Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02294 and RBAM_013420

See Amino acid alignment / Visit BSNT_02294 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_02294___kinD.1.9828.seq
#    -bsequence dna-align/RBAM_013420___kinD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02294___kinD-RBAM_013420___kinD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02294___kinD-RBAM_013420___kinD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02294___kinD
# 2: RBAM_013420___kinD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1542
# Identity:    1126/1542 (73.0%)
# Similarity:  1126/1542 (73.0%)
# Gaps:          81/1542 ( 5.3%)
# Score: 3938.0
# 
#
#=======================================

BSNT_02294___      1 TTGAAAATACTAAAAGGCGCCTGCGGGAGAG-TCAAACTTTATATCATAC     49
                     .||||.|.|.|.|||||.|||.| ||||.|| ||||.||||||.|||||.
RBAM_013420__      1 GTGAATACATTTAAAGGTGCCCG-GGGAAAGATCAAGCTTTATCTCATAT     49

BSNT_02294___     50 TGGTCGTGATTCCGGCAATCGTCATCAGCTTTTTCGTATATGAAAAAGAA     99
                     ||||..|.||.||||||.|..|.||||||||||||.|.||||||||||||
RBAM_013420__     50 TGGTGATCATCCCGGCACTTATTATCAGCTTTTTCATTTATGAAAAAGAA     99

BSNT_02294___    100 AAAGATACAATAGCTGCAGAACATAAACAAGAAGCAAGTGTCCTGCTAAA    149
                     ||..|.|.||||||.|...||||.|.|||.|||||.|||.|..||||.||
RBAM_013420__    100 AAGCAGAAAATAGCCGATAAACACATACAGGAAGCCAGTATGATGCTCAA    149

BSNT_02294___    150 CCTTCACCGCAACAAAATCAATTATTTAATCGGAGAAACAATGGCGAGAA    199
                     ||||||||||||.||..||||||||||||||||.|||||||..||..|.|
RBAM_013420__    150 CCTTCACCGCAATAAGCTCAATTATTTAATCGGTGAAACAAAAGCCCGGA    199

BSNT_02294___    200 TGACCTC-CTTGTCCATCGCCATCGACAGACCGGTTGATATAAAGAAAAT    248
                     ||||..| |||| |.|||||..||||.|..||.||  ..||.||||||| 
RBAM_013420__    200 TGACAACACTTG-CGATCGCTGTCGATAAGCCTGT--CAATGAAGAAAA-    245

BSNT_02294___    249 G--CAGTCA-ATTTTGGAAAAGACCTTTGATTCAGAGCCGAGATTTTCCG    295
                     |  ||.|.| |||.|.||..||.|.|||||....||.||.|||||...||
RBAM_013420__    246 GATCATTGACATTCTCGATCAGGCTTTTGAGGATGAACCCAGATTCAGCG    295

BSNT_02294___    296 GTCTCTATTTTCTCAATGCCAAAGGAGACGTCACCGCAAGCACAACCGAA    345
                     ||||.|||.|.||.|||.|||||||.||.||||.|||||||||.||.||.
RBAM_013420__    296 GTCTGTATATGCTGAATTCCAAAGGTGATGTCATCGCAAGCACGACTGAT    345

BSNT_02294___    346 TTAAAAACGAAAGTAAACCTGGCCGACAGATCTTTTTTTACAAAAGCAAA    395
                     .|.|||.|.||.||.||..|||||||||||.|.|.||||||.||.||.||
RBAM_013420__    346 CTGAAATCAAAGGTGAATTTGGCCGACAGACCGTATTTTACGAAGGCGAA    395

BSNT_02294___    396 GGAAACTAAAAAGACAGTCATTTCAGATAGTTATTCGAGCAGAATTACTG    445
                     ..|.||.|||||.||.|||||..||.||...||.||.|||||||||||.|
RBAM_013420__    396 AAAGACGAAAAAAACGGTCATCACAAATGACTACTCCAGCAGAATTACAG    445

