Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02335 and RBAM_013710
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:02
# Commandline: needle
# -asequence dna-align/BSNT_02335___mcpC.1.9828.seq
# -bsequence dna-align/RBAM_013710___mcpC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02335___mcpC-RBAM_013710___mcpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02335___mcpC-RBAM_013710___mcpC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02335___mcpC
# 2: RBAM_013710___mcpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2003
# Identity: 1455/2003 (72.6%)
# Similarity: 1455/2003 (72.6%)
# Gaps: 70/2003 ( 3.5%)
# Score: 5090.5
#
#
#=======================================
BSNT_02335___ 1 TTGTTTAAAAAACTTCACATGAAGATTGCTGTTTTTGTTTCGATTATGTT 50
.|||||||||||.|.||.||.||.||||||||.|||||.|||...|||.|
RBAM_013710__ 1 ATGTTTAAAAAAATGCATATCAAAATTGCTGTGTTTGTATCGGCAATGCT 50
BSNT_02335___ 51 AATCGTCACAGTTGTTCTTTTAATGCTGTCTTCTTATTTGACGCTAAAAC 100
.|||||.||.||||||.||||||.|.|.|||||.||||||||..||||.|
RBAM_013710__ 51 TATCGTAACGGTTGTTTTTTTAACGGTTTCTTCATATTTGACATTAAAGC 100
BSNT_02335___ 101 CGATGATTACAGAGGATGGGAAAAATACAACTCAAAACGTGACGCAGTCA 150
|||||||.||.||.||.|..|||..|||.||..|.||.||.||..|.|||
RBAM_013710__ 101 CGATGATGACGGATGAAGCAAAACGTACGACAGAGAATGTCACCAATTCA 150
BSNT_02335___ 151 CTTGAACAAAATATTGAATTGCAATTAAAGAGTTATG---CCATTTCGTT 197
||.|..||.||.|||||..|.||..|.||.|.|.||| ||.| .||
RBAM_013710__ 151 CTCGGTCAGAACATTGAGCTTCAGCTGAAAAATGATGAGACCGT---ATT 197
BSNT_02335___ 198 ATCAAGATT----GGCTAATGGGGAATTAACGCATACATTTGTAAC---- 239
||..||||| ||| ||.|||||..|.|...|.|||.||.|
RBAM_013710__ 198 ATTGAGATTAGCAGGC----GGTGAATTGTCCCGGTCTTTTCTATCAGAT 243
BSNT_02335___ 240 -GAAACCAAGTAAAGAAGTTGCTCGGCTGTTTCACGATGACATTAAGCAA 288
|.||| ||||||...||.|||||.|||.|||||||..|.||.||.
RBAM_013710__ 244 GGGAAC-----AAAGAAACCGCGCGGCTTTTTAACGATGAGTTAAAACAG 288
BSNT_02335___ 289 ATCAAAGATAACGATGATTATGTTGCGATGGCTTACATAGGCACCGCAAA 338
|||..|.|.||.||..|.|||||.|||.|.||.|||.|.||.||||||||
RBAM_013710__ 289 ATCGGACAGAATGACAAATATGTCGCGCTTGCGTACGTCGGAACCGCAAA 338
BSNT_02335___ 339 AAAAGAAATGTTTACATATCCAAAAGCGGATTTCGCTGAGGATTATGATC 388
.|||.|||||||||||||||||||.||.|||||.||..|.||.|||||||
RBAM_013710__ 339 CAAACAAATGTTTACATATCCAAAGGCCGATTTTGCCAAAGACTATGATC 388
BSNT_02335___ 389 CAGCATCAAGACCATGGTATAAGCTTGCAGCTGAAACCCCGGATCAAGTT 438
|..||...|||.|.|||||||||.|.||.|||||||..||.|||.|.|||
RBAM_013710__ 389 CGACAAATAGAACGTGGTATAAGATGGCGGCTGAAAAACCCGATAAGGTT 438
BSNT_02335___ 439 GTTTGGACGGAACCTTATAAAGATGTCGTGACAGGAGACATGATTGTTAC 488
||.|||||.||.|||||||||||||..|||||.|||||||||||.||.||
RBAM_013710__ 439 GTCTGGACTGACCCTTATAAAGATGCAGTGACGGGAGACATGATCGTGAC 488
BSNT_02335___ 489 TGCATCGAAAGCGATCTTAGA----CGGGCAAAAAGTGATAGGGGTTGCC 534
.||.||.|||||.|| |.|.| ||| ||..||..|.||.||.||.
