Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02320 and RBAM_013620

See Amino acid alignment / Visit BSNT_02320 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_02320___ykvW.1.9828.seq
#    -bsequence dna-align/RBAM_013620___ykvW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02320___ykvW-RBAM_013620___ykvW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02320___ykvW-RBAM_013620___ykvW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02320___ykvW
# 2: RBAM_013620___ykvW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1981
# Identity:    1424/1981 (71.9%)
# Similarity:  1424/1981 (71.9%)
# Gaps:         134/1981 ( 6.8%)
# Score: 4905.0
# 
#
#=======================================

BSNT_02320___      1 ATGAATGAACAAGTTATCGTTCAACGCGACCCGCACGAGCCATTGAAAAC     50
                     ||||||||||||||.||          |||.|..||   |||||.|.|||
RBAM_013620__      1 ATGAATGAACAAGTGAT----------GACACAAAC---CCATTCACAAC     37

BSNT_02320___     51 AG-----ACAAGAGG--------GAAAAAAACTGGGCACAGCACGCGGAG     87
                     ||     ||||||.|        |.||||||.|||...|||||.||.||.
RBAM_013620__     38 AGCACATACAAGAAGAGCGGGCCGGAAAAAAGTGGCTCCAGCATGCAGAA     87

BSNT_02320___     88 CTTATTGCTGCACTTGTATCAGGCGCTCTTATTTTGGCAGGCTGGCTCTT    137
                     ||.|||||.||.||.|||||.||||..||||||.|.||.|.||||.|.||
RBAM_013620__     88 CTCATTGCGGCGCTCGTATCCGGCGTCCTTATTCTTGCGGCCTGGTTTTT    137

BSNT_02320___    138 ATCCG-GATATCAGGTATTATCCATAATACTTT-TCT-TGCTGGCTTTTG    184
                     ..||| .|.|..||| ..|.|||.|  .||||| |.| |.||.||.||..
RBAM_013620__    138 TACCGAAACAAAAGG-CCTGTCCGT--CACTTTGTATATCCTTGCCTTCC    184

BSNT_02320___    185 TGATCGGCGGATTTGCTAAAGCAAAGGAAGGAATCGAAGAAACACTCGAA    234
                     |||||||.||||||||.|||||.||.||.|||||.||.||.||..|.||.
RBAM_013620__    185 TGATCGGGGGATTTGCAAAAGCGAAAGAGGGAATTGAGGATACCATTGAG    234

BSNT_02320___    235 TCCAAAACGCTGAATGTAGAACTTTTAATGATTTTCGCTGCCGTTGGTTC    284
                     .|.||..||.|.|||||.|||||..|.||||||||.|||||.||.||.||
RBAM_013620__    235 ACGAAGGCGTTAAATGTGGAACTGCTGATGATTTTTGCTGCTGTCGGCTC    284

BSNT_02320___    285 CGCCTTGATCGGATACTGGGCAGAGGGTGCTATTTTAATATTTATTTTTT    334
                     ||||.|||||||.||.|||||.||.||.|||.||.|.||.||||||||||
RBAM_013620__    285 CGCCCTGATCGGTTATTGGGCTGAAGGCGCTGTTCTTATCTTTATTTTTT    334

BSNT_02320___    335 CCTTAAGCGGAGCTTTAGAAACATACACGATGAATAAAAGCAGCAGAGAT    384
                     |.||||||||.||..|.||||||||.||||||||||||||||||.|.|||
RBAM_013620__    335 CGTTAAGCGGCGCGCTCGAAACATATACGATGAATAAAAGCAGCCGTGAT    384

BSNT_02320___    385 TTAACGTCTTTAATGCAGCTTGAGCCTGAAGAAGCGACATT-------GA    427
                     |||||.|||||||||.|.||.||.||.||.|||||||||.|       ||
RBAM_013620__    385 TTAACATCTTTAATGAAACTGGAACCGGAGGAAGCGACACTGCTTGCGGA    434

