Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02396 and RBAM_014080

See Amino acid alignment / Visit BSNT_02396 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_02396___yknW.1.9828.seq
#    -bsequence dna-align/RBAM_014080___yknW.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02396___yknW-RBAM_014080___yknW.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02396___yknW-RBAM_014080___yknW.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02396___yknW
# 2: RBAM_014080___yknW
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 776
# Identity:     467/776 (60.2%)
# Similarity:   467/776 (60.2%)
# Gaps:         157/776 (20.2%)
# Score: 1249.5
# 
#
#=======================================

BSNT_02396___      1 ATGGAAACGAATGTAGAAAAAAACAGCGGA-ACGGC---GACTGAAAAGC     46
                     ||||||.|.||..|.||||||..||    | |||||   .||.|||||||
RBAM_014080__      1 ATGGAACCAAACCTGGAAAAAGGCA----ATACGGCAGTAACGGAAAAGC     46

BSNT_02396___     47 CTTCACTTTTCGGAGTAATCACAAGTCC-GTCCGTTCAATTTGAAAGAAT     95
                     |.|||.|||||||.||.||.|||||||| || .||.||.|||.|||||.|
RBAM_014080__     47 CGTCAATTTTCGGCGTCATTACAAGTCCTGT-TGTGCAGTTTAAAAGATT     95

BSNT_02396___     96 AAGAGAAAGGCCGGCTGT-ATGGGGA--CCGCTTTTGATTGTTGCAGCAA    142
                     ||.|||||.||||   || ||.||.|  ||.||..|||||||  ||.| |
RBAM_014080__     96 AAAAGAAAAGCCG---GTCATCGGCATTCCTCTCCTGATTGT--CATC-A    139

BSNT_02396___    143 TTATCATCGTCGGTGCCGTGC-------TGCAATCACTCGGTACGGATTA    185
                     ||.|||||| ||  |||| ||       |||....|||.||.|.|.||||
RBAM_014080__    140 TTCTCATCG-CG--GCCG-GCAGTATTTTGCGCGGACTGGGGATGAATTA    185

BSNT_02396___    186 T-----AGTGAGCTTTTGAAAAGCCAGGATACGCAAGGGCTATCT-----    225
                     |     ||||     .||||.||||        ||     |.|||     
RBAM_014080__    186 TGAAGAAGTG-----CTGAACAGCC--------CA-----TCTCTTGACG    217

BSNT_02396___    226 --------GCTGAACAAATGGAAACTGTCGCAACAATAACCAAATTTGGC    267
                             |.|||.||.||.|||| ||     ||.|.||||    ||.||
RBAM_014080__    218 GTTTGACGGATGATCAGATTGAAA-TG-----ACCAAAACC----TTCGC    257

BSNT_02396___    268 GGAAT--GGCAGGCGCTATTATCGGCGGTATC----GCAGCATTA-----    306
                     ..|||  ||||    |.||..||||.||.|||    |..||||||     
RBAM_014080__    258 TAAATTCGGCA----CGATGTTCGGAGGAATCTTCGGGGGCATTATCGCT    303

BSNT_02396___    307 ---TTTATTGCCCCTCTTATTTATTGGCTCTGTGTAAAAATATCAGGCGG    353
                        |||||.|..||.||.|||||.|||||.||.||.|||||.||||||||
RBAM_014080__    304 CTGTTTATCGTTCCGCTCATTTACTGGCTGTGCGTCAAAATTTCAGGCGG    353

BSNT_02396___    354 AGTTACGACATATAAAAAAATGCTTTCTCTCGGTCTGTTTGTCTCTTTAA    403
                     .||.||.||.||.|||||||||||.||.|||.|.||||||....|.||.|
RBAM_014080__    354 CGTGACAACTTACAAAAAAATGCTATCACTCAGCCTGTTTACGGCATTTA    403

BSNT_02396___    404 TTAGCAGTCTCGGATTATTGGTTAATGGAATCGT---TGCTTTTACGACT    450
                     |||.||.|.||||.|||....||||.||..|.||   |..||||||...|
RBAM_014080__    404 TTACCAATATCGGCTTAGCTATTAACGGTCTTGTCACTTATTTTACCGGT    453

BSNT_02396___    451 GACGTGAATCCTCTTTACAGCACGACGTCAC-----TGGCAGGGATTATC    495
                     | ||.|    |||   ||.|.|||.|||.||     ||||   ||.|.||
RBAM_014080__    454 G-CGGG----CTC---ACTGTACGCCGTTACATCTTTGGC---GAGTGTC    492

BSNT_02396___    496 CCATCTGACGG----GGC-TCTTGCCAGCG----TGTTAAATACCTTTGA    536
                     ..|.|.|.|||    ||| ||      |||    |.||||...|.||.||
RBAM_014080__    493 ATACCGGCCGGAGACGGCGTC------GCGGTCTTTTTAAGCGCGTTCGA    536

BSNT_02396___    537 AATTTTCAGCATCTGGAGCTTTGTATTAT--TAGCAATCGGACTTCACAA    584
                     .||||||||||||||||||  |.||||.|  |.||..|.|||||||.|.|
RBAM_014080__    537 CATTTTCAGCATCTGGAGC--TATATTCTGCTCGCTTTGGGACTTCGCTA    584

BSNT_02396___    585 AACGGGAGGCATCTCCAAAAAAGCCGGGTGGATTTCAGCAATCATTCTAT    634
                     .||.||.|||||.||.||||||||.|..||||.|||.||.||..|.||.|
RBAM_014080__    585 TACAGGCGGCATTTCGAAAAAAGCGGCCTGGACTTCCGCGATTGTCCTGT    634

BSNT_02396___    635 TCGGAATTTTAGTTGTATTTTCG------------CTTTTTTCAGGTTTA    672
                     |.|..|||.|..||.||.|||||            ||.||   |.|||.|
RBAM_014080__    635 TTGTTATTATGCTTTTAGTTTCGGCAGTCGGAGGACTGTT---AAGTTCA    681

BSNT_02396___    673 AT--CAATTCTGTGGCGGGTGCATAA    696
                     ||  ||        ||.||||.||||
RBAM_014080__    682 ATGACA--------GCAGGTGTATAA    699


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