Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02370 and RBAM_013980

See Amino acid alignment / Visit BSNT_02370 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:05
# Commandline: needle
#    -asequence dna-align/BSNT_02370___ykuT.1.9828.seq
#    -bsequence dna-align/RBAM_013980___ykuT.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02370___ykuT-RBAM_013980___ykuT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02370___ykuT-RBAM_013980___ykuT.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02370___ykuT
# 2: RBAM_013980___ykuT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 838
# Identity:     583/838 (69.6%)
# Similarity:   583/838 (69.6%)
# Gaps:          65/838 ( 7.8%)
# Score: 1934.0
# 
#
#=======================================

BSNT_02370___      1 ---ATGGACTTTATTAAACAATATGATTGGGCGGGACTGATTACAAATGC     47
                        ||.|| ||||  |||||.|.|||.|||||.||.||..|.|||..|||
RBAM_013980__      1 ATGATTGA-TTTA--AAACACTTTGACTGGGCCGGGCTTCTCACATCTGC     47

BSNT_02370___     48 CGGTGTTCTGCTCATTAAACTCGC---CATTATGATATTGCTCTATTTTA     94
                     |||..||.|..||||.||.||.||   ||||||..||..|   ||.||||
RBAM_013980__     48 CGGGATTTTCATCATAAAGCTGGCTCTCATTATTTTAGCG---TACTTTA     94

BSNT_02370___     95 TCGTTCGATCATTAGGCATGAAAA----TCATTAAACATCTGTTTGCA-A    139
                     |..|.||..|    ||||.|||||    |.||.||.||||||||| || |
RBAM_013980__     95 TTTTCCGGGC----GGCAGGAAAAAAGCTGATCAAGCATCTGTTT-CAGA    139

BSNT_02370___    140 AATTCGAGGAGCAGAATAGCTTGTCTATCGGACGTGCACATACGCTCCGA    189
                     ||||||||.|.||.||.|.|.|.||.|..||.||.||..||||..|.|||
RBAM_013980__    140 AATTCGAGCAACAAAACAACCTCTCCACAGGCCGCGCTTATACTTTGCGA    189

BSNT_02370___    190 AGCCTGACTCTTAACATATTTGCTTATACTT--TGATTTTTATATTCTTC    237
                     |||||..|.|||||..|||.||  .||||.|  |||||||..|.||..||
RBAM_013980__    190 AGCCTCGCGCTTAATGTATATG--GATACATCCTGATTTTCGTTTTTATC    237

BSNT_02370___    238 GTCATGGTTCTAGATTTGTTTCATTATGATCCAAGCGCTCTTTTAGCGGG    287
                     ||.|||.||.|.|||||.|||||.||..||||.||||||||..|.||.||
RBAM_013980__    238 GTAATGATTTTGGATTTATTTCACTACAATCCGAGCGCTCTCATTGCCGG    287

BSNT_02370___    288 GGCAGGAATCGTCGGCCTGGCTGTCGGATTTGGCGCCCAAGGGCTTGTCA    337
                     .||.||..|.|||||.||.||.|||||.||.||.||.||.||||||||||
RBAM_013980__    288 CGCCGGGGTGGTCGGTCTCGCAGTCGGCTTCGGGGCTCAGGGGCTTGTCA    337

BSNT_02370___    338 GTGACATCGTGACAGGTTTTTTTA---TTTTGCTTGAGAAACAATTGGAT    384
                     ||||||||||.||.||.|||||||   |||||   ||.|||||..|.||.
RBAM_013980__    338 GTGACATCGTCACCGGATTTTTTATCCTTTTG---GAAAAACAGATCGAC    384

BSNT_02370___    385 GTCGGAGATTATATTACCGTTTCCACCTTTGACGGAATTGTCGAGCAGGT    434
                     |||||.|||||||||||.|||.||..||....|||.||||||||||||||
RBAM_013980__    385 GTCGGCGATTATATTACGGTTGCCGGCTACAGCGGCATTGTCGAGCAGGT    434

BSNT_02370___    435 TGGCTTAAGAACAACTCAAATCCGCAGCTTTGACGGAACATTGCATTACA    484
                     .||..|..|.||.||.||||||||.|||||||||||.||..|.||.||..
RBAM_013980__    435 CGGTCTCCGTACGACGCAAATCCGGAGCTTTGACGGCACGCTTCACTATC    484

BSNT_02370___    485 TCCCCAACAGAAACATCACAAACGTAAGCAATCATTCTCGTGGTACCATG    534
                     |.||||||.|...|||.||.||.||.|||||.|||||.||.||.||.|||
RBAM_013980__    485 TTCCCAACCGGGGCATTACGAATGTGAGCAACCATTCCCGCGGAACGATG    534

BSNT_02370___    535 CAGGCTCTTGTTGATATTAAAGTGCCGGCTGAAAGAAACATTGATGAAAT    584
                     |||||.|||||.|||||||||||||||..|||||.|||..|||||||||.
RBAM_013980__    535 CAGGCGCTTGTCGATATTAAAGTGCCGCTTGAAAAAAATCTTGATGAAAC    584

BSNT_02370___    585 GATTCATATTTT----ACAGCAGGTTTGTGATGAGACGGCAGCGGCT---    627
                     .|||||.||..|    ||.||      ||| |||.|..|||||.|||   
RBAM_013980__    585 CATTCAAATCCTGCAAACCGC------GTG-TGACAAAGCAGCCGCTGCG    627

BSNT_02370___    628 CTTCCACAAATAAAAGAAGGCCCAAATGTCATCGGGATTCAAGAACTGGG    677
                     ||.||.||.||.||.|||||.||..|.|||||||||.||||.||..|..|
RBAM_013980__    628 CTCCCGCAGATTAAGGAAGGGCCGGACGTCATCGGGGTTCAGGATTTAAG    677

BSNT_02370___    678 GACTTCTGAAATTGTGATCAGGGTCATTGCCAAAACAGAAAATATGGAAC    727
                     .||.||.|||||.||||||||..|||||||||||||||||||||||||.|
RBAM_013980__    678 CACGTCAGAAATGGTGATCAGAATCATTGCCAAAACAGAAAATATGGAGC    727

BSNT_02370___    728 AGTGGCGAGTCGAACGAGTGTTGAGAAAAGAAATAAAGAACGCGTTCGAC    777
                     |.|||||.||.|||||.||..||.|.|.|||||||||.|.||||.|||||
RBAM_013980__    728 AATGGCGGGTTGAACGCGTACTGCGGAGAGAAATAAAAATCGCGCTCGAC    777

BSNT_02370___    778 CGCGCTTTCCCTAAAGAAA-----------CAGAATAA    804
                     ||   |||   |||  |||           |.|||||.
RBAM_013980__    778 CG---TTT---TAA--AAACGCCGCTTCCGCCGAATAG    807


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_02370 and RBAM_013980

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