BSNT_02320___    428 TGGTCAATGGTGAAACCAAAAGAGTTCCGGTTTCAG-ACTTGCAGGCCGG    476
                     .||.|    |.|||   ||..|.||.||||.|.|.| |||| .||..|||
RBAM_013620__    435 CGGAC----GGGAA---AAGCGGGTGCCGGCTGCTGAACTT-AAGATCGG    476

BSNT_02320___    477 TGATATGATTGTGATCAAACCTGGAGAACGCGTAGCGGCAGACGGTATCA    526
                     |||.|||||.||.||.||.||.||.|||||||||||.||||||||.||||
RBAM_013620__    477 TGACATGATCGTCATTAAGCCGGGCGAACGCGTAGCAGCAGACGGGATCA    526

BSNT_02320___    527 TTGAATCGGGCTCGACAAGTCTTGACGAGTCGGCTTTAACAGGTGAATCA    576
                     ||||.||.|||..|||.||.||.||.||.|||||..|.||.||||||.|.
RBAM_013620__    527 TTGAGTCTGGCGTGACGAGCCTCGATGAATCGGCGCTTACGGGTGAAGCG    576

BSNT_02320___    577 ATGCCTGTAGAAAAAAACAG-AGGCGACGCTGTATTCACAGGAACGGTGA    625
                     ||||| |..|.||||||||| .||.||..||||.||.|||||||||||.|
RBAM_013620__    577 ATGCC-GGCGGAAAAAACAGCCGGAGATTCTGTGTTTACAGGAACGGTAA    625

BSNT_02320___    626 ATCGCAATGGCTCCTTGACTGTCCGTGTCACGAAAGCAAATGAAGATTCG    675
                     |..|.||.||||||||.||.||.|||||.||||||.||||||||.|.||.
RBAM_013620__    626 ACGGAAACGGCTCCTTAACGGTTCGTGTGACGAAAACAAATGAACAGTCT    675

BSNT_02320___    676 TTATTCAGAAAAATTATCAAACTGGTTGAATCAGCGCAAAATAGTGTTTC    725
                     ||||||||||||||.||....|||||.||||||||.|||||.||.||.||
RBAM_013620__    676 TTATTCAGAAAAATCATTCGGCTGGTGGAATCAGCCCAAAACAGCGTGTC    725

BSNT_02320___    726 ACCCGCTCAGGCTTTCATCGAACGATTTGAAAATGCTTATGTGAAAGGTG    775
                     |||.||||||||.||.||.|||||.||.||||.||..|||||.|||||.|
RBAM_013620__    726 ACCGGCTCAGGCATTTATTGAACGGTTCGAAAGTGTCTATGTCAAAGGCG    775

BSNT_02320___    776 TGCTAATTGCGGTGGCGCTCCTTTTATTCGTCCCGCACTTTGCGCTGGGC    825
                     ||||..|.||.|||||..|.|||||||||.|.||.||.||.||..|.|||
RBAM_013620__    776 TGCTGTTAGCCGTGGCTTTGCTTTTATTCATTCCTCATTTCGCTTTAGGC    825

BSNT_02320___    826 TGGAGCTGGAGTGAAACCTTCTACCGCGCAATGGTGTTTATGGTTGTCGC    875
                     ||||||||||||||||||||.|||.|.||.||||||||||||||.|||||
RBAM_013620__    826 TGGAGCTGGAGTGAAACCTTTTACAGGGCGATGGTGTTTATGGTGGTCGC    875

BSNT_02320___    876 GTCACCTTGTGCGCTTGTCGCCTCTATTATGCCGGCGGCGCTGTCCCTGA    925
                     .||.||.||.||.||||||||.|||||||||||.||.|||||.|||||.|
RBAM_013620__    876 CTCCCCGTGCGCACTTGTCGCTTCTATTATGCCCGCTGCGCTTTCCCTTA    925