BSNT_02294___    446 GTCAGCCAATTTTCACAATTTGTGTCCCTGTTTCGGACTCAAAACGTAAT    495
                     |.||||..||.|||||.||.||.||.||.||.|..|||.|||||||..|.
RBAM_013420__    446 GCCAGCGCATCTTCACGATCTGCGTGCCGGTGTTAGACGCAAAACGGGAA    495

BSNT_02294___    496 GTGACAGATTATCTTGTCGCAGCTATTCAAATTGATTATTTGAAAAATCT    545
                     ||.||.||||||.|.||.||.||.||.|||.|.||||||||||.||||.|
RBAM_013420__    496 GTCACGGATTATTTAGTAGCCGCCATACAAGTCGATTATTTGAGAAATAT    545

BSNT_02294___    546 CATTAACTTGCTGAGCCCTGATGTTTATATTGAAGTTGTG-AACCA---A    591
                     .||.||..|||||||||||||.|||||| .|.|||    | |||||   |
RBAM_013420__    546 GATCAATATGCTGAGCCCTGACGTTTAT-GTCAAG----GCAACCAATCA    590

BSNT_02294___    592 GACGGGAAAATGATTTTTGCGAGCGGACAAGCCTCTCATGCAGAGGATCA    641
                     ||  ..|||.||||.|||||.|||||||..||...|||..||||.|.|..
RBAM_013420__    591 GA--ATAAAGTGATATTTGCCAGCGGACGGGCTGATCAATCAGAAGGTGT    638

BSNT_02294___    642 GAAACCTGTCAGCGGATATCTGGATGATATCAGCTGGAATATGAAAGTCT    691
                     ||||||.||||||||.||||||||||||||.|..||||||||.||.||.|
RBAM_013420__    639 GAAACCGGTCAGCGGCTATCTGGATGATATTAATTGGAATATCAATGTTT    688

BSNT_02294___    692 ATCCGAACCCGGT----CACAATAGAAGAACTGACGAAAAGCCTAGTGCT    737
                     |||||||.|||||    |..|||    ||.|||||.||||||.|..||||
RBAM_013420__    689 ATCCGAAACCGGTTGAGCTGAAT----GAGCTGACCAAAAGCGTGCTGCT    734

BSNT_02294___    738 TCCGCTTTCATGTATTATTGTTCTGCTGAATATCCTTTTTATTCTCGTGC    787
                     .|||.|.||..|||||...||.|||||||||||.||.||.||.|||||.|
RBAM_013420__    735 GCCGATGTCCAGTATTGCCGTGCTGCTGAATATTCTGTTCATCCTCGTTC    784

BSNT_02294___    788 TGTATTATTTGCTGAAGCGGCAGACCCAGCTGGAGCGCTCAGAAAACGAG    837
                     ..||||||.||||.|||||..|||||||||||||||||.|..||||.||.
RBAM_013420__    785 AATATTATCTGCTTAAGCGCAAGACCCAGCTGGAGCGCGCTCAAAATGAA    834

BSNT_02294___    838 GCGCAAAAATTAGAACTGATCGGGACGCTTGCTGCCAGCACAGCCCATGA    887
                     |||||.|||||.||.||||||||.||||||||.||||||||.||||||||
RBAM_013420__    835 GCGCAGAAATTGGAGCTGATCGGAACGCTTGCCGCCAGCACCGCCCATGA    884

BSNT_02294___    888 AATCCGTAACCCTCTTACCGGCATAAGCGGCTTTATTCAGCTGTTGCAAA    937
                     ||||||.|||||.|||||.||.||.||||||||.||||||||.|||||.|
RBAM_013420__    885 AATCCGCAACCCGCTTACAGGGATCAGCGGCTTCATTCAGCTTTTGCAGA    934

BSNT_02294___    938 AGAAATATAAAGGTGAAGAGGATCAGCTTTACTTCTCCATTATCGAACAG    987
                     |.|||||.|||...||.||.||||||||.||.|||||.|||||.||.|||
RBAM_013420__    935 AAAAATACAAATCGGAGGAAGATCAGCTGTATTTCTCAATTATTGAGCAG    984

