Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02287 and RBAM_013370

See Amino acid alignment / Visit BSNT_02287 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_02287___mtnW.1.9828.seq
#    -bsequence dna-align/RBAM_013370___mtnW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02287___mtnW-RBAM_013370___mtnW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02287___mtnW-RBAM_013370___mtnW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02287___mtnW
# 2: RBAM_013370___mtnW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1267
# Identity:     958/1267 (75.6%)
# Similarity:   958/1267 (75.6%)
# Gaps:          47/1267 ( 3.7%)
# Score: 3538.5
# 
#
#=======================================

BSNT_02287___      1 AT---GGATGAAAATGAAAGGAGCTCTGGCATGAGTGAGTTATTAGCGAC     47
                      |   |.|.||||  ||.|||.|.||..|||||||.||..||||.||.||
RBAM_013370__      1 -TTGCGAAAGAAA--GAGAGGCGTTCACGCATGAGCGAAGTATTGGCAAC     47

BSNT_02287___     48 ATATCTCCTGACCGA---ACCGGGAGCCGATACAGAGAAGAAA----GCA     90
                     ||||||.|||||.||   |.|||        ||||.||  |||    ||.
RBAM_013370__     48 ATATCTTCTGACAGACACAACGG--------ACAGTGA--AAAGCGGGCG     87

BSNT_02287___     91 GAACAAATCGCAACAGGATTGACAGTAGGCTCCTGGACTGATCTGCCCCT    140
                     |||||.||.||..|.||..||||.|||||||||||||||||.||||||||
RBAM_013370__     88 GAACAGATTGCGGCGGGGCTGACGGTAGGCTCCTGGACTGACCTGCCCCT    137

BSNT_02287___    141 TGTAAAACAGGAGCAAATGCA-AAAGCACAAGGGGCGGGTGATAAAAGTT    189
                     .||.||.|||||.||..| || |||.||.||.||||||||..||||||||
RBAM_013370__    138 GGTGAAGCAGGAACAGCT-CAGAAAACATAAAGGGCGGGTCGTAAAAGTT    186

BSNT_02287___    190 GAGGAGAGAGAGGGAACTGCTGCATCAGAAAA------ACAAGCGGTCAT    233
                     |||||||.|||.||||      |.||||||||      ||||.|.|||||
RBAM_013370__    187 GAGGAGAAAGAAGGAA------CCTCAGAAAACGAAACACAATCCGTCAT    230

BSNT_02287___    234 CACAATTGCCTATCCTGAAATCAATTTCTCTCAG-GATATTCCGGCTTTG    282
                     |||.||.||||||||.|||.|.||.||.|| .|| |||||||||||..|.
RBAM_013370__    231 CACCATCGCCTATCCCGAAGTGAACTTTTC-AAGAGATATTCCGGCCGTC    279

BSNT_02287___    283 CTGACAACAGTGTTTGGCAAGCTGTCCCTGGACGGAAAAATCAAATTAAT    332
                     |||||.||.||.||.||.||||||||.||||||||||||||.|||||.|.
RBAM_013370__    280 CTGACGACGGTATTCGGAAAGCTGTCACTGGACGGAAAAATAAAATTGAC    329

BSNT_02287___    333 CGATCTTCACTTCTCTGAAGTATTTAAGCGTGCACTGCCGGGACCGAAGT    382
                     .||||||.|.||.||.||||..|||||.|||.|.||.||.||.|||||.|
RBAM_013370__    330 TGATCTTGAATTTTCCGAAGGGTTTAAACGTTCCCTTCCCGGGCCGAAAT    379

BSNT_02287___    383 TTGGCGTATACGGCATCCGGAAGCTGCTGGGAGAGTTTGAGAGACCGCTG    432
                     |.||..|||||||||||||.||.||||||||.||.|||||.||||||||.
RBAM_013370__    380 TCGGTATATACGGCATCCGCAAACTGCTGGGCGAATTTGAAAGACCGCTT    429

BSNT_02287___    433 TTAATGAGCATATTTAAAGGCGTAATCGGAAGGGACCTGAGTGATATTAA    482
                     .|.||||||||||||||||||||.||||||.||||.||....||.|||||
RBAM_013370__    430 CTGATGAGCATATTTAAAGGCGTGATCGGACGGGATCTTGCCGACATTAA    479

BSNT_02287___    483 AGAACAGCTCCGGCAGCAGGCGCTTGGCGGAGTTGA-CTTGATTAAAGAC    531
                     ||||||||||.|.|||||||||||.|||||.||.|| ||| ||||||||.
RBAM_013370__    480 AGAACAGCTCAGACAGCAGGCGCTCGGCGGCGTGGATCTT-ATTAAAGAT    528

BSNT_02287___    532 GATGAAATTTTCTTTGAGACTGGTCTAGCGCCTTTTGAAACAAGAATTGC    581
                     ||.||||||||||||||.|.||..||.||.||.||||||||..|.|||..
RBAM_013370__    529 GACGAAATTTTCTTTGAAAATGAACTGGCTCCGTTTGAAACCCGCATTAT    578

