Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02353 and RBAM_013840
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:04
# Commandline: needle
# -asequence dna-align/BSNT_02353___ykuE.1.9828.seq
# -bsequence dna-align/RBAM_013840___ykuE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02353___ykuE-RBAM_013840___ykuE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02353___ykuE-RBAM_013840___ykuE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02353___ykuE
# 2: RBAM_013840___ykuE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 925
# Identity: 572/925 (61.8%)
# Similarity: 572/925 (61.8%)
# Gaps: 173/925 (18.7%)
# Score: 1769.5
#
#
#=======================================
BSNT_02353___ 1 ATGAAAAAGATGTCCAGAAGACAATTTCTAAAAGGAATGTTCGG---CGC 47
||.|| .||
RBAM_013840__ 1 ---------------------------------------TTGGGTGCAGC 11
BSNT_02353___ 48 TCTTGCTGCCGGGGCTTTAACGGCCGGCGGGGGATATGGCTATGCCAGGT 97
|||.|| ||.|||..||||.||.||.|||||||||.|||
RBAM_013840__ 12 TCTCGC------------AATGGCTTGCGGAGGTTACGGCTATGCCCGGT 49
BSNT_02353___ 98 ATCTCGAGCCGCATATGATCGAGA-CAACCGAACACACAATAAAAAGCTC 146
||.|.||.||||..|||||.|||| ||.||| .||.|||||.|..|||..
RBAM_013840__ 50 ATATTGAACCGCGCATGATTGAGATCACCCG-GCATACAATCACCAGCCG 98
BSNT_02353___ 147 TCTCATCCCGCACGGATTTGACGGTTTTAAAATCGTGCAGTTCAGCGATG 196
.||.|||||.|.|||.||||||..||||||||||||.||.|||||||||.
RBAM_013840__ 99 CCTGATCCCCCGCGGTTTTGACAATTTTAAAATCGTTCAATTCAGCGATA 148
BSNT_02353___ 197 CACACTTGAGTGATTACTTTAC--------TCTCGAAGATTTAAA--AAC 236
|.||..|.||||||...||||| .||.||| |||| |.|
RBAM_013840__ 149 CGCATCTCAGTGATGTGTTTACATCCGGTGACTTGAA----TAAAGCAGC 194
BSNT_02353___ 237 TGTCATTCTTACAATTAATGAATC----TAAACCTGATCTCATTGTTTTT 282
.| ||...||.|||| .|||||.|||||..|..|.|||
RBAM_013840__ 195 GG----------AAAAGATCAATCAGCTGAAACCCGATCTGCTCATCTTT 234
BSNT_02353___ 283 ACAGGTGATATTATCGATAATCC------------TGATACGTACCAGCA 320
||.||.|||.|.||.|||||.|| |||| ||
RBAM_013840__ 235 ACGGGAGATTTAATTGATAAGCCGCATTTATTTAATGAT---------CA 275
BSNT_02353___ 321 CCACCAGGCAGTCATTCCATTATTGAGAAAGCTTAATGCTCCCTTCGGCA 370
|||.||.|||.|| .|..|..||..|||.|||.|.|||||||||||||
RBAM_013840__ 276 CCAGCATGCACTC---GCCGTGCTGCAAAATCTTGAAGCTCCCTTCGGCA 322
BSNT_02353___ 371 AGCTTTGTATTTACGGCAATCATGATCACGGAGGCTATG----GAACTGC 416
|.||||||.|||||||.||.|||||.|||||.|||||.| |||| .
RBAM_013840__ 323 AACTTTGTGTTTACGGAAACCATGACCACGGCGGCTACGGTACGAAC--A 370
BSNT_02353___ 417 CGTTTACAA-----------AAGC--CTGATGACGGCCGGAGGTTTCACG 453
|| ||||| |||| ||||| ||||| .
RBAM_013840__ 371 CG--TACAAGGCTCTGATGGAAGCGGCTGAT------------TTTCA-A 405
BSNT_02353___ 454 GTATATCGCAATGGCTATCAAACATTGTCACTCGCAGATGGCAG-CAAAA 502
||.|.|||.||.|||||.|| |||...||||.||.||| |..||
RBAM_013840__ 406 GTGTTTCGAAACGGCTACCA-------TCAGGTGCAGCTGACAGACGGAA 448
BSNT_02353___ 503 TCGAGATTG-CTTCGC-----TTGATGACTTAATGCTGGGAAACCCAGAT 546
.|..||||| .||||| |.|||||..|||||||.|||||.||.|||
RBAM_013840__ 449 GCCGGATTGAATTCGCGTTTTTGGATGATGTAATGCTCGGAAAACCCGAT 498
BSNT_02353___ 547 TATGAAGGCACCCTTTCAAGGCTGAGCGACAGACTT---TTTTCCATTCT 593
||||||||||||||.|||.|.||...||| ||| | |||||||||.|
RBAM_013840__ 499 TATGAAGGCACCCTGTCACGCCTTTCCGA-AGA--TGCGTTTTCCATTTT 545
BSNT_02353___ 594 TCTCGTCCATGAACCTGATGCGGCCTTGAAAACA-ACAGATTATCCCGTG 642
..|||||||.||.||||||||.||..|.||.||| .|.|| ||||||||.
RBAM_013840__ 546 AATCGTCCACGAGCCTGATGCCGCTCTCAAGACAGGCGGA-TATCCCGTA 594
BSNT_02353___ 643 AACCTTCAGCTTTCCGGCCATACACACGGCGGCCAGATTCAGCTGCCTTT 692
|||||.|||||.||.||.||.||.||||||||||||.|.|||||.||.||
RBAM_013840__ 595 AACCTCCAGCTGTCGGGACACACTCACGGCGGCCAGGTCCAGCTCCCGTT 644
BSNT_02353___ 693 TTACGGACCGATTATTACGCCTCCATATGGAAAAGTCTACACAGAGGGAA 742
||.|||.||..|.|||||||||||.||.||||||...||.||.||.||.|
RBAM_013840__ 645 TTTCGGCCCTCTCATTACGCCTCCTTACGGAAAAACGTATACCGACGGCA 694
BSNT_02353___ 743 TGTATCAAACGGGCAGCACTCA--TATTTACGTAAACCGAGGCCTCGGGA 790
||||| |.|| .|||..||.|| ..|||||||.||.||.||.|||||.|
RBAM_013840__ 695 TGTAT-ACAC-TGCATGACACAGCCGTTTACGTCAATCGCGGGCTCGGTA 742
BSNT_02353___ 791 TGACCAGGCTGCCTTTGCGGTTTCTGGCCAAGCCTGAAATCACTGTCTTC 840
.|||.||.|||||.|..||.|||.|.||||..||.||||||||..|.|||
RBAM_013840__ 743 CGACAAGACTGCCGTATCGATTTTTAGCCAGACCGGAAATCACGCTGTTC 792
BSNT_02353___ 841 ACCTTAAAA----AGCACAAATTAA 861
||.||.||| ||||.||||.|
RBAM_013840__ 793 ACATTGAAAACCGAGCAAAAATAA- 816
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