Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02346 and RBAM_013790

See Amino acid alignment / Visit BSNT_02346 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:03
# Commandline: needle
#    -asequence dna-align/BSNT_02346.1.9828.seq
#    -bsequence dna-align/RBAM_013790.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02346-RBAM_013790.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02346-RBAM_013790.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02346
# 2: RBAM_013790
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 181
# Identity:     114/181 (63.0%)
# Similarity:   114/181 (63.0%)
# Gaps:          38/181 (21.0%)
# Score: 349.5
# 
#
#=======================================

BSNT_02346         1 ATGGGTACCTTAGTAATATTTAAAGAAAACGAAATGACTGTTTTAGAGGA     50
                     ||||||||..||||.|||||..|..||.|..|||||||.||.|||||.||
RBAM_013790        1 ATGGGTACAGTAGTCATATTCGACCAAGATCAAATGACGGTGTTAGAAGA     50

BSNT_02346        51 TATCAGTGAAGAAA----CTTACCTGAATATGAAGAAAGAATCAGCTGAC     96
                     ||||||    .|||    ||||||||.|.|||||.||||    ||..|| 
RBAM_013790       51 TATCAG----CAAAACGGCTTACCTGCAAATGAAAAAAG----AGGCGA-     91

BSNT_02346        97 CTTCAAGAAGAGCATC------------CTCCGT--ATCTGATTTGGCAC    132
                            ||||||.||            ||||.|  ||||  |.||||..
RBAM_013790       92 -------AAGAGCGTCCCGACAAGCCCGCTCCATACATCT--TATGGCGG    132

BSNT_02346       133 GAAGACCTTCA-TTTTGATTATGGCTATTAA    162
                     ||||| |.||| .|||||.||.||.||||||
RBAM_013790      133 GAAGA-CGTCAGCTTTGAATACGGGTATTAA    162


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