Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02397 and RBAM_014090

See Amino acid alignment / Visit BSNT_02397 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:06
# Commandline: needle
#    -asequence dna-align/BSNT_02397___yknX.1.9828.seq
#    -bsequence dna-align/RBAM_014090___yknX.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02397___yknX-RBAM_014090___yknX.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02397___yknX-RBAM_014090___yknX.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02397___yknX
# 2: RBAM_014090___yknX
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1156
# Identity:     845/1156 (73.1%)
# Similarity:   845/1156 (73.1%)
# Gaps:          41/1156 ( 3.5%)
# Score: 2982.0
# 
#
#=======================================

BSNT_02397___      1 ATGAAAAAAGTCTGGATCGGAATTGGAATCGCAGTTATAGTCGCTCTTTT     50
                     |||||||||.|.|||||||||||.||.|||||.||.||.||.||..|.||
RBAM_014090__      1 ATGAAAAAAATTTGGATCGGAATCGGCATCGCCGTAATTGTTGCAGTATT     50

BSNT_02397___     51 TGTTGGAATCAATATATACCGGTCTGCCGCTCCAACAAGCGGCAGCGCCG    100
                     ..|.||.||||||||.||...||||||||||||..|..||||.|||||||
RBAM_014090__     51 CATCGGTATCAATATTTATAAGTCTGCCGCTCCCGCGGGCGGAAGCGCCG    100

BSNT_02397___    101 GCAAGGAGATACAGACGGGGAGCGTTGAAGAAAATGAAATCTCATCAACG    150
                     |.||..|.||..|.||.||.|.|.|.|||.|.|..||||||||.||.|||
RBAM_014090__    101 GGAAAAAAATCGAAACCGGAACCATGGAAAATAGAGAAATCTCCTCTACG    150

BSNT_02397___    151 GTTATGGTTCCTGGCACGCTAAAATTTTCAAATGAACAGTATGTCTTTTA    200
                     |||||||||||.||.||.||.|||||.||.||.|||||||||||.|||||
RBAM_014090__    151 GTTATGGTTCCGGGAACACTTAAATTCTCTAAAGAACAGTATGTTTTTTA    200

BSNT_02397___    201 TGAAGCGGATAAAGGGACATTAGAAGACATTAAAGTTAAGGAAGGCGATA    250
                     |||||||||||||||.||..|.||..|..|.|||||.||.||||||||.|
RBAM_014090__    201 TGAAGCGGATAAAGGAACTCTTGATAAAGTGAAAGTAAAAGAAGGCGACA    250

BSNT_02397___    251 AAGTTAAAAAGGGCACGCCTTTAGTCACCTATACAAATGAGCAGCTGAGC    300
                     ||||.|||||.||..||.|.||||||||.|||||||||||||||||.|..
RBAM_014090__    251 AAGTAAAAAAAGGGTCGTCGTTAGTCACGTATACAAATGAGCAGCTCAAT    300

BSNT_02397___    301 CTGGAAAAAGAACAGAACCAGTT-----AACGTCTGAATCCAACCGGCTT    345
                     ||.||.||||||||.||..||||     |||     ||||.||.|||.|.
RBAM_014090__    301 CTTGATAAAGAACAAAATGAGTTGACAGAAC-----AATCAAAACGGATG    345

BSNT_02397___    346 CAAATTGACCAAATTCAAGAAAAGTTAAAAGCCTTAGACAGCAAAGAAAG    395
                     |||||.||.|||.||.|||||||..|.|.|||.|||.|||||||.|||..
RBAM_014090__    346 CAAATCGAACAAGTTGAAGAAAAACTCAGAGCATTAAACAGCAAGGAACA    395

BSNT_02397___    396 AGAACTGGAAAAACAGGTAGGAAAGAAA---GAAGCAGAAAAACAAATCG    442
                     |||.||||.||||||.||.||   |.||   |||||..||||||||||.|
RBAM_014090__    396 AGATCTGGCAAAACAAGTGGG---GGAAGCGGAAGCCAAAAAACAAATTG    442

BSNT_02397___    443 AATCTGAACGGACAGAGCTTCAAATGCAGAAAAAAACAGCGGAGATCGAA    492
                     ||||.||||||||.||.||.||..|.|||.|||||||.|||||.||||||
RBAM_014090__    443 AATCCGAACGGACTGATCTGCAGCTTCAGCAAAAAACGGCGGAAATCGAA    492

BSNT_02397___    493 TTAAAACAAACCGAGCTTCAGCGGCAGTCACTTGCCAACCGGGTGTCAGA    542
                     |||||.|||.|.||..|.||...||||||.||||..||.|.||||.|..|
RBAM_014090__    493 TTAAAGCAATCTGATTTGCAAAAGCAGTCTCTTGAAAATCAGGTGGCGAA    542