BSNT_02287___    582 AGAAGGAAAGCAAATATTGAAAGAAACGTATGAACAAACCGGACATAAAA    631
                     .||||||||.|||.|..||||.|||||....||..||||.||.|||||||
RBAM_013370__    579 CGAAGGAAAACAAGTCCTGAAGGAAACCCGGGAGGAAACGGGGCATAAAA    628

BSNT_02287___    632 CGCTGTATGCGGTGAATTTGACCGGACGTACGGCTGATCTGAAAGACAAA    681
                     ||||||||||.||.||..|.||.|||.|.||.|||||..||...||.|||
RBAM_013370__    629 CGCTGTATGCCGTAAACCTTACGGGAAGGACCGCTGAATTGCGGGATAAA    678

BSNT_02287___    682 GCGAGACGCGCCGCCGAGTTGGGAGCGGATGCGCTTTTGTTTAATGTCTT    731
                     |||||.|||||.||.||..|.||.|||||.||||||||.||.|||||.||
RBAM_013370__    679 GCGAGGCGCGCGGCAGAACTCGGGGCGGACGCGCTTTTATTGAATGTGTT    728

BSNT_02287___    732 CGCTTACGGCTTGGACGTTATGCAAGGCCTTGCGGAAGATCCTGAAATCC    781
                     |||||||||.||.||.||.|||||..|||||||.||.|||...|||||||
RBAM_013370__    729 CGCTTACGGTTTAGATGTGATGCAGAGCCTTGCTGAGGATAAGGAAATCC    778

BSNT_02287___    782 CAGTTCCGATTATGGCGCATCCAGCAGTGAGCGGAGCGTTTACGTCTTCT    831
                     |..|||||||.|||||||||||.|||||.|||||.|||||.||.||.|||
RBAM_013370__    779 CGCTTCCGATCATGGCGCATCCGGCAGTCAGCGGCGCGTTCACATCATCT    828

BSNT_02287___    832 CCGTTTTACGGTTTTTCTCACGCTCTTTTACTCGGAAAATTAAACCGATA    881
                     ||..|||||||.||.||.||.||.|||||.|||||.||..|.|||||.||
RBAM_013370__    829 CCCGTTTACGGCTTGTCGCATGCGCTTTTGCTCGGCAAGCTGAACCGCTA    878

BSNT_02287___    882 TTGCGGTGCTGACTTCAGCCTCTTTCCGTCTCCATATGGTTCGGTTGCGC    931
                     ||||||.|||||.|||||..|.||||||||.||.||.||.||.|||||.|
RBAM_013370__    879 TTGCGGCGCTGATTTCAGTTTATTTCCGTCACCTTACGGATCCGTTGCTC    928

BSNT_02287___    932 TTCCAAGAGCAGAT--GCACTGGCGATTCATGAAGAATGTGTGAGAGAGG    979
                     ||||.| ||.|| |  ||.||.||.||.|||||.||||||||.|.|||.|
RBAM_013370__    929 TTCCGA-AGGAG-TCCGCGCTTGCAATCCATGATGAATGTGTAAAAGACG    976

BSNT_02287___    980 ATG-CTTTTAACCAAACATTTGCTGTTCCGTCAGCAGGCATTCATCCCGG   1028
                     ||| ||||.|.|| ..|.|||||.||.|||||||||||||||||.|||||
RBAM_013370__    977 ATGTCTTTCATCC-GTCGTTTGCCGTCCCGTCAGCAGGCATTCACCCCGG   1025

BSNT_02287___   1029 CATGGTTCCGCTATTAATGCGTGATTTCGGCATAGACCACATTATTAACG   1078
                     .|||||.||..|.||.|||||.|||||||||||.||.|||||.||.||.|
RBAM_013370__   1026 TATGGTGCCATTGTTGATGCGCGATTTCGGCATCGATCACATCATCAATG   1075

BSNT_02287___   1079 CCGGAGGAGGCGTACATGGACATCCGAACGGTGCCCAAGGCGGGGGGCGA   1128
                     ||||.||||||.|.||.||.||||||||.||.|.|.|.||||||||...|
RBAM_013370__   1076 CCGGCGGAGGCATTCACGGCCATCCGAAAGGAGGCGAGGGCGGGGGAAAA   1125

BSNT_02287___   1129 GCGTTCAGAGCCATTATTGATGCGGTCCTAGAGGCCCAGCCGATTGATGA   1178
                     ||||||.|.|||||.|||||||||||.||.||.||.|||||||||||.||
RBAM_013370__   1126 GCGTTCCGCGCCATCATTGATGCGGTGCTTGAAGCGCAGCCGATTGAAGA   1175

BSNT_02287___   1179 AAAAGCCGAACAATGCAAGGATCTTAAGCTTGCGCTAGATAAATGGGGAA   1228
                     ||||||||.....|||||.||||||.||||.||..||||.||||||||||
RBAM_013370__   1176 AAAAGCCGCGTCGTGCAAAGATCTTCAGCTCGCATTAGACAAATGGGGAA   1225

BSNT_02287___   1229 AGGTTGAAGCCGTATGA   1245
                     .|||.||||||||||||
RBAM_013370__   1226 GGGTGGAAGCCGTATGA   1242


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