BSNT_02320___    926 TTTCAAATGGCGCCCGCAACGG--TATGCTTGTGAAAGGAAGCGTCTTTC    973
                     |.||||||||.|||||||||||  |||  |.||.||||||||.||.|||.
RBAM_013620__    926 TCTCAAATGGTGCCCGCAACGGATTAT--TGGTTAAAGGAAGTGTGTTTT    973

BSNT_02320___    974 TTGAACAGCTGGGCTCAGTGCAAATGATCGCCTTTGATAAAACCGGCACT   1023
                     |.||.||||||||....||.|..||||||||.|||||.|||||||||||.
RBAM_013620__    974 TAGAGCAGCTGGGAAGCGTACGGATGATCGCATTTGACAAAACCGGCACG   1023

BSNT_02320___   1024 GTAACAAAAGGCCAGCCTGCCGTAGAGACGATTAGAA--TAGCAGAAGGA   1071
                     ||.|||||.||.|||||.||.||.|.|.| |||..||  | ||.||| .|
RBAM_013620__   1024 GTCACAAAGGGACAGCCGGCAGTCGCGGC-ATTTCAAGCT-GCGGAA-CA   1070

BSNT_02320___   1072 T-TCAGTGAAGCGGAAGTTCTTG-AGGCTGTCTATGCCATCGAAATGCAA   1119
                     | |.|||||||..| ||.||.|| ||||.||.|||||.||.||||.||||
RBAM_013620__   1071 TGTAAGTGAAGATG-AGATCATGCAGGCGGTGTATGCAATGGAAAAGCAA   1119

BSNT_02320___   1120 TCAAGCCATCCGCTCGCCCAAGCCATAACGGCGTACGCTGAAAGCCGCGG   1169
                     ||||||||.||.||.||..||||.|||.|.|..|..||.||||||||.||
RBAM_013620__   1120 TCAAGCCACCCTCTTGCAAAAGCGATAGCTGAATTTGCCGAAAGCCGGGG   1169

BSNT_02320___   1170 CGTGAATCAGTCCG-----GC--TACA--TATCTATAGAAGAAACCTCAG   1210
                     ||         |||     ||  .|||  ||||.||.||.||.||.||.|
RBAM_013620__   1170 CG---------CCGCGCCCGCAGGACATCTATCGATTGACGAGACGTCCG   1210

BSNT_02320___   1211 GGTTTGGCGTTATGGC------AGAAGTGTCGGGTGCG--AAATGGAAGG   1252
                     |.||.||.|||..|||      |||||        |||  |||||||.||
RBAM_013620__   1211 GATTCGGTGTTCAGGCTGAAATAGAAG--------GCGTCAAATGGATGG   1252

BSNT_02320___   1253 TCGGTAAAGCAGGTTTTATCGGCGAGGAAATGGCAGCACAA----TTTTT   1298
                     ||||.|||||.||.|||...||.||.||...|||||    |    |||||
RBAM_013620__   1253 TCGGAAAAGCGGGGTTTGCAGGTGAAGATGCGGCAG----ATGCTTTTTT   1298

BSNT_02320___   1299 G-AAACA-----AACAGCATCAGATGTCATTCAAAGCGGTCATACAATTG   1342
                     | |.|||     ||.||.||.|.|.|  ||  |||  |||..||||.|.|
RBAM_013620__   1299 GCAGACATCGGGAAAAGAATTAAAGG--AT--AAA--GGTTTTACACTGG   1342

BSNT_02320___   1343 TATTTGTGAAAAAGGATGATCAAATAGCAGGCTGTATCGCACTGAAGGAC   1392
                     |.|||||.|||||.|||||.|..||.||.|||||..|.||..|.|||||.
RBAM_013620__   1343 TCTTTGTTAAAAAAGATGACCGGATTGCGGGCTGCTTTGCCTTAAAGGAT   1392

BSNT_02320___   1393 CAAATCAGGCCTGAAGCAAAAGAGGTCATGGAAGAAC-TGAACCGACTTG   1441
                     ||||||.|.||||||||.||||..||.||||..||.| ||||.| |||.|
RBAM_013620__   1393 CAAATCCGACCTGAAGCCAAAGCCGTGATGGCTGAGCTTGAATC-ACTGG   1441

