGCCTTGGTGAACCGTTTTATACGACAAAGGAACG   2066
                     |||||.||||||||.||.||.||||||||.|||||.||||||||.||..|
RBAM_013310__   2020 GAAGACAAATTAAAACGTCTGGGTGAACCATTTTACACGACAAAAGACAG   2069

BSNT_02277___   2067 GGGAACTGGACTTGGGCTTATGGTAAGCTATAAAATTATTGAAGAACATC   2116
                     ||||||.||.||.||.||.|||||.|||||||||||.||.||||||||||
RBAM_013310__   2070 GGGAACGGGTCTCGGTCTCATGGTCAGCTATAAAATCATCGAAGAACATC   2119

BSNT_02277___   2117 AAGG-CGAAATTATGGTAGAAAGTGAAGAAGGGAAGGGCACCGTTTTCCA   2165
                     |.|| ||.|.|.|| ||.|||||||||||||||||||||||||||||.||
RBAM_013310__   2120 AGGGACGCATTCAT-GTGGAAAGTGAAGAAGGGAAGGGCACCGTTTTTCA   2168

BSNT_02277___   2166 TATTACGCTTCCTGTCAGACAGAATGCTGAAGAAAGAAGGAATGATGAAT   2215
                     |.|.||||||||..||.|.||||||.|.|||||||||||||..|..||||
RBAM_013310__   2169 TTTGACGCTTCCGATCCGGCAGAATACCGAAGAAAGAAGGAGCGGGGAAT   2218

BSNT_02277___   2216 GA   2217
                     ||
RBAM_013310__   2219 GA   2220


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