Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02344 and RBAM_013780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:03
# Commandline: needle
# -asequence dna-align/BSNT_02344___patA.1.9828.seq
# -bsequence dna-align/RBAM_013780___patA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02344___patA-RBAM_013780___patA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02344___patA-RBAM_013780___patA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02344___patA
# 2: RBAM_013780___patA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1185
# Identity: 937/1185 (79.1%)
# Similarity: 937/1185 (79.1%)
# Gaps: 27/1185 ( 2.3%)
# Score: 3744.5
#
#
#=======================================
BSNT_02344___ 1 ATGGAACATTTGCTGAATCCGAAAGCAAGAGAGATCGAAATTTCAGGAAT 50
|||||.||||||||.|.||.|||.||.||||||||||||||
RBAM_013780__ 1 ---------TTGCTTAATCCGAATGTAAAAGAAATTGAAATTTCAGGAAT 41
BSNT_02344___ 51 ACGCAAATTCTCGAATCTTGTAGCCCAACACGAAGACGTCATTTCACTTA 100
.|||||||||||.|||||||||||.||.|||||..|.||||||||.||||
RBAM_013780__ 42 TCGCAAATTCTCAAATCTTGTAGCTCAGCACGACAATGTCATTTCGCTTA 91
BSNT_02344___ 101 CAATCGGCCAGCCTGATTTTTTCACACCGCATCATGTGAAAGCTGCCGCA 150
|.|||||.|||||.|||||.|||||.|||||.|||||.|||||.||.||.
RBAM_013780__ 92 CGATCGGTCAGCCGGATTTCTTCACGCCGCACCATGTCAAAGCGGCTGCC 141
BSNT_02344___ 151 AAAAAAGCCATTGATGAAAACGTGACGTCATATACTCCGAATGCCGGCTA 200
|||||.||.||.||.||.||||..|||.||||||||||||||||.|||..
RBAM_013780__ 142 AAAAAGGCAATCGACGAGAACGCAACGGCATATACTCCGAATGCGGGCGG 191
BSNT_02344___ 201 CCTGGAGCTGAGACAAGCTGTGCAGCTTTATATGAAGAAAAAAGCGGATT 250
|||.|||||||||||.||.||.|||||||||||||||||||||||.||||
RBAM_013780__ 192 CCTTGAGCTGAGACAGGCCGTACAGCTTTATATGAAGAAAAAAGCTGATT 241
BSNT_02344___ 251 TCAACTATGATGCTGAATCTGAAATTATCATCACAACAGGCGCAAGCCAA 300
|.||.|||||.||||||.|||||||.|||.|||||||.||.|||||||||
RBAM_013780__ 242 TGAATTATGAAGCTGAAACTGAAATCATCGTCACAACCGGGGCAAGCCAA 291
BSNT_02344___ 301 GCCATTGATGCTGCATTCCGGACGATTTTATCTCCCGGTGATGAAGTCAT 350
||.|||||.||..|.||.|||||||||||||||||.||.||||||||.||
RBAM_013780__ 292 GCGATTGACGCGTCTTTGCGGACGATTTTATCTCCGGGCGATGAAGTTAT 341
BSNT_02344___ 351 TATGCCAGGGCCTATTTATCCAGGCTATGAACCTATTATCAATTTGTGCG 400
|.|.||.||.||.||.|||||.|||||.|||||.||.|||....||| ||
RBAM_013780__ 342 TCTCCCCGGACCGATATATCCGGGCTACGAACCGATCATCCGCATGT-CG 390
BSNT_02344___ 401 GG-GCCAAGCCTGTCATTGTTGATACTACGTCACACGGCTTTAAGCTTAC 449
|| |||...||.|||..|||.|||||.|||.|||||||.||||||||.||
RBAM_013780__ 391 GGTGCCGTTCCGGTCCATGTGGATACGACGACACACGGATTTAAGCTGAC 440
BSNT_02344___ 450 CGCCCGGCTGATTGAAGACGCTCTGACACCCAACACCAAGTGTGTCGTGC 499
.||.|||||.||||||||..|.||||||||.||.||.||.||.|||.|.|
RBAM_013780__ 441 GGCGCGGCTCATTGAAGAATCGCTGACACCAAAAACAAAATGCGTCATTC 490
BSNT_02344___ 500 TTCCTTATCCGTCAAATCCTACCGGCGTGACTTTATCTGAAGAAGAACTG 549
||||||||||||||||.||.|||||.|||||.||.|||||.|||||.|||
RBAM_013780__ 491 TTCCTTATCCGTCAAACCCGACCGGAGTGACATTGTCTGAGGAAGAGCTG 540
BSNT_02344___ 550 AAAAGCATTGCAGCCCTTTTAAAAGGCAGAAATGTCTTCGTATTGTCCGA 599
.|||.|||.||||||.|..|.||.|||||||||||.||.||..||||.||
RBAM_013780__ 541 CAAAACATCGCAGCCGTCCTGAAGGGCAGAAATGTTTTTGTCCTGTCTGA 590
BSNT_02344___ 600 TGAAATATACAGTGAATTAACATATGACAGACCGCATTACTCCATCGCAA 649
|||.||.|||||.||||||||.|||||||||||||||||.||.|||||..
RBAM_013780__ 591 TGAGATTTACAGCGAATTAACCTATGACAGACCGCATTATTCGATCGCGT 640
BSNT_02344___ 650 ACCATTTGCGGGATCAAACAATTGTCATTAACGGCTTGTCAAAATCACAC 699
...|||||.|.||.||.||.||.|||||.||||||.||||||||||||||
RBAM_013780__ 641 CTTATTTGAGAGACCAGACGATCGTCATCAACGGCCTGTCAAAATCACAC 690
BSNT_02344___ 700 AGCATGACCGGTTGGAGAATTGGATTTTTATTT--GCACCGAAAGACATT 747
||||||||.||.||||||||.|| |||.|||| |||||||||||.|||
RBAM_013780__ 691 AGCATGACGGGCTGGAGAATCGG--TTTCATTTTCGCACCGAAAGAAATT 738
BSNT_02344___ 748 GCAAAGCACATTTTAAAGGTTCATCAATACAATGTATCGTGCGCCTCATC 797
||.||||||||.|||||.|||||.|||||||.|||..|.|||||.||.||
RBAM_013780__ 739 GCCAAGCACATCTTAAAAGTTCACCAATACAGTGTGACATGCGCGTCTTC 788
BSNT_02344___ 798 CATTTCTCAAAAAGCCGCGCTTGAAGCTGTCACAAACGGCTTTGACGATG 847
.||.|||||.|||||.||.||||||||.||.||||||||..||||.||||
RBAM_013780__ 789 AATCTCTCAGAAAGCGGCTCTTGAAGCGGTGACAAACGGTGTTGATGATG 838
BSNT_02344___ 848 CATTGATTATGAGAGAACAATACAAAAAACGTCTCGACTATGTTTATGAC 897
|..|.||||||||||||||.||.|||||.||.||.||||||||.||||||
RBAM_013780__ 839 CGCTTATTATGAGAGAACAGTATAAAAAGCGGCTTGACTATGTATATGAC 888
BSNT_02344___ 898 CGTCTTGTTTCCATGGGACTTGACGTAGTTAAACCGTCCGGTGCGTTTTA 947
|||||||||||.|||||.||||||||.||.||.|||||.||.||.|||||
RBAM_013780__ 889 CGTCTTGTTTCAATGGGGCTTGACGTCGTAAAGCCGTCAGGCGCATTTTA 938
BSNT_02344___ 948 TATCTTCCCTTCTATTAAATCATTTGGAATGACTTCATTTGATTTTAGTA 997
||||||||||||.|||||.|||||.||||||.|.||.|||||||||||||
RBAM_013780__ 939 TATCTTCCCTTCCATTAAGTCATTCGGAATGTCATCGTTTGATTTTAGTA 988
BSNT_02344___ 998 TGGCTCTTTTGGAAGACGCTGGTGTGGCACTCGTGCCGGGCAGCTCATTC 1047
||||||||||.||.||.||.||||||||.||.|||||.||||||||.||.
RBAM_013780__ 989 TGGCTCTTTTAGAGGATGCAGGTGTGGCTCTTGTGCCCGGCAGCTCGTTT 1038
BSNT_02344___ 1048 TCAACATATGGTGAAGGATATGTAAGGCTGTCTTTTGCATGCTCAATGGA 1097
||||..|..||||||||.|||||.||||||||.||.||||..|||.||.|
RBAM_013780__ 1039 TCAAAGTTGGGTGAAGGGTATGTGAGGCTGTCATTCGCATATTCACTGAA 1088
BSNT_02344___ 1098 CACGCTGAGAGAAGGCCTGGACCGTTTAGAATTATTTGTATTAAAAAAAC 1147
.||..|||||||||||.|||||||..|.|||..||||.|.|||||||...
RBAM_013780__ 1089 TACATTGAGAGAAGGCTTGGACCGGCTGGAAGCATTTATTTTAAAAACGA 1138
BSNT_02344___ 1148 GTGAAGCAATGCAGACGATAAACAACGGCGTTTAA 1182
|.|||.|.||||||||.| |||||
RBAM_013780__ 1139 GAGAATCCATGCAGACTA------------TTTAA 1161
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