BSNT_02294___    988 GAGATAAAGCGCATCAATCAAATAGTGAGTGAGTTTCTCGTTCTCGGCAA   1037
                     |||||.||.||.||||||||.||.||.|||||||||.|.||.||.||.||
RBAM_013420__    985 GAGATTAAACGGATCAATCAGATTGTCAGTGAGTTTTTAGTGCTTGGAAA   1034

BSNT_02294___   1038 GCCGACAGCTGAAAAATGGGAGCTGAACTCACTTCAGGACATTATCGGAG   1087
                     .||.||.||||||...|.|||..|||||||.||.|||||.|||.|.|..|
RBAM_013420__   1035 ACCCACTGCTGAACGGTTGGAAGTGAACTCGCTGCAGGATATTCTTGATG   1084

BSNT_02294___   1088 AAATTATGCCGATCATTTATTCTGAGGGCAATCTATACAATGTTGAAGTC   1137
                     |.|||||||||||.|||||||||||.||.||||||||||||||.||||| 
RBAM_013420__   1085 AGATTATGCCGATTATTTATTCTGAAGGGAATCTATACAATGTGGAAGT-   1133

BSNT_02294___   1138 GAAT-TGCAGTAT-----TTAACCGAGCAGCCCTTACTC---GTAAAATG   1178
                     |||| ||.|| ||     |.||.||    |||   .|||   ||.||.||
RBAM_013420__   1134 GAATGTGGAG-ATTCTCGTCAATCG----GCC---GCTCAAGGTCAACTG   1175

BSNT_02294___   1179 TACAAAAGATCATATTAAACAAGTGATTTTAAATGTAGCAAAAAATGGCC   1228
                     .||.|||||.|||||||||||.||||||||||||||.||.|||||.|..|
RBAM_013420__   1176 CACGAAAGACCATATTAAACAGGTGATTTTAAATGTCGCGAAAAACGCGC   1225

BSNT_02294___   1229 TCGAGTCAATGCCTGAAGGAGGCAAACT----AACGATTT-----CCCTG   1269
                     |.||.||.||||..|||||.|||...||    |.|.||||     |||  
RBAM_013420__   1226 TGGAATCCATGCAGGAAGGCGGCCGGCTGTCCATCTATTTAGAAGCCC--   1273

BSNT_02294___   1270 GGAGCTTTAGATAAAAAAGCCATAATCAAAGTTGTGGATAACGGTGAA--   1317
                        ||    |||.|.|||||..|.||.||.||.|..||.||||  |||  
RBAM_013420__   1274 ---GC----GATCATAAAGCAGTCATTAAGGTGGCCGACAACG--GAATG   1314

BSNT_02294___   1318 GGGATTTCTCAGGAAATGCTGGATCACATCTTCCTTCCCTTTGTTACTTC   1367
                     ||.||||||.|.||.|||||.||.|||||.||.|||||.|||||.||.||
RBAM_013420__   1315 GGCATTTCTGAAGATATGCTTGAGCACATTTTTCTTCCGTTTGTAACGTC   1364

BSNT_02294___   1368 TAAAGAAAAAGGAACCGGGCTCGGCCTTGTTGTTTGTAAACGGATCGTGC   1417
                     .||.||||||||.|||||.|||||||||||.||.||||||||.|||.|||
RBAM_013420__   1365 AAAGGAAAAAGGCACCGGCCTCGGCCTTGTCGTATGTAAACGAATCATGC   1414

BSNT_02294___   1418 TGATGTACGGAGGCTCTATTCATATTGAAAGTGAAGTGCG--AAGAGGCA   1465
                     ||||||||||.||.||.|||.|.|||.||||.||||| ||  ||| ||||
RBAM_013420__   1415 TGATGTACGGCGGTTCGATTGACATTCAAAGCGAAGT-CGATAAG-GGCA   1462

BSNT_02294___   1466 CAAAGGTGACAATCACCCTCCCCGTATCCGCATCATAG----   1503
                     ||.||||.||.||.||||||||.|   ||||.|| |.|    
RBAM_013420__   1463 CAGAGGTCACCATTACCCTCCCTG---CCGCTTC-TCGATGA   1500


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