RBAM_013710__ 489 GGCGTCAAAAGCCAT-TCAAAACAGCGG---AACCGTCGTCGGAGTGGCG 534
BSNT_02335___ 535 AGCTATGACTTGAAACTCTCTGCTATCCAGAGTATGGTCAATAAACAAAA 584
||||..||..||||.||.||..|.||.|||||.||||||||..|.|||||
RBAM_013710__ 535 AGCTTAGATCTGAAGCTGTCCTCCATTCAGAGCATGGTCAACGAGCAAAA 584
BSNT_02335___ 585 GGTGCCTTACAATGGATTTGCCTTTTTAGCTGATACGAGCGGCAATCTTT 634
|||.||.||.||.||||||||.|||||.||.|||...|.||||..||||.
RBAM_013710__ 585 GGTACCGTATAAAGGATTTGCGTTTTTGGCGGATGAAAACGGCTCTCTTC 634
BSNT_02335___ 635 TAGCCCATCCGTCAAATCAAGGAAAAAATATATCAAAGGATCAAACACTG 684
|.||.||||||..|||.||.|||||||||||.||..|.|||||.||..|.
RBAM_013710__ 635 TGGCGCATCCGGAAAAACAGGGAAAAAATATTTCGGAAGATCAGACGTTA 684
BSNT_02335___ 685 CAAACCATCGCATCCGAGAAAAAAGGGATACAAGATGTGAATGGAAAAAT 734
.||..||||.|..|.||.|||.||||.||..||||..||.|.||.||.||
RBAM_013710__ 685 AAAGACATCACCACGGATAAAGAAGGCATCAAAGAGCTGCAGGGGAACAT 734
BSNT_02335___ 735 GGTTGTGTACCAAACGATTGGCGAAACGGGCTGGAAGGTCGGAACGCAAT 784
|||.||.|||||||||.|....|||||.||.|||||.|||||||||||.|
RBAM_013710__ 735 GGTCGTCTACCAAACGGTAAAAGAAACAGGGTGGAAAGTCGGAACGCAGT 784
BSNT_02335___ 785 TTGATACCGATCAATTAATGTGGA-TTTCAGATAAAATGAA-TCGG---G 829
||||.|..|||||..|.||| ||| |..|.||||||||||| .||| |
RBAM_013710__ 785 TTGAAAAAGATCAGCTGATG-GGAGTAGCCGATAAAATGAACACGGTGAG 833
BSNT_02335___ 830 CAAATCTTTGGATATCATTGCTTGCGCTTATCATAACAATTATTCTCAGC 879
|| |||..||.|||.||.|.||.|||.|.||.||.||....||||||
RBAM_013710__ 834 CA----TTTTTATGTCACTGATCGCCCTTGTGATTACGATCGGACTCAGC 879
BSNT_02335___ 880 TACTTCCTGGCCAAAACGATAACCGGTCCGATACAGCAGCTGATCGCAAA 929
||.|||||.||.||||||||||||||.|||||.||||||||||||||.||
RBAM_013710__ 880 TATTTCCTAGCAAAAACGATAACCGGGCCGATTCAGCAGCTGATCGCCAA 929
BSNT_02335___ 930 AACGAAAGCTGTTTCCGCAGGCGATTTAACAGTGCGCGCGGAATCAAAAT 979
|||.||..|.||.||.||.||.||||||||.||.|||||..|..|.||||
RBAM_013710__ 930 AACAAACTCGGTCTCAGCGGGAGATTTAACCGTCCGCGCCCAGACGAAAT 979
BSNT_02335___ 980 CTAAGGATGAAGTCGGTATTTTAACAAGAGATTTCAATCTGATGGTTGAA 1029
|.||.||||||||.||....|||||||.|||.||.||.|..|||||||||
RBAM_013710__ 980 CAAAAGATGAAGTAGGCGAGTTAACAAAAGACTTTAACCAAATGGTTGAA 1029
BSNT_02335___ 1030 AATATGAAGGAAATGGTTGAGCAAG-TGAGACTCTCTTCAGGGAAAGTAT 1078
||||||||.||.|||||.||.||.| |.||.| |||.||||..||.||.|
RBAM_013710__ 1030 AATATGAAAGAGATGGTCGAACAGGTTAAGGC-CTCCTCAGAAAATGTGT 1078
BSNT_02335___ 1079 CTGACACCTCTGAACAACTAACGGCTGTCTCTGCCGAAACTAATGAAACA 1128
||||.||.|||||.||.|||||.|...|.||....|||||.||||||||.
RBAM_013710__ 1079 CTGATACATCTGACCAGCTAACCGTCATTTCACAAGAAACAAATGAAACG 1128
BSNT_02335___ 1129 AGCGGACAAATTGCAAAAGCGATTGAAGAAGTAGCCGCAGGAGCATCGGA 1178
|||||||||||.|||||||||||.||.|||||.|||||.|||||..|.||
RBAM_013710__ 1129 AGCGGACAAATCGCAAAAGCGATAGAGGAAGTCGCCGCCGGAGCGACAGA 1178
BSNT_02335___ 1179 ACAGGCTTCTGAAGTTGAAACCATTAATGAAAAATCGGAAAGCCT----G 1224
.||.||.||.||.|||||.||.||.|||||||||||.||||..|| |
RBAM_013710__ 1179 GCAAGCGTCAGAGGTTGAGACGATCAATGAAAAATCAGAAAATCTCTCGG 1228
BSNT_02335___ 1225 TCAACGAA-------AATCAGGCAAATCGCTGAGGAGGCAGGCGGAATTA 1267
|||| || |||| |||.||||| ||.|||.|.||.|
RBAM_013710__ 1229 TCAA--AATAAAAGGAATC--GCAGATCGC-------GCGGGCAGCATAA 1267
BSNT_02335___ 1268 AAGAACGTTCAAAATCGTCCGAGGATGCAAGCTATAAAGGACTTGACGCG 1317
||.|||..||||||||.||.||||||||.|||||.||||||.|.||||||
RBAM_013710__ 1268 AACAACTCTCAAAATCTTCAGAGGATGCCAGCTACAAAGGATTGGACGCG 1317
BSNT_02335___ 1318 CTCGGCCAGCTGCTGATGAAATCAAACGAAGCCAATATGGAAACGAAAAA 1367
|||||.|||||.||||||||.|||||||||||||||...|||||||||||
RBAM_013710__ 1318 CTCGGGCAGCTACTGATGAAGTCAAACGAAGCCAATTCAGAAACGAAAAA 1367
BSNT_02335___ 1368 GGTTGAAACGATGCTGCTGGATTTGGAAAATCAAACTAAGAATATTGAAG 1417
.||.||..|.||||||...||..|||||.|.|||||.||.||.||.||||
RBAM_013710__ 1368 AGTAGAGGCAATGCTGAATGACCTGGAAGAACAAACGAAAAACATAGAAG 1417
BSNT_02335___ 1418 AAGTCGTTACAGCGATTTCAAACATATCTGATCAAACCAACTTGCTT-GC 1466
|||||||.||.||.||.||...|||.||.||.||.||.|||.| ||| ||
RBAM_013710__ 1418 AAGTCGTGACGGCAATATCCGCCATTTCAGACCAGACGAACCT-CTTGGC 1466
BSNT_02335___ 1467 CTTAAATGCCAGTATTGAGGCAGCCAGAGCCGGAGAAAGCGGGCGCGGTT 1516
..|.|||||.||.|||||.||.||.|||||.|||||||||||.||.||.|
RBAM_013710__ 1467 GCTGAATGCGAGCATTGAAGCCGCAAGAGCGGGAGAAAGCGGCCGGGGCT 1516
BSNT_02335___ 1517 TTGCCGTCGTAGCCGATGAAGTGCGGAAGTTAGCTGAGCAATCAGCCCTT 1566
||||||||||.||.||.|||||.||.|||.|.|||||.||||||||.|||
RBAM_013710__ 1517 TTGCCGTCGTCGCGGAAGAAGTCCGCAAGCTTGCTGAACAATCAGCTCTT 1566
BSNT_02335___ 1567 TCTACAAAGCATATCAGCGAGACTGTGAAGCTTATCCAGCTTGAGACAAA 1616
|||.|....||||||||.|||||.||....||.||.||...|||||||||
RBAM_013710__ 1567 TCTTCCGGCCATATCAGTGAGACGGTCCGTCTGATTCAATCTGAGACAAA 1616
BSNT_02335___ 1617 AGAGGCCTCTCACGCGATGGTTGAGGCAAGCAGAATGAATGATGAACAAA 1666
|||.||.||.|||||||||.||||||||||||||||||||||||||||||
RBAM_013710__ 1617 AGAAGCGTCACACGCGATGATTGAGGCAAGCAGAATGAATGATGAACAAA 1666
BSNT_02335___ 1667 ACAGTGCCATTCACGAAACTGGAGAGGTATTAAATACGATAACTGCAGAA 1716
||||.||.|||||.|||||.||.|||||..|.|||..|||.||..|.|||
RBAM_013710__ 1667 ACAGCGCAATTCATGAAACGGGTGAGGTCCTCAATCTGATTACGACGGAA 1716
BSNT_02335___ 1717 ATGCAGTCACTGGTACAAGGTATTGATCACATTTACGCGGAAATTCAAAG 1766
||||||||.||.||.||||||||.|||||.||||||...||.|||||||.
RBAM_013710__ 1717 ATGCAGTCTCTCGTTCAAGGTATAGATCATATTTACAATGACATTCAAAA 1766
BSNT_02335___ 1767 AATGAGTGAAGAAC-AGCTTGCGATTTCTGAAGCTATTCAAAGCATTTCA 1815
|||||||||||||| ||| .||||||...|||||.|||||||||||.||.
RBAM_013710__ 1767 AATGAGTGAAGAACAAGC-CGCGATTCAAGAAGCGATTCAAAGCATCTCC 1815
BSNT_02335___ 1816 GCCATATCACAGGAATCAGCTGCCGCAGCAGAGGAAGTGAACGCATCAAC 1865
|||||.||.||.|||||.||.||.||.|||||.||||||||.||.||.||
RBAM_013710__ 1816 GCCATTTCTCAAGAATCTGCGGCAGCCGCAGAAGAAGTGAATGCTTCTAC 1865
BSNT_02335___ 1866 CGATGAACAGCTTGTCACCCTTGATAAAGTCAAACACTCAACGGAAACAC 1915
.|||||||||||.||.||.|||||.|||||.||.||.||.||.||.|...
RBAM_013710__ 1866 TGATGAACAGCTCGTTACGCTTGAAAAAGTGAAGCAATCGACTGACATGT 1915
BSNT_02335___ 1916 TAAAACATGCAAGCCAAGAACTTATGAACACAATTGCAAAATTCACATTG 1965
||||....||.|||.||||.||.||.|.|.|.|||.|.||||||||.|||
RBAM_013710__ 1916 TAAAGAGCGCGAGCGAAGATCTCATCAGCGCCATTTCTAAATTCACCTTG 1965
BSNT_02335___ 1966 TAA 1968
|||
RBAM_013710__ 1966 TAA 1968
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