Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02315 and RBAM_013600
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_02315___ykvU.1.9828.seq
# -bsequence dna-align/RBAM_013600___ykvU.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02315___ykvU-RBAM_013600___ykvU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02315___ykvU-RBAM_013600___ykvU.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02315___ykvU
# 2: RBAM_013600___ykvU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1354
# Identity: 1082/1354 (79.9%)
# Similarity: 1082/1354 (79.9%)
# Gaps: 29/1354 ( 2.1%)
# Score: 4271.5
#
#
#=======================================
BSNT_02315___ 1 ATGAATCGATTTGTGAAAGGGATCATTCTTTTATCCATTGCCGCCTTTTT 50
||||||||||||||||||||||||||||||||||||||.|||||||||||
RBAM_013600__ 1 ATGAATCGATTTGTGAAAGGGATCATTCTTTTATCCATCGCCGCCTTTTT 50
BSNT_02315___ 51 CGCTGAATGCCTTGAATTTGTCGTCAATATGATTTTGGCGCGGGAGCTTG 100
|||.|||||.||.|||||||||||.||||||||..|||||||||||||||
RBAM_013600__ 51 CGCGGAATGTCTGGAATTTGTCGTGAATATGATACTGGCGCGGGAGCTTG 100
BSNT_02315___ 101 GCGAGCATGGGATGGGGCTTTACATGAGTATTTTGCCCACGATCTTTTTA 150
||||||||||||||||.|||||||||||.|||.|||||||.||.||||||
RBAM_013600__ 101 GCGAGCATGGGATGGGACTTTACATGAGCATTCTGCCCACCATTTTTTTA 150
BSNT_02315___ 151 ATTATTGTCATCGCGAGCCTGGAACTGCCGATATCCATTTCTAAATTCAT 200
|||||.||||||||.||.|||||.||.|||||.||||||||.||||||||
RBAM_013600__ 151 ATTATCGTCATCGCCAGTCTGGAGCTTCCGATCTCCATTTCAAAATTCAT 200
BSNT_02315___ 201 TGCCGAGTCAAATCCTAAGCTTCATGAAAGCATGCTGAGGCACGCTTTCA 250
.||.||.||.||||..|||||.||||||||||||||..||||.||.||||
RBAM_013600__ 201 CGCGGAATCCAATCAGAAGCTGCATGAAAGCATGCTCCGGCATGCCTTCA 250
BSNT_02315___ 251 GAATGACAGCCATTTTTACTGCTTTTTCTACTGCTGCCGCTAGTATTGCG 300
|||||||.|||.|||||||.||.|||||.||.||.|||||.||.||.|||
RBAM_013600__ 251 GAATGACCGCCGTTTTTACCGCGTTTTCAACCGCGGCCGCAAGCATCGCG 300
BSNT_02315___ 301 CTTCCGTTTATTCCGGTATTTGATACATACCACCCGTTTATTAAAGGGAT 350
||.|||||.|||||.|||||.|||||.||.||||||||||||||||||||
RBAM_013600__ 301 CTGCCGTTCATTCCTGTATTCGATACGTATCACCCGTTTATTAAAGGGAT 350
BSNT_02315___ 351 TGTCATCGGCTTAATTCCTGTTGTCGCCTTTACTTCAATCGCCAGGGGCT 400
|||||||||..|.|||||.||.|||||.|||||.||.||||||||.||.|
RBAM_013600__ 351 TGTCATCGGGCTGATTCCAGTCGTCGCTTTTACATCCATCGCCAGAGGTT 400
BSNT_02315___ 401 ACTTTATGGGTGTGCAGAAAATGGGGAAGATCGCAATTGCCAATGTGCTG 450
|.|||||||||||||||.|||||||.||.|||||..||||.|||||..||
RBAM_013600__ 401 ATTTTATGGGTGTGCAGCAAATGGGAAAAATCGCGGTTGCGAATGTCATG 450
BSNT_02315___ 451 AAAAAAATCATCCA---GCTCTTG--TGCTTATTCCTCTTTTTTCAATGG 495
|||||||||||.|| ||| ||| ||.||| ||||||||||||||
RBAM_013600__ 451 AAAAAAATCATTCAAGTGCT-TTGTCTGTTTA----TCTTTTTTCAATGG 495
BSNT_02315___ 496 TACTCATTTGAATTGGACATGGCTGTGCTGATTTCCTTGTTTGTTCTAGT 545
|||||.||||||.|.||.|||||.|||||.|||||.||.|||||.||.||
RBAM_013600__ 496 TACTCTTTTGAAATTGATATGGCCGTGCTCATTTCATTATTTGTGCTGGT 545
BSNT_02315___ 546 CGTGAGTGATGTGGTCGTGCTTGTTTATTTATATTCACAATTTATCATGG 595
||..||.|||||.||.|||.|.|||||.||.|||.|.||.|||||..|||
RBAM_013600__ 546 CGCAAGCGATGTCGTGGTGTTCGTTTACTTGTATACGCAGTTTATTTTGG 595
BSNT_02315___ 596 CAAGGCGGGCGTTATCCGGCCAGCAGCACATTCATTTGCGCGGAAAGGAT 645
|..||.|||||.|.||||||||.||||||||||||.|.|||||.||.||.
RBAM_013600__ 596 CGCGGAGGGCGCTTTCCGGCCATCAGCACATTCATCTTCGCGGGAAAGAC 645
BSNT_02315___ 646 GTAAGGAAAAGACTGCTTGCTGTTTCAATTCCTACAACAGGACTGCGCAT 695
||..|||||.|.||.||.||.||.||.||.||.|||||.|||||.||.||
RBAM_013600__ 646 GTGCGGAAACGCCTCCTGGCCGTATCCATCCCGACAACGGGACTTCGTAT 695
BSNT_02315___ 696 TTTTCATGCGGTTGTC-AATGCAATTGAACCCTTTTTAGTAAAAGGAGCT 744
.||||||||.| ||.| ||.||.|||||||||||||||||.||||||||.
RBAM_013600__ 696 ATTTCATGCAG-TGACAAACGCCATTGAACCCTTTTTAGTGAAAGGAGCG 744
BSNT_02315___ 745 CTTTTGGC-TGCGGGCGTTGCCGGGACAGCGGCGATCGATCAATACGGAA 793
||..|||| |.|||| |..|||||||||||.|||||.|||||||||||.|
RBAM_013600__ 745 CTGCTGGCGTCCGGG-GCAGCCGGGACAGCCGCGATTGATCAATACGGCA 793
BSNT_02315___ 794 TGCTGGCAGGAGTGGCTGTGACGATAGGGTCGTTCCCTGCTTTTATTGCC 843
||||.||.||.||.||..||||.||.||.|||||.||.||.|||||.|||
RBAM_013600__ 794 TGCTTGCCGGTGTAGCGATGACAATCGGTTCGTTTCCCGCATTTATCGCC 843
BSNT_02315___ 844 CATTCGTTAATGGTCGTCATGATACCGAGTATTTCGGAAGCTTATGCACT 893
||||||.|.||||||||||||||.||.||.|||||.|||||.|||||.||
RBAM_013600__ 844 CATTCGCTGATGGTCGTCATGATTCCCAGCATTTCAGAAGCGTATGCGCT 893
BSNT_02315___ 894 TTCTCAGTATGACATCGTGTTAAAAAGGCTGAAGCAGTCGATTTTCATTA 943
.||.||.|||||.||.|||.|||||.||||||..||..|||||||.||||
RBAM_013600__ 894 GTCCCAATATGATATTGTGCTAAAACGGCTGAGACAAGCGATTTTTATTA 943
BSNT_02315___ 944 CATTAGGTTACGGTATACCTGCCGTCTGGGTCATGTTCCAGTTTGCGGGA 993
||||.||.|||||.||.||.||.||||||||||||||.|||||.|||||.
RBAM_013600__ 944 CATTCGGCTACGGCATTCCGGCAGTCTGGGTCATGTTTCAGTTCGCGGGC 993
BSNT_02315___ 994 CCTCTCACGCATTTGTTTTTTCACTCTCCTGAAGCGCAGTATTACTTGCA 1043
||.||.||.||||||||||||||.|||||.||||||||||||||.|||||
RBAM_013600__ 994 CCGCTGACCCATTTGTTTTTTCAGTCTCCGGAAGCGCAGTATTATTTGCA 1043
BSNT_02315___ 1044 GCTGTTGTGGCCTTACTTTCTCTTTCATCTGTTTGTCATGCCGCTGCAGG 1093
|||.||||||||.|..|||||.|||||.||||||||.||||||||.||||
RBAM_013600__ 1044 GCTTTTGTGGCCGTTTTTTCTTTTTCACCTGTTTGTGATGCCGCTTCAGG 1093
BSNT_02315___ 1094 CGTGCTTAATCGGGATGGGCTTTGTGAAAGAGGCTTTTTATCACAATGTA 1143
|.||..|.|||||.||.|||...||||||..|||.||||||||.||.|||
RBAM_013600__ 1094 CCTGTCTGATCGGTATCGGCCACGTGAAAACGGCGTTTTATCATAACGTA 1143
BSNT_02315___ 1144 TGGAGCCATATCGTTGCGCTAAGTATGATGTATGTACTGGGATCAATG-- 1191
||||||...||.||.|.|||....|||||||||||.||.||.||.|||
RBAM_013600__ 1144 TGGAGCAGCATTGTAGGGCTTTCGATGATGTATGTGCTCGGTTCTATGCC 1193
BSNT_02315___ 1192 GAGAATCTGCAAATGCTCGGGATTATCCTTGGAATGAACACTGGCATGAT 1241
| |||| |||||||||||||.|||||.||.||.|||||.||.||||||||
RBAM_013600__ 1194 G-GAAT-TGCAAATGCTCGGCATTATACTCGGCATGAATACCGGCATGAT 1241
BSNT_02315___ 1242 TCTTTTGACGAGCCTGCACTATGCCACGATCTGCAAAG-CATTGAAG-GT 1289
||||.||||.||..|.||.||.||.||||||||||||| |.|.| | ||
RBAM_013600__ 1242 TCTTCTGACAAGTTTACATTACGCGACGATCTGCAAAGACCTCG--GTGT 1289
BSNT_02315___ 1290 ATCCGTATTCCTTACGGGAGG-----GACCAGAACGCCGCGAATTGAAGG 1334
.|||||.||..|.|||||.|| ||.||| ||||.||.||.|||.|
RBAM_013600__ 1290 CTCCGTGTTTTTGACGGGCGGCGGAAGAACAG--CGCCCCGGATCGAAAG 1337
BSNT_02315___ 1335 ATGA 1338
.|||
RBAM_013600__ 1338 CTGA 1341
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