BSNT_02397___    543 TTTAGAAGTGAAAAGCGAAATTGAAGGCACCGTTATTTCTGTCAACCAAG    592
                     |.|..|.||.||.||.||.||.||.||.||.|||||.||.||.||.||||
RBAM_014090__    543 TCTCAATGTTAAGAGTGAGATGGACGGGACGGTTATCTCGGTAAATCAAG    592

BSNT_02397___    593 AAGCGGCATCCAAAAAGTCAGATATTCAAGAGCCTGTCATACATATCGGC    642
                     |||||||.||.|||||.||.|||||||||||.||.||.||||||||.||.
RBAM_014090__    593 AAGCGGCTTCTAAAAAATCGGATATTCAAGAACCGGTTATACATATAGGA    642

BSNT_02397___    643 AACCCAAAAGACCTTGTCGTCTCAGGGAAATTGTCTGAATACGATACATT    692
                     .||||..||.||||..||||..|.||.||.|||||.||||||||.||..|
RBAM_014090__    643 GACCCGGAACACCTGATCGTTGCCGGCAATTTGTCCGAATACGACACGCT    692

BSNT_02397___    693 GAAAGTCAAAAAAGGCCAGAAG-GTCACACTCACTTCAGATGTAATACAG    741
                     ||||||.|||||.||.|| ||| ||.|||.|.||.|||||.|..||.|..
RBAM_014090__    693 GAAAGTGAAAAAGGGACA-AAGCGTTACAATTACCTCAGACGCCATTCCA    741

BSNT_02397___    742 GGTAAAACATGGAAAGGCACGGTTTCCGCAGTCGGGCTTGTTCCGGATCA    791
                     ||||||||.||||||||.|..||..|.||.|||||.||.|||||.|||||
RBAM_014090__    742 GGTAAAACGTGGAAAGGGAGAGTGGCGGCTGTCGGCCTCGTTCCTGATCA    791

BSNT_02397___    792 GCAGGAGAGCGCTG---CGGCACAAGGAACAGAACAGGCGGTCCAATACC    838
                     ..||...|||||||   |||...||.|.||.||||||||.||.||.||.|
RBAM_014090__    792 AAAGTCAAGCGCTGCTTCGGGGGAAAGTACGGAACAGGCCGTGCAGTATC    841

BSNT_02397___    839 CGCTTCAAGTGAAAATAAAAGGAAATCTTCCAGAAGGAAAGCCAGGCTTT    888
                     ||.|.||.||.||..|.|..|||||.|||||.||.||.|||||.||.|||
RBAM_014090__    842 CGTTCCAGGTTAAGCTGATCGGAAACCTTCCGGAGGGCAAGCCGGGGTTT    891

BSNT_02397___    889 AAATTTATCATGAATATTGAAACAGATAAACGGAAAGCAAATACGCT---    935
                     |||||.||.|||||.|||||||||||.|||||||||||..|||||||   
RBAM_014090__    892 AAATTAATTATGAACATTGAAACAGACAAACGGAAAGCCGATACGCTGCC    941

BSNT_02397___    936 -TCCTTCAAAGGCAGTCAAAAAAGA---AGATGACCAATATTATGTGTAT    981
                      ||||.|    ||.|||||||||||   ||||||.|   |.|..||.|.|
RBAM_014090__    942 GTCCTCC----GCGGTCAAAAAAGACGGAGATGAGC---ACTGGGTCTTT    984

BSNT_02397___    982 ACAGTAAAAGACGGAAAAGCAAAGCGAGTTAATGTCAAAATCGGCGA-AG   1030
                     ||.|||||||||||.||.||.||.||.||.||.||.|||.||||||| |.
RBAM_014090__    985 ACGGTAAAAGACGGGAAGGCCAAACGCGTGAAAGTTAAAGTCGGCGATAC   1034

BSNT_02397___   1031 TGACAGATGACCTGACAGAAATTAAAGAGGGGCTTACCCAAGATGATCAA   1080
                     .| ||.||.|.||.||.||.||.||||||||||||.|..|.||||||.||
RBAM_014090__   1035 CG-CAAATCAGCTTACGGAGATAAAAGAGGGGCTTTCAAAGGATGATAAA   1083

BSNT_02397___   1081 GTCATTTTGAATCCATCTGATCAGG--TGACTGACGGAATGGAAGTGAAA   1128
                     ||||||.|||||||..||||  .||  ||||||||||||.|||.||||||
RBAM_014090__   1084 GTCATTCTGAATCCGGCTGA--CGGTTTGACTGACGGAACGGATGTGAAA   1131

BSNT_02397___   1129 TCTTAA   1134
                     .|.||.
RBAM_014090__   1132 GCATAG   1137


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