BSNT_02320___   1442 GGATTAAAACGGCCATGCTGACAGGAGATCA---CGAAGAC-ACGGCTCA   1487
                     |.||||||||.||||||||.||.||.|||||   .||| || .|||||  
RBAM_013620__   1442 GCATTAAAACAGCCATGCTCACCGGCGATCAGTCTGAA-ACTGCGGCT--   1488

BSNT_02320___   1488 AGCGATTGCCAAGGAAGCCGGCATGACAACTGTCGTAGCAGAATGCCTGC   1537
                      ||.|||||.||.||.||.||||||||.||.||.||.||.||.||.||||
RBAM_013620__   1489 -GCCATTGCAAAAGAGGCGGGCATGACGACGGTTGTTGCCGATTGTCTGC   1537

BSNT_02320___   1538 CTGACCAAAAAGTGAATGAAATCAAACGGTTAAAAGAAGAATTCGGAACG   1587
                     |.||||||||.|..||.|||.|.||...|.|.||||||...|.|||.||.
RBAM_013620__   1538 CGGACCAAAAGGCAAAAGAAGTGAAGAAGCTGAAAGAAACGTACGGCACA   1587

BSNT_02320___   1588 ATTGCAATGGTGGGTGACGGAATCAATGATGCGCCGGCGCTCAAAGCGGC   1637
                     ||.||.||||||||.|||||.||.|||||.|||||.||.||.|||.|.||
RBAM_013620__   1588 ATCGCCATGGTGGGGGACGGCATTAATGACGCGCCCGCTCTGAAAACCGC   1637

BSNT_02320___   1638 GGATGTCGGCATTGCGATGGGCGGCGGAACAGATGTAGCACTTGAGACCG   1687
                     .||.|||||.||||||||||||||.|||||.||.||.||.|||||.||.|
RBAM_013620__   1638 TGACGTCGGTATTGCGATGGGCGGGGGAACGGACGTGGCCCTTGAAACGG   1687

BSNT_02320___   1688 CTGATATGGTCCTCATGAAAAACGATTTGAAAAAGCTCGTAAACATGTGC   1737
                     ||||..|.|||||.||||||||.|||.|..|.|||||.||.||.||||||
RBAM_013620__   1688 CTGACTTAGTCCTTATGAAAAATGATCTTCACAAGCTTGTGAAAATGTGC   1737

BSNT_02320___   1738 CGCTTGTCTCGGAAAATGAACAGGATTATCAAACAAAATATCGTGTTTTC   1787
                     .|..|.||..|||||||||||.|||||||.||.||.|||||  |||||||
RBAM_013620__   1738 AGACTCTCAAGGAAAATGAACCGGATTATTAAGCAGAATAT--TGTTTTC   1785

BSNT_02320___   1788 TCTAGCT----GTAATCTGCCTGCTGATTTGTGCAAACTTTTTGCAGGTG   1833
                     ||  |||    ||.||||||||..||||.||.||.||||||.||||||||
RBAM_013620__   1786 TC--GCTCTCGGTCATCTGCCTTTTGATCTGCGCCAACTTTCTGCAGGTG   1833

BSNT_02320___   1834 ATGGAATTGCCATTTGGCGTGATTGGTCATGAGGGCAGCACGATTTTGGT   1883
                     ||||||.||||.|||||||||||.||.||||||||.|||||||||.||||
RBAM_013620__   1834 ATGGAACTGCCGTTTGGCGTGATCGGGCATGAGGGGAGCACGATTCTGGT   1883

BSNT_02320___   1884 CATACTAAACGGTTTAAGACTCCTAAAATAA   1914
                     |||.||.|||||..|.|||.|..||||||||
RBAM_013620__   1884 CATTCTGAACGGACTGAGATTATTAAAATAA   1914


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