Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02337 and RBAM_013720

See Amino acid alignment / Visit BSNT_02337 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:02
# Commandline: needle
#    -asequence dna-align/BSNT_02337___ykwC.1.9828.seq
#    -bsequence dna-align/RBAM_013720___ykwC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02337___ykwC-RBAM_013720___ykwC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02337___ykwC-RBAM_013720___ykwC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02337___ykwC
# 2: RBAM_013720___ykwC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 874
# Identity:     690/874 (78.9%)
# Similarity:   690/874 (78.9%)
# Gaps:          14/874 ( 1.6%)
# Score: 2658.5
# 
#
#=======================================

BSNT_02337___      1 TTGAAAAAAACAATTGGTTTTATCGGTCTTGGAGTGATGGGAAAGAGCAT     50
                     .||||.|||||..|.||.|||||||||.|.||.||.||||||||.||.||
RBAM_013720__      1 GTGAACAAAACGGTCGGATTTATCGGTTTGGGCGTCATGGGAAACAGTAT     50

BSNT_02337___     51 GGCATCACATATTCT-GAATGACGGCCACCCTGTTTTGGTGTACACCCGG     99
                     |||.||.||.|||.| ||| |..|||.|.||||||||.||.|||||.||.
RBAM_013720__     51 GGCGTCGCACATTTTAGAA-GCGGGCTATCCTGTTTTAGTCTACACGCGT     99

BSNT_02337___    100 ACAAAAGAAAAAGCAGAA-AGCATACTTCAAAAAGGCGCGATCTGGAAAG    148
                     ||.|||.|||||||.||| || ||.||..|.||.||.|||.|||||.|.|
RBAM_013720__    100 ACGAAACAAAAAGCGGAAGAG-ATTCTGAATAAGGGAGCGGTCTGGCAGG    148

BSNT_02337___    149 ATACGGTCAAAGATCTTTCGAAAG-AAGCGGATGTCATCATTACAATGGT    197
                     |.|||||||||||.||||| |.|| ||||.||..|.||.|||||.|||||
RBAM_013720__    149 AGACGGTCAAAGACCTTTC-AGAGAAAGCTGACATTATTATTACCATGGT    197

BSNT_02337___    198 CGGCTATCCCAGTGATGTTGAAGAAGTGTATTTCG--GAAGCAATGGAAT    245
                     |||||||||.||||||||.||.|||.|.|||.|||  |||  ||.||.||
RBAM_013720__    198 CGGCTATCCGAGTGATGTCGAGGAAATCTATCTCGGCGAA--AACGGCAT    245

BSNT_02337___    246 TATTGAAAACGCAAAAGAAGGCGCATATCTTATTGATATGACGACATCTA    295
                     |.|.....|||||||||||||.||.|.|.|.|||||.|||||||||||.|
RBAM_013720__    246 TCTCCGGCACGCAAAAGAAGGGGCGTTTGTCATTGACATGACGACATCAA    295

BSNT_02337___    296 AGCCTTCGCTTGCGAAGAAGATTGCTGAAGCGGCCAAAGAAAAAG--CAT    343
                     |.||.||.||.|||||.||||||||.||....||||||| |||||  |||
RBAM_013720__    296 AACCGTCTCTGGCGAAAAAGATTGCGGAGAAAGCCAAAG-AAAAGTCCAT    344

BSNT_02337___    344 TGTTCGCTTTAGACGCTCCTGTTTCCGGTGGAGACGTCGGTGCACAAAAC    393
                     | ..|||.||.||.||.||||||||||||||||||.||||.||....|||
RBAM_013720__    345 T-CACGCCTTGGATGCACCTGTTTCCGGTGGAGACATCGGCGCGAGGAAC    393

BSNT_02337___    394 GGAACACTCGCGATTATGGTCGGTGGAGAAAAAGAAGCTTTTGAAGCCTG    443
                     |||||.||.||.|||||||.|||.||||||||||||||.||||||||.||
RBAM_013720__    394 GGAACGCTTGCCATTATGGCCGGAGGAGAAAAAGAAGCGTTTGAAGCATG    443

BSNT_02337___    444 CATGCCGATTTTCTCTTTAATGGGAGAGAATATTCAGTATCAAGGATCGG    493
                     |.|||||.|||||||..|.|||||.||.||.||||||||||||||..|||
RBAM_013720__    444 CCTGCCGCTTTTCTCCGTTATGGGGGAAAACATTCAGTATCAAGGGCCGG    493

BSNT_02337___    494 CTGGAAGCGGACAGCATACCAAGATGTGCAATCAGATTGCAATTGCAGCC    543
                     |.||.|||||.||||||||.||.||||||||||||||.||.||||||||.
RBAM_013720__    494 CCGGCAGCGGCCAGCATACGAAAATGTGCAATCAGATCGCGATTGCAGCG    543

BSNT_02337___    544 GGTATGATCGGTGTTGCTGAAGCGATGGCTTATGCCCAAAAATCAGGTCT    593
                     ||.|||.||||.||.|||||||||||||||||.||..|||||||.|||||
RBAM_013720__    544 GGAATGGTCGGAGTGGCTGAAGCGATGGCTTACGCTGAAAAATCCGGTCT    593

BSNT_02337___    594 AGAGCCGGAAAATGTTCTGAAAAGCATCACAACGGGCGCAGCCGGAAGCT    643
                     ..|.||||||.|.||.|||||||||||.|||||.||.||.||.||.||||
RBAM_013720__    594 GAACCCGGAACAAGTGCTGAAAAGCATTACAACCGGAGCGGCTGGCAGCT    643

BSNT_02337___    644 GGTCATTGTCAAATCTTGCTCCCCGTATGCTGCAAGGCAACTTTGAACCG    693
                     |||||.||||||||||.|||||||||||||||.|||||.|.||||..||.
RBAM_013720__    644 GGTCACTGTCAAATCTCGCTCCCCGTATGCTGAAAGGCGATTTTGCGCCC    693

BSNT_02337___    694 GGATTTTATGTGAAGCATTTTATTAAGGATATGGGAATTGCACTAGAGGA    743
                     |||||.||.|||||.||.||||||||.||.||||||||.||.||.||.||
RBAM_013720__    694 GGATTCTACGTGAAACACTTTATTAAAGACATGGGAATCGCCCTTGAAGA    743

BSNT_02337___    744 AGCAGAATTAATGGGGGAAGAAATGCCAGGCTTGTCGCTCGCAAAATCCT    793
                     |||.||..|.|||||.|||||||||||.||.|||.||||.||.|||||.|
RBAM_013720__    744 AGCGGAGCTGATGGGAGAAGAAATGCCCGGATTGGCGCTGGCCAAATCAT    793

BSNT_02337___    794 TATATGACAAGCTAGCTGCTCAAGGTGAAGAAAACAGCGGAACACAGAGT    843
                     ||||.||||||||..|.||.|||||||||||||||||||||||.||.|||
RBAM_013720__    794 TATACGACAAGCTTTCCGCGCAAGGTGAAGAAAACAGCGGAACTCAAAGT    843

BSNT_02337___    844 ATATATAAGCTTTGGGTGAAATAA    867
                     ||.|||||||||||||||||||||
RBAM_013720__    844 ATTTATAAGCTTTGGGTGAAATAA    867


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