Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02362 and RBAM_013920
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:05
# Commandline: needle
# -asequence dna-align/BSNT_02362___ykuN.1.9828.seq
# -bsequence dna-align/RBAM_013920___ykuN.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02362___ykuN-RBAM_013920___ykuN.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02362___ykuN-RBAM_013920___ykuN.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02362___ykuN
# 2: RBAM_013920___ykuN
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 501
# Identity: 340/501 (67.9%)
# Similarity: 340/501 (67.9%)
# Gaps: 51/501 (10.2%)
# Score: 1101.5
#
#
#=======================================
BSNT_02362___ 1 ATGGCTAAAGCCTTGATTACATATGCCAGCATGTCAGGAAATACAGAAGA 50
|||...|||||.||.||.|.|||.||.||||||||.||.||||||||.||
RBAM_013920__ 1 ATGCAGAAAGCATTAATGATATACGCAAGCATGTCGGGGAATACAGAGGA 50
BSNT_02362___ 51 CATTGCCTTCATAATAAAAGATAC---------GCTTCAGGAATATGAGT 91
.||||||..|||.||||||||.|| ||.|||| |||..|||
RBAM_013920__ 51 TATTGCCGGCATTATAAAAGAAACACTGAGCGGGCATCAG--ATAGCAGT 98
BSNT_02362___ 92 TGGATATCGATTGTGTCGAGATAGATGATATGGATGCGTCTTGTTT--AA 139
| ||.|||.|.||.||.||.||....||||||..||.|.| ||
RBAM_013920__ 99 T-------GACTGTCTTGACATGGACGAAGCAGATGCGGATTCTCTCGAA 141
BSNT_02362___ 140 CCTCCTATGATTATGTACTGATTGGCACCTATACATGGGGGGACGGCGAT 189
.|.|||||||||||..|..|.|||||.||.||||||||||||||.|||
RBAM_013920__ 142 --GCATATGATTATGTTTTTGTCGGCACGTACACATGGGGGGACGGTGAT 189
BSNT_02362___ 190 TTGCCCTACGAAGCGGAGGATTTTTTCGAAGAGGT----CAAACAGATTC 235
.|.||.|||||||||||.|||||||.||||||..| | |||| .|
RBAM_013920__ 190 CTTCCTTACGAAGCGGAAGATTTTTACGAAGATATTCTGC--ACAG--CC 235
BSNT_02362___ 236 AGCTTAATGGTTTAAAAACAGCCTGCTTCGGGTCTGGCGATTATTCTTAT 285
||||.||.||..|.|||||.|||||.|||||.||.||||||.|..|.||.
RBAM_013920__ 236 AGCTCAACGGACTGAAAACGGCCTGTTTCGGTTCAGGCGATCACGCCTAC 285
BSNT_02362___ 286 CCAAAGTTTTGCGAAGCGGTGAATTTGTTCAATGTCATGC---TGCAAGA 332
||.|||||||||||||||||.|...|||| .||..|||| || ||.|
RBAM_013920__ 286 CCGAAGTTTTGCGAAGCGGTCACGCTGTT--TTGCGATGCGTTTG-AACA 332
BSNT_02362___ 333 GGCGGGAGCTGCTGTTTACCAGGAAACACTAAAAATTGAATTAGCGCCTG 382
|||.|||||...|.|.||.|.||||||.||.||||||||..|.|||||.|
RBAM_013920__ 333 GGCCGGAGCCAATTTATATCCGGAAACGCTGAAAATTGAGCTGGCGCCCG 382
BSNT_02362___ 383 AAACAGATGAAGATGTGGAAAGCTGCCGAGCGTTTGCGAGAGGTTTTCTT 432
|.||.|.|||.|||..||||.|||||..||..||||...|.|||||||||
RBAM_013920__ 383 AGACGGCTGAGGATCAGGAATGCTGCAAAGAATTTGTCCGCGGTTTTCTT 432
BSNT_02362___ 433 GCATGGGCAGATTATATGAACAAGGAAAAAAT------CCATGTTTCATA 476
||||||||.| .|.|.||.|||.| ||||||||||||
RBAM_013920__ 433 GCATGGGCCG-----CTCACCACGGAGA----CCGGTGCCATGTTTCATA 473
BSNT_02362___ 477 A 477
|
RBAM_013920__ 474 